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  • Review
  • Open Access
54 Citations
8,538 Views
20 Pages

The effects of PM2.5 on human health fluctuate greatly among various age groups, influenced by a range of physiological and immunological reactions. This paper compares the pathogenesis of the disease caused by PM2.5 in people of different ages, focu...

  • Review
  • Open Access
37 Citations
9,556 Views
20 Pages

Unravelling the Epigenetic Code: DNA Methylation in Plants and Its Role in Stress Response

  • Emanuela Talarico,
  • Alice Zambelli,
  • Fabrizio Araniti,
  • Eleonora Greco,
  • Adriana Chiappetta and
  • Leonardo Bruno

Environmental stress significantly affects plant growth, development, and survival. Plants respond to stressors such as temperature fluctuations, water scarcity, nutrient deficiencies, and pathogen attacks through intricate molecular and physiologica...

  • Review
  • Open Access
24 Citations
12,762 Views
22 Pages

Targeting SWI/SNF Complexes in Cancer: Pharmacological Approaches and Implications

  • Megan R. Dreier,
  • Jasmine Walia and
  • Ivana L. de la Serna

SWI/SNF enzymes are heterogeneous multi-subunit complexes that utilize the energy from ATP hydrolysis to remodel chromatin structure, facilitating transcription, DNA replication, and repair. In mammalian cells, distinct sub-complexes, including cBAF,...

  • Review
  • Open Access
23 Citations
8,387 Views
24 Pages

Decoding the Epigenetics of Infertility: Mechanisms, Environmental Influences, and Therapeutic Strategies

  • Lara Saftić Martinović,
  • Tea Mladenić,
  • Dora Lovrić,
  • Saša Ostojić and
  • Sanja Dević Pavlić

5 September 2024

Infertility is a complex condition caused by a combination of genetic, environmental, and lifestyle factors. Recent advances in epigenetics have highlighted the importance of epigenetic changes in fertility regulation. This review aims to provide a c...

  • Review
  • Open Access
22 Citations
11,650 Views
24 Pages

Out of the Silence: Insights into How Genes Escape X-Chromosome Inactivation

  • Samantha B. Peeters,
  • Bronwyn J. Posynick and
  • Carolyn J. Brown

23 November 2023

The silencing of all but one X chromosome in mammalian cells is a remarkable epigenetic process leading to near dosage equivalence in X-linked gene products between the sexes. However, equally remarkable is the ability of a subset of genes to continu...

  • Review
  • Open Access
20 Citations
7,495 Views
16 Pages

Epigenetic regulation has the potential to revolutionize plant breeding and improve crop yields by regulating gene expression in plants. DNA methylation and histone modifications are key epigenetic modifications that can impact plant development, str...

  • Review
  • Open Access
17 Citations
5,761 Views
17 Pages

The dynamic regulation of histone methylation and demethylation plays an important role in the regulation of gene expression. Aberrant expression of histone lysine demethylases has been implicated in various diseases including intractable cancers, an...

  • Review
  • Open Access
17 Citations
5,380 Views
20 Pages

Epigenetic Regulation of Neural Stem Cells in Developmental and Adult Stages

  • Shu Kunoh,
  • Hideyuki Nakashima and
  • Kinichi Nakashima

The development of the nervous system is regulated by numerous intracellular molecules and cellular signals that interact temporally and spatially with the extracellular microenvironment. The three major cell types in the brain, i.e., neurons and two...

  • Review
  • Open Access
15 Citations
5,937 Views
15 Pages

Although reported in the literature, ribosome heterogeneity is a phenomenon whose extent and implications in cell and organismal biology is not fully appreciated. This has been the case due to the lack of the appropriate techniques and approaches. He...

  • Review
  • Open Access
15 Citations
5,167 Views
20 Pages

Current Approaches to Epigenetic Therapy

  • Ekaterina D. Griazeva,
  • Daria M. Fedoseeva,
  • Elizaveta I. Radion,
  • Pavel V. Ershov,
  • Ivan O. Meshkov,
  • Alexandra V. Semyanihina,
  • Anna S. Makarova,
  • Valentin V. Makarov,
  • Vladimir S. Yudin and
  • Sergey A. Kraevoy
  • + 1 author

30 September 2023

Epigenetic therapy is a promising tool for the treatment of a wide range of diseases. Several fundamental epigenetic approaches have been proposed. Firstly, the use of small molecules as epigenetic effectors, as the most developed pharmacological met...

