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Entropy, Volume 20, Issue 8

2018 August - 78 articles

Cover Story: We apply Popcoen to various conformations of the Cas4 protein SSO0001 of Sulfolobus solfataricus, a protein that assembles to a decamer of known toroidal shape. We provide numerical evidence that the native state (NAT) of a SSO0001 monomer has a similar structure to the protomers of the oligomer, where NAT of the monomer is stabilized mainly entropically. Due to its large amount of configurational entropy, NAT has lower free energy than alternative conformations of very low enthalpy and solvation free-energy. Hence, SSO0001 serves as an example case where neglecting configurational entropy leads to incorrect conclusion. Our results imply that no refolding of the subunits is required during oligomerization which suggests that configurational entropy is employed by nature to largely enhance the rate of assembly. View this paper
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Articles (78)

  • Article
  • Open Access
5 Citations
5,252 Views
16 Pages

20 August 2018

Multi-robot formation control makes prerequisites for a team of robots to execute complex tasks cooperatively, which has been widely applied in both civilian and military scenarios. However, the limited precision of sensors and controllers may inevit...

  • Feature Paper
  • Article
  • Open Access
2 Citations
4,130 Views
17 Pages

20 August 2018

The Scrooge distribution is a probability distribution over the set of pure states of a quantum system. Specifically, it is the distribution that, upon measurement, gives up the least information about the identity of the pure state compared with all...

  • Article
  • Open Access
16 Citations
5,690 Views
20 Pages

20 August 2018

Bayesian network structure learning from data has been proved to be a NP-hard (Non-deterministic Polynomial-hard) problem. An effective method of improving the accuracy of Bayesian network structure is using experts’ knowledge instead of only u...

  • Article
  • Open Access
10 Citations
5,554 Views
22 Pages

20 August 2018

The use of linear methods, for example, the Combined Synthetic Aperture Focusing Technique (C–SAFT), does not allow one to obtain images with high resolution and low noise, especially structural noise in all cases. Non-linear methods should imp...

  • Article
  • Open Access
5 Citations
4,802 Views
12 Pages

20 August 2018

Realistic modeling of complex physical phenomena is always quite a challenging task. The main problem usually concerns the uncertainties surrounding model input parameters, especially when not all information about a modeled phenomenon is known. In s...

  • Article
  • Open Access
1 Citations
4,337 Views
14 Pages

19 August 2018

This paper proposes dynamic clustering and user scheduling for previously conceived inter-cluster interference cancellation scheme on ultra-high density distributed antenna system (UHD-DAS). UHD-DAS is composed of one central unit (CU) and densely de...

  • Review
  • Open Access
4 Citations
5,627 Views
15 Pages

19 August 2018

A model of signal transduction from the perspective of informational thermodynamics has been reported in recent studies, and several important achievements have been obtained. The first achievement is that signal transduction can be modelled as a bin...

  • Article
  • Open Access
4 Citations
4,563 Views
17 Pages

Study of Geo-Electric Data Collected by the Joint EMSEV-Bishkek RS-RAS Cooperation: Possible Earthquake Precursors

  • Konstantina Papadopoulou,
  • Efthimios Skordas,
  • Jacques Zlotnicki,
  • Toshiyasu Nagao and
  • Anatoly Rybin

18 August 2018

By employing the cross-correlogram method, in geo-electric data from the area of Kyrgyzstan for the period 30 June 2014–10 June 2015, we identified Anomalous Telluric Currents (ATC). From a total of 32 ATC after taking into consideration the el...

  • Article
  • Open Access
29 Citations
5,072 Views
19 Pages

18 August 2018

In this article, we investigated entropy