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Software, Volume 1, Issue 3
2022 September - 7 articles
Cover Story: To understand the performance of methods developed for the reconstruction of evolutionary histories of genes and species, it is indispensable to test such methods on reliable benchmark sets. Since the true histories are in almost all cases unknown, simulated data must be used. AsymmeTree is a flexible and easy-to-use Python package for the simulation of gene family and species histories as well as underlying genes. Those histories can be simulated to include common evolutionary mechanisms such as gene duplication, loss, conversion, and horizontal transfer. Different models can be used to generate realistic scenarios. AsymmeTree is freely available and allows the user to interact with, analyse, and possibly manipulate the simulated scenarios. View this paper
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Software - ISSN 2674-113X