  • Review
  • Open Access
14 Citations
4,447 Views
17 Pages

The ErbB Signaling Network and Its Potential Role in Endometrial Cancer

  • Georgios Androutsopoulos,
  • Ioanna Styliara,
  • Evgenia Zarogianni,
  • Nadia Lazurko,
  • George Valasoulis,
  • Georgios Michail and
  • Georgios Adonakis

Endometrial cancer (EC) is the second most common malignancy of the female reproductive system worldwide. The updated EC classification emphasizes the significant role of various signaling pathways such as PIK3CA-PIK3R1-PTEN and RTK/RAS/β-cateni...

  • Review
  • Open Access
13 Citations
4,684 Views
27 Pages

Background: Plants face a wide range of environmental stresses that disrupt growth and productivity. To survive and adapt, they undergo complex metabolic reprogramming by redirecting carbon and nitrogen fluxes toward the biosynthesis of protective se...

  • Review
  • Open Access
10 Citations
4,882 Views
19 Pages

Transposable elements (TEs) are major components of plant genomes with the ability to change their position in the genome or to create new copies of themselves in other positions in the genome. These can cause gene disruption and large-scale genomic...

  • Review
  • Open Access
10 Citations
3,900 Views
12 Pages

Pulmonary Pathogen-Induced Epigenetic Modifications

  • Dylan Wrede,
  • Mika Bordak,
  • Yeabtsega Abraham and
  • Masfique Mehedi

Epigenetics generally involves genetic control by factors other than our own DNA sequence. Recent research has focused on delineating the mechanisms of two major epigenetic phenomena: DNA methylation and histone modification. As epigenetics involves...

  • Review
  • Open Access
10 Citations
3,143 Views
13 Pages

Evaluation of Exosomal miRNA as Potential Biomarkers in Cervical Cancer

  • Jéssika Aline do Nascimento Medeiros,
  • Ayane Cristine Alves Sarmento,
  • Emanuelly Bernardes-Oliveira,
  • Ronnier de Oliveira,
  • Maysa Eunice Grigorio Bezerra Lima,
  • Ana Katherine Gonçalves,
  • Deyse de Souza Dantas and
  • Janaina Cristiana de Oliveira Crispim

Different studies show that small non-coding RNAs, such as microRNAs (miRNAs) obtained from exosomes, are considered potential biomarkers in several types of cancer, including cervical cancer (CC). Therefore, the present study seeks to present an ove...

  • Review
  • Open Access
10 Citations
10,038 Views
24 Pages

Epigenetics in Skin Homeostasis and Ageing

  • Iasonas Dermitzakis,
  • Stella Aikaterini Kyriakoudi,
  • Sofia Chatzianagnosti,
  • Despoina Chatzi,
  • Efstratios Vakirlis,
  • Soultana Meditskou,
  • Maria Eleni Manthou and
  • Paschalis Theotokis

The skin, the largest organ of the human body, plays numerous essential roles, including protection against environmental hazards and the regulation of body temperature. The processes of skin homeostasis and ageing are complex and influenced by many...

  • Article
  • Open Access
9 Citations
2,944 Views
18 Pages

Deciphering the Diversity in Bacterial Transporters That Salvage Queuosine Precursors

  • Samia Quaiyum,
  • Yifeng Yuan,
  • Paul J. Kuipers,
  • Maria Martinelli,
  • Marshall Jaroch and
  • Valérie de Crécy-Lagard

Queuosine (Q) is a modification of the wobble base of tRNA harboring GUN anticodons with roles in decoding accuracy and efficiency. Its synthesis is complex with multiple enzymatic steps, and several pathway intermediates can be salvaged. The only tw...

  • Review
  • Open Access
8 Citations
2,495 Views
17 Pages

Epigenetic modifications act as crucial regulators of gene activity and are influenced by both internal and external environmental factors, with diet being the most impactful external factor. On the other hand, cellular metabolism encompasses a compl...

  • Review
  • Open Access
7 Citations
3,648 Views
25 Pages

MicroRNAs are non-coding RNAs fundamental to metazoan development and disease. Although the aberrant regulation of microRNAs during mammalian tumorigenesis is well established, investigations into the contributions of individual microRNAs are wrought...

  • Review
  • Open Access
7 Citations
6,032 Views
19 Pages

Histone Demethylase Modulation: Epigenetic Strategy to Combat Cancer Progression

  • Rashmi Srivastava,
  • Rubi Singh,
  • Shaurya Jauhari,
  • Niraj Lodhi and
  • Rakesh Srivastava

Epigenetic modifications are heritable, reversible changes in histones or the DNA that control gene functions, being exogenous to the genomic sequence itself. Human diseases, particularly cancer, are frequently connected to epigenetic dysregulations....

