Somatic Cancer Driver Mutation Analysis in Endometriosis with Tumor-like Presentations: A Case Series Study
Abstract
1. Introduction
2. Materials and Methods
2.1. Sample Selection
2.2. Preparation of Tissue for Whole-Exome Sequencing
2.3. Whole Exome Sequencing Data Analysis
2.4. Statistical Analysis
3. Results
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
- Bulun, S.E. Endometriosis. N. Engl. J. Med. 2009, 360, 268–279. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Wang, Y.; Nicholes, K.; Shih, I.M. The Origin and Pathogenesis of Endometriosis. Annu. Rev. Pathol. 2020, 15, 71–95. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Simoens, S.; Dunselman, G.; Dirksen, C.; Hummelshoj, L.; Bokor, A.; Brandes, I.; Brodszky, V.; Canis, M.; Colombo, G.L.; DeLeire, T.; et al. The burden of endometriosis: Costs and quality of life of women with endometriosis and treated in referral centres. Hum. Reprod. 2012, 27, 1292–1299. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Wilbur, M.A.; Shih, I.M.; Segars, J.H.; Fader, A.N. Cancer Implications for Patients with Endometriosis. Semin. Reprod. Med. 2017, 35, 110–116. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Chui, M.H.; Wang, T.L.; Shih, I.M. Endometriosis: Benign, malignant, or something in between? Oncotarget 2017, 8, 78263–78264. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Herington, J.L.; Bruner-Tran, K.L.; Lucas, J.A.; Osteen, K.G. Immune interactions in endometriosis. Expert Rev. Clin. Immunol. 2011, 7, 611–626. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Ahn, S.H.; Khalaj, K.; Young, S.L.; Lessey, B.A.; Koti, M.; Tayade, C. Immune-inflammation gene signatures in endometriosis patients. Fertil. Steril. 2016, 106, 1420–1431.e7. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Sisnett, D.J.; Zutautas, K.B.; Vo, D.H.N.; Ravishanker, K.; Holmes, J.P.; Wodz, A.; Tayade, C. Immune dysregulation in endometriosis: The T cell perspective. Front. Immunol. 2026, 17, 1712360. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Victory, R.; Diamond, M.P.; Johns, D.A. Villar’s nodule: A case report and systematic literature review of endometriosis externa of the umbilicus. J. Minim. Invasive Gynecol. 2007, 14, 23–32. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Andres, M.P.; Arcoverde, F.V.L.; Souza, C.C.C.; Fernandes, L.F.C.; Abrao, M.S.; Kho, R.M. Extrapelvic Endometriosis: A Systematic Review. J. Minim. Invasive Gynecol. 2020, 27, 373–389. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Dalkalitsis, A.; Salta, S.; Tsakiridis, I.; Dagklis, T.; Kalogiannidis, I.; Mamopoulos, A.; Daniilidis, A.; Athanasiadis, A.; Navrozoglou, I.; Paschopoulos, M.; et al. Inguinal endometriosis: A systematic review. Taiwan. J. Obstet. Gynecol. 2022, 61, 24–33. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Arakawa, T.; Ishihara, S. Omental Endometriosis. N. Engl. J. Med. 2021, 384, e21. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Grechukhina, O.; Petracco, R.; Popkhadze, S.; Massasa, E.; Paranjape, T.; Chan, E.; Flores, I.; Weidhaas, J.B.; Taylor, H.S. A polymorphism in a let-7 microRNA binding site of KRAS in women with endometriosis. EMBO Mol. Med. 2012, 4, 206–217. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Hossain, M.M.; Nakayama, K.; Shanta, K.; Razia, S.; Ishikawa, M.; Ishibashi, T.; Yamashita, H.; Sato, S.; Iida, K.; Kanno, K.; et al. Establishment of a Novel In Vitro Model of Endometriosis with Oncogenic KRAS and PIK3CA Mutations for Understanding the Underlying Biology and Molecular Pathogenesis. Cancers 2021, 13, 3174. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Su, W.; Cui, H.; Wu, D.; Yu, J.; Ma, L.; Zhang, X.; Huang, Y.; Ma, C. Suppression of TLR4-MyD88 signaling pathway attenuated chronic mechanical pain in a rat model of endometriosis. J. Neuroinflamm. 