  • Article
  • Open Access
7 Citations
3,412 Views
19 Pages

Sex-Specific Associations between Prenatal Exposure to Bisphenols and Phthalates and Infant Epigenetic Age Acceleration

  • Gillian England-Mason,
  • Sarah M. Merrill,
  • Jiaying Liu,
  • Jonathan W. Martin,
  • Amy M. MacDonald,
  • David W. Kinniburgh,
  • Nicole Gladish,
  • Julia L. MacIsaac,
  • Gerald F. Giesbrecht and
  • Deborah Dewey
  • + 2 authors

We examined whether prenatal exposure to two classes of endocrine-disrupting chemicals (EDCs) was associated with infant epigenetic age acceleration (EAA), a DNA methylation biomarker of aging. Participants included 224 maternal–infant pairs fr...

  • Article
  • Open Access
6 Citations
4,664 Views
26 Pages

Epigenetics of Genes Preferentially Expressed in Dissimilar Cell Populations: Myoblasts and Cerebellum

  • Melanie Ehrlich,
  • Kenneth C. Ehrlich,
  • Michelle Lacey,
  • Carl Baribault,
  • Sagnik Sen,
  • Pierre-Olivier Estève and
  • Sriharsa Pradhan

While studying myoblast methylomes and transcriptomes, we found that CDH15 had a remarkable preference for expression in both myoblasts and cerebellum. To understand how widespread such a relationship was and its epigenetic and biological correlates,...

  • Review
  • Open Access
6 Citations
5,474 Views
31 Pages

While reports on the generational inheritance of a parental response to stress have been widely reported in animals, the molecular mechanisms behind this phenomenon have only recently emerged. The booming interest in epigenetic inheritance has been f...

  • Review
  • Open Access
6 Citations
3,709 Views
15 Pages

Azanucleosides, such as 5-azacytidine and decitabine, are DNA demethylating agents used in the treatment of acute myeloid leukemia and myelodysplastic syndromes. Researchers continue to explore their utility in the treatment of other hematologic and...

  • Article
  • Open Access
6 Citations
3,437 Views
15 Pages

Graft-Derived Cell-Free DNA Quantification following Liver Transplantation Using Tissue-Specific DNA Methylation and Donor-Specific Genotyping Techniques: An Orthogonal Comparison Study

  • Daniel R. A. Cox,
  • Tess McClure,
  • Fan Zhang,
  • Boris Ka Leong Wong,
  • Adam Testro,
  • Su Kah Goh,
  • Vijayaragavan Muralidharan and
  • Alexander Dobrovic

Background: Graft-derived cell-free DNA (gdcfDNA) analysis has shown promise as a non-invasive tool for monitoring organ health following solid organ transplantation. A number of gdcfDNA analysis techniques have been described; however, the majority...

  • Article
  • Open Access
6 Citations
2,259 Views
14 Pages

Background/Objectives: Aberrant hypermethylation in the promoter regions of tumor suppressor genes facilitates the pathogenesis and progression of cancer. Therefore, inhibitors targeting DNA methyltransferase (DNMT) have been tested in clinical studi...

  • Review
  • Open Access
6 Citations
3,919 Views
25 Pages

Epigenomic Echoes—Decoding Genomic and Epigenetic Instability to Distinguish Lung Cancer Types and Predict Relapse

  • Alexandra A. Baumann,
  • Zholdas Buribayev,
  • Olaf Wolkenhauer,
  • Amankeldi A. Salybekov and
  • Markus Wolfien

Genomic and epigenomic instability are defining features of cancer, driving tumor progression, heterogeneity, and therapeutic resistance. Central to this process are epigenetic echoes, persistent and dynamic modifications in DNA methylation, histone...

  • Review
  • Open Access
5 Citations
4,211 Views
20 Pages

The mammalian sexes are distinguished by the X and Y chromosomes. Whereas males harbor one X and one Y chromosome, females harbor two X chromosomes. To equalize X-linked gene expression between the sexes, therian mammals have evolved X-chromosome ina...

  • Article
  • Open Access
5 Citations
3,485 Views
21 Pages

Angio-Long Noncoding RNA MALAT1 (rs3200401) and MIAT (rs1061540) Gene Variants in Ovarian Cancer

  • Manal S. Fawzy,
  • Afaf T. Ibrahiem,
  • Dalia Mohammad Osman,
  • Amany I. Almars,
  • Maali Subhi Alshammari,
  • Layan Tariq Almazyad,
  • Noof Daif Allah Almatrafi,
  • Renad Tariq Almazyad and
  • Eman A. Toraih

The genotyping of long non-coding RNA (lncRNA)-related single-nucleotide polymorphisms (SNPs) could be associated with cancer risk and/or progression. This study aimed to analyze the angiogenesis-related lncRNAs MALAT1 (rs3200401) and MIAT (rs1061540...

  • Article
  • Open Access
4 Citations
4,525 Views
21 Pages

Sex-Specific Associations between Prenatal Exposure to Di(2-ethylhexyl) Phthalate, Epigenetic Age Acceleration, and Susceptibility to Early Childhood Upper Respiratory Infections

  • Sarah M. Merrill,
  • Nicole Letourneau,
  • Gerald F. Giesbrecht,
  • Karlie Edwards,
  • Julia L. MacIsaac,
  • Jonathan W. Martin,
  • Amy M. MacDonald,
  • David W. Kinniburgh,
  • Michael S. Kobor and
  • The APrON Study Team
  • + 2 authors

Di(2-ethylhexyl) phthalate (DEHP) is a common plasticizer that can affect immune system development and susceptibility to infection. Aging processes (measured as epigenetic age acceleration (EAA)) may mediate the immune-related effects of prenatal ex...

  • Review
  • Open Access
4 Citations
3,285 Views
17 Pages

Retrotransposons and Diabetes Mellitus

  • Andromachi Katsanou,
  • Charilaos Kostoulas,
  • Evangelos Liberopoulos,
  • Agathocles Tsatsoulis,
  • Ioannis Georgiou and
  • Stelios Tigas

6 September 2024

Retrotransposons are invasive genetic elements, which replicate by copying and pasting themselves throughout the genome in a process called retrotransposition. The most abundant retrotransposons by number in the human genome are Alu and LINE-1 elemen...

  • Review
  • Open Access
4 Citations
5,755 Views
22 Pages

Orchestrating Asymmetric Expression: Mechanisms behind Xist Regulation

  • Samuel Jesus Luchsinger-Morcelle,
  • Joost Gribnau and
  • Hegias Mira-Bontenbal

Compensation for the gene dosage disequilibrium between sex chromosomes in mammals is achieved in female cells by repressing one of its X chromosomes through a process called X chromosome inactivation (XCI), exemplifying the control of gene expressio...

  • Review
  • Open Access
4 Citations
1,602 Views
27 Pages

Epigenetic Mechanisms of Plant Adaptation to Cadmium and Heavy Metal Stress

  • Eleonora Greco,
  • Emanuela Talarico,
  • Francesco Guarasci,
  • Marina Camoli,
  • Anna Maria Palermo,
  • Alice Zambelli,
  • Adriana Chiappetta,
  • Fabrizio Araniti and
  • Leonardo Bruno

Heavy metal and metalloid stress, particularly from toxic elements like cadmium (Cd), poses a growing threat to plant ecosystems, crop productivity, and global food security. Elevated concentrations of these contaminants can trigger cytotoxic and gen...

  • Review
  • Open Access
4 Citations
3,081 Views
35 Pages

Epigenetic regulation, particularly DNA methylation, plays a crucial role in plant adaptation to environmental stresses by modulating gene expression without altering the underlying DNA sequence. In response to major abiotic stresses such as salinity...

  • Article
  • Open Access
4 Citations
2,700 Views
13 Pages

Association of Toll-Like Receptor Gene Polymorphisms with Tuberculosis in HIV-Positive Participants

  • Svetlana Salamaikina,
  • Vitaly Korchagin,
  • Ekaterina Kulabukhova,
  • Konstantin Mironov,
  • Vera Zimina,
  • Alexey Kravtchenko and
  • Vasily Akimkin

Genetic factors in the HIV-background may play a significant role in the susceptibility to secondary diseases, like tuberculosis, which is the leading cause in mortality of HIV-positive people. Toll-like receptors (TLRs) are considered to be receptor...

  • Article
  • Open Access
4 Citations
4,474 Views
17 Pages

15 September 2023

Long non-coding RNAs (lncRNAs), comprising a significant portion of the human transcriptome, serve as vital regulators of cellular processes and potential disease biomarkers. However, the function of most lncRNAs remains unknown, and furthermore, exi...