2021, 18, 65. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Wiegand, K.C.; Shah, S.P.; Al-Agha, O.M.; Zhao, Y.; Tse, K.; Zeng, T.; Senz, J.; McConechy, M.K.; Anglesio, M.S.; Kalloger, S.E.; et al. ARID1A Mutations in Endometriosis-Associated Ovarian Carcinomas. N. Engl. J. Med. 2010, 363, 1532–1543. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Zyla, R.E.; Olkhov-Mitsel, E.; Amemiya, Y.; Bassiouny, D.; Seth, A.; Djordjevic, B.; Nofech-Mozes, S.; Parra-Herran, C. CTNNB1 Mutations and Aberrant β-Catenin Expression in Ovarian Endometrioid Carcinoma: Correlation with Patient Outcome. Am. J. Surg. Pathol. 2021, 45, 68–76. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Anglesio, M.S.; Papadopoulos, N.; Ayhan, A.; Nazeran, T.M.; Noe, M.; Horlings, H.M.; Lum, A.; Jones, S.; Senz, J.; Seckin, T.; et al. Cancer-Associated Mutations in Endometriosis without Cancer. N. Engl. J. Med. 2017, 376, 1835–1848. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Suda, K.; Nakaoka, H.; Yoshihara, K.; Ishiguro, T.; Tamura, R.; Mori, Y.; Yamawaki, K.; Adachi, S.; Takahashi, T.; Kase, H.; et al. Clonal Expansion and Diversification of Cancer-Associated Mutations in Endometriosis and Normal Endometrium. Cell Rep. 2018, 24, 1777–1789. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Li, L.; Antero, M.F.; Zhang, M.; Chu, T.; Seckin, T.; Ayhan, A.; Pisanic, T.; Wang, T.L.; Cope, L.; Segars, J.; et al. Mutation and methylation profiles of ectopic and eutopic endometrial tissues. J. Pathol. 2021, 255, 387–398. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Lac, V.; Verhoef, L.; Aguirre-Hernandez, R.; Nazeran, T.M.; Tessier-Cloutier, B.; Praetorius, T.; Orr, N.L.; Noga, H.; Lum, A.; Khattra, J.; et al. Iatrogenic endometriosis harbors somatic cancer-driver mutations. Hum. Reprod. 2019, 34, 69–78. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Orr, N.L.; Albert, A.; Liu, Y.D.; Lum, A.; Hong, J.; Ionescu, C.L.; Senz, J.; Nazeran, T.M.; Lee, A.F.; Noga, H.; et al. KRAS mutations and endometriosis burden of disease. J. Pathol. Clin. Res. 2023, 9, 302–312. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Kurman, R.J.; Hedrick Ellenson, L.; Ronnett, B.M. (Eds.) Blaustein’s Pathology of the Female Genital Tract; Springer International Publishing: Berlin/Heidelberg, Germany, 2019. [Google Scholar] [CrossRef] [Scilit]
- Noe, M.; Ayhan, A.; Wang, T.L.; Shih, I.M. Independent development of endometrial epithelium and stroma within the same endometriosis. J. Pathol. 2018, 245, 265–269. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Li, L.; Yue, P.; Song, Q.; Yen, T.T.; Asaka, S.; Wang, T.L.; Beavis, A.L.; Fader, A.N.; Jiao, Y.; Yuan, G.; et al. Genome-wide mutation analysis in precancerous lesions of endometrial carcinoma. J. Pathol. 2021, 253, 119–128. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Wu, R.C.; Wang, P.; Lin, S.F.; Zhang, M.; Song, Q.; Chu, T.; Wang, B.G.; Kurman, R.J.; Vang, R.; Kinzler, K.; et al. Genomic landscape and evolutionary trajectories of ovarian cancer precursor lesions. J. Pathol. 2019, 248, 41–50. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Tokheim, C.J.; Papadopoulos, N.; Kinzler, K.W.; Vogelstein, B.; Karchin, R. Evaluating the evaluation of cancer driver genes. Proc. Natl. Acad. Sci. USA 2016, 113, 14330–14335. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Notzold, A.; Moubayed, P.; Sievers, H.H. Endometriosis in the thoracic aorta. N. Engl. J. Med. 1998, 339, 1002–1003. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Beavis, A.L.; Matsuo, K.; Grubbs, B.H.; Srivastava, S.A.; Truong, C.M.; Moffitt, M.N.; Maliglig, A.M.; Lin, Y.G. Endometriosis in para-aortic lymph nodes during pregnancy: Case report and review of literature. Fertil. Steril. 2011, 95, 2429.e9–2429.e13. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Centini, G.; Ginetti, A.; Colombi, I.; Cannoni, A.; Giorgi, M.; Ferreira, H.; Fedele, F.; Pacifici, M.; Martire, F.G.; Zupi, E.; et al. Endometriosis of the appendix: Prevalence, associated lesions, and proposal of pathogenetic hypotheses. A retrospective cohort study with prospectively collected data. Arch. Gynecol. Obstet. 2024, 310, 1669–1675. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- The Cancer Genome Atlas Research Network; Kandoth, C.; Schultz, N.; Cherniack, A.D.; Akbani, R.; Liu, Y.; Shen, H.; Robertson, A.G.; Pashtan, I.; Shen, R.; et al. Integrated genomic characterization of endometrial carcinoma. Nature 2013, 497, 67–73, Erratum in Nature 2013, 500, 242. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Vogelstein, B.; Papadopoulos, N.; Velculescu, V.E.; Zhou, S.; Diaz, L.A., Jr.; Kinzler, K.W. Cancer genome landscapes. Science 2013, 339, 1546–1558. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Ayhan, A.; Mao, T.-L.; Rahmanto, Y.S.; Zeppernick, F.; Ogawa, H.; Wu, R.C.; Wang, T.L.; Shih, I.M. Increased proliferation in atypical hyperplasia/endometrioid intraepithelial neoplasia of the endometrium with concurrent inactivation of ARID1A and PTEN tumour suppressors. J. Patho Clin. Res. 2015, 1, 186–193. [Google Scholar] [CrossRef] [Scilit]
- Suryo Rahmanto, Y.; Shen, W.; Shi, X.; Chen, X.; Yu, Y.; Yu, Z.C.; Miyamoto, T.; Lee, M.H.; Singh, V.; Asaka, R.; et al. Inactivation of Arid1a in the endometrium is associated with endometrioid tumorigenesis through transcriptional reprogramming. Nat. Commun. 2020, 11, 2717. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Mandal, J.; Yu, Z.C.; Shih, I.M.; Wang, T.L. ARID1A loss activates MAPK signaling via DUSP4 downregulation. J. Biomed. Sci. 2023, 30, 94. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Dinulescu, D.M.; Ince, T.A.; Quade, B.J.; Shafer, S.A.; Crowley, D.; Jacks, T. Role of K-ras and Pten in the development of mouse models of endometriosis and endometrioid ovarian cancer. Nat. Med. 2005, 11, 63–70. [Google Scholar] [PubMed]
- Cheng, C.W.; Licence, D.; Cook, E.; Luo, F.; Arends, M.J.; Smith, S.K.; Print, C.G.; Charnock-Jones, D.S. Activation of mutated K-ras in donor endometrial epithelium and stroma promotes lesion growth in an intact immunocompetent murine model of endometriosis. J. Pathol. 2011, 224, 261–269. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Yoo, J.Y.; Kim, T.H.; Fazleabas, A.T.; Palomino, W.A.; Ahn, S.H.; Tayade, C.; Schammel, D.P.; Young, S.L.; Jeong, J.W.; Lessey, B.A. KRAS Activation and over-expression of SIRT1/BCL6 Contributes to the Pathogenesis of Endometriosis and Progesterone Resistance. Sci. Rep. 2017, 7, 6765. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Pandya, D.; Tomita, S.; Rhenals, M.P.; Swierczek, S.; Reid, K.; Camacho-Vanegas, O.; Camacho, C.; Engelman, K.; Polukort, S.; RoseFigura, J.; et al. Mutations in cancer-relevant genes are ubiquitous in histologically normal endometrial tissue. Gynecol. Oncol. 2024, 185, 194–201. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Bulun, S.E. Endometriosis and ovulatory menstruation: Beyond the Sampson principle. J. Clin. Investig. 2025, 135, e188787. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Zhang, Q.; Zhu, F.; Tong, Y.; Shi, D.; Zhang, J. CHD4 R975H mutant activates tumorigenic pathways and promotes stemness and M2-like macrophage polarization in endometrial cancer. Sci. Rep. 2025, 14, 18617. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Daniloski, Z.; Smith, S. Loss of Tumor Suppressor STAG2 Promotes Telomere Recombination and Extends the Replicative Lifespan of Normal Human Cells. Cancer Res. 2017, 77, 5530–5542. [Google Scholar] [CrossRef] [Scilit] [PubMed]




| Tumor-like Endometriosis Characteristics (n = 14) | |
|---|---|
| Race, n (%) | |
| White | 4 (28.57) |