  • Review
  • Open Access
4 Citations
5,138 Views
17 Pages

12 December 2023

Hematopoietic stem cells (HSCs) are essential for maintaining overall health by continuously generating blood cells throughout an individual’s lifespan. However, as individuals age, the hematopoietic system undergoes significant functional decl...

  • Article
  • Open Access
4 Citations
3,980 Views
16 Pages

Excessive Gestational Weight Gain Alters DNA Methylation and Influences Foetal and Neonatal Body Composition

  • Perla Pizzi Argentato,
  • João Victor da Silva Guerra,
  • Liania Alves Luzia,
  • Ester Silveira Ramos,
  • Mariana Maschietto and
  • Patrícia Helen de Carvalho Rondó

Background: Changes in body weight are associated with the regulation of DNA methylation (DNAm). In this study, we investigated the associations between maternal gestational weight gain-related DNAm and foetal and neonatal body composition. Methods:...

  • Opinion
  • Open Access
4 Citations
3,463 Views
13 Pages

This review paper highlights the importance of educating current and future professionals about epigenetic mechanisms and recognizing epigenetics as a crucial model for protection against ionizing radiation. Two basic models for radiation-induced DNA...

  • Review
  • Open Access
4 Citations
3,988 Views
15 Pages

15 September 2024

Many human diseases, such as malignant tumors and neurological diseases, have a complex pathophysiological etiology, often accompanied by aberrant epigenetic changes including various histone modifications. Plant homologous domain finger protein 8 (P...

  • Article
  • Open Access
3 Citations
3,263 Views
15 Pages

Maternal MicroRNA Profile Changes When LH Is Added to the Ovarian Stimulation Protocol: A Pilot Study

  • Fani Konstantinidou,
  • Martina Placidi,
  • Giovanna Di Emidio,
  • Liborio Stuppia,
  • Carla Tatone,
  • Valentina Gatta and
  • Paolo Giovanni Artini

While the use of follicle-stimulating hormone (FSH) in ovarian stimulation for in vitro fertilization (IVF) is an established practice, the use of luteinizing hormone (LH) remains debatable. MicroRNAs (miRNAs) are short, endogenous, non-coding transc...

  • Review
  • Open Access
3 Citations
4,715 Views
12 Pages

World Trade Center Exposure, DNA Methylation Changes, and Cancer: A Review of Current Evidence

  • Stephanie Tuminello,
  • Emelie Nguyen,
  • Nedim Durmus,
  • Ramazan Alptekin,
  • Muhammed Yilmaz,
  • Maria Cecilia Crisanti,
  • Matija Snuderl,
  • Yu Chen,
  • Yongzhao Shao and
  • Alan A. Arslan
  • + 2 authors

Introduction: Known carcinogens in the dust and fumes from the destruction of the World Trade Center (WTC) towers on 9 November 2001 included metals, asbestos, and organic pollutants, which have been shown to modify epigenetic status. Epigenome-wide...

  • Review
  • Open Access
3 Citations
5,812 Views
22 Pages

For about 30 years, SPEN has been the subject of research in many different fields due to its variety of functions and its conservation throughout a wide spectrum of species, like worms, arthropods, and vertebrates. To date, 216 orthologues have been...

  • Review
  • Open Access
3 Citations
4,514 Views
12 Pages

Pancreatic ductal adenocarcinoma (PDAC) remains one of the most lethal malignancies, characterized by its aggressive progression and dismal prognosis. Advances in epigenetic profiling, specifically DNA methylation analysis, have significantly deepene...

  • Article
  • Open Access
3 Citations
3,616 Views
13 Pages

Structural and Biochemical Characterization of the Nucleosome Containing Variants H3.3 and H2A.Z

  • Harry Jung,
  • Vladyslava Sokolova,
  • Gahyun Lee,
  • Victoria Rose Stevens and
  • Dongyan Tan

Variant H3.3, along with H2A.Z, is notably enriched at promoter regions and is commonly associated with transcriptional activation. However, the specific molecular mechanisms through which H3.3 influences chromatin dynamics at transcription start sit...

  • Article
  • Open Access
2 Citations
4,078 Views
16 Pages

Type 1 diabetes (T1D) is a metabolic disease resulting from progressive autoimmune destruction of insulin-producing pancreatic beta cells. Although the majority of beta cells are lost in T1D, a small subset undergoes senescence, a stress response inv...

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Epigenomes - ISSN 2075-4655