| Asian | 3 (21.43) |
| African American | 6 (42.86) |
| Other | 1 (7.14) |
| ASRM stage, n (%) | |
| Stage I | 0 (0) |
| Stage II | 2 (14.29) |
| Stage III | 0 |
| Stage IV | 12 (85.71) |
| Age at surgery (y), mean (SD) | 39.64 (9.32) |
| BMI at surgery (kg/m2), mean (SD) | 29.13 (7.69) |
| Other gynecological conditions, n (%) | |
| Fibroids, n (%) | 8 (57.14) |
| Adenomyosis, n (%) | 5 (35.71) |
| Pregnancy history, n (%) | |
| Nulliparous | 9 (64.29) |
| Parous | 5 (35.71) |
| Smoking history, n (%) | |
| Reports smoking | 4 (28.57) |
| Does not report smoking | 10 (71.43) |
| History of medical treatment for endometriosis, n (%) | 4 (28.57) |
| History of prior surgical management of endometriosis, n (%) | 8 (57.14) |
| Case Number | Lesions | Presenting Symptom(s) | Stage | CDM(s) | Hormonal Treatment | Surgical Treatment | Other GYN Conditions | Outcome |
|---|---|---|---|---|---|---|---|---|
| 1 | Umbilical nodule | Dysmenorrhea | 2 | None | Yes | No | Fibroids | Repeat surgery |
| 2 | Groin | Chronic groin pain | 4 | KRAS (c.35G>A; p.Gly12Asp) | No | No | None | Pursuing infertility treatment |
| 3 | Aorta | Chronic pelvic pain | 4 | CTNNB1 (c.599G>A; p.Arg200His), ARID1A (c.4336C>T; p.Arg1446Term) | No | Yes | Fibroids | Lost to follow-up |
| 4 | LN, colonic wall | Chronic pelvic pain, dysmenorrhea | 4 | None | No | No | Fibroids, Adenomyosis | Pain improved |
| 5 | Omentum | Chronic pelvic pain, dysmenorrhea | 4 | None | Yes | No | Adenomyosis | Lost to follow-up |
| 6 | Sigmoid colonic wall, LN | Dysmenorrhea, constipation, SBO | 4 | CHD4 (c.2924G>A; p.Arg975His), MYD88, (C.71C>T; P.ALA24VAL) STAG2 (c.3467+1G>A) | Yes | Yes | Adenomyosis | Pain improved |
| 7 | Omentum and rectal wall | Dysmenorrhea, constipation | 4 | None | No | No | None | Lost to follow-up |
| 8 | Rectosigmoid colonic wall | Chronic pelvic pain, SBO | 4 | KRAS (c.34G>T; p.Gly12Cys), ARID1A (c.197C>T; p.Pro66Leu) | No | Yes | Fibroids, Adenomyosis | Controlled by progestin |
| 9 | Sigmoid colonic wall | SBO, chronic pelvic pain | 4 | None | No | Yes | Fibroids, Adenomyosis | Post-menopausal after surgery |
| 10 | Colonic wall | Chronic pelvic pain | 4 | KRAS (c.35G>C; P.Gly12Ala) | No | Yes | Fibroids | Concern for recurrence |
| 11 | Appendix | Chronic pelvic pain | 4 | None | No | Yes | Fibroids | Pain improved |
| 12 | Appendix | Chronic pelvic pain, dyschezia | 2 | KRAS (c.35G>T; p.Gly12Val), PIK3CA (c.1035T>A; Asn345Lys) | No | Yes | Fibroids | Lost to follow-up |
| 13 | Appendix | Chronic pelvic pain, nausea, vomiting, SBO | 4 | None | Yes | Yes | None | Pain continued, controlled by progestin |
| 14 | Appendix | Chronic pelvic pain | 4 | None | No | No | None | Lost to follow-up |
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Chen, L.; Severino, E.; Wu, D.-S.; Singh, B.; Segars, J.; Shih, I.-M. Somatic Cancer Driver Mutation Analysis in Endometriosis with Tumor-like Presentations: A Case Series Study. Biomedicines 2026, 14, 1636. https://doi.org/10.3390/biomedicines14071636
Chen L, Severino E, Wu D-S, Singh B, Segars J, Shih I-M. Somatic Cancer Driver Mutation Analysis in Endometriosis with Tumor-like Presentations: A Case Series Study. Biomedicines. 2026; 14(7):1636. https://doi.org/10.3390/biomedicines14071636
Chicago/Turabian StyleChen, Lucy, Elizabeth Severino, Dao-Sian Wu, Bhuchitra Singh, James Segars, and Ie-Ming Shih. 2026. "Somatic Cancer Driver Mutation Analysis in Endometriosis with Tumor-like Presentations: A Case Series Study" Biomedicines 14, no. 7: 1636. https://doi.org/10.3390/biomedicines14071636
APA StyleChen, L., Severino, E., Wu, D.-S., Singh, B., Segars, J., & Shih, I.-M. (2026). Somatic Cancer Driver Mutation Analysis in Endometriosis with Tumor-like Presentations: A Case Series Study. Biomedicines, 14(7), 1636. https://doi.org/10.3390/biomedicines14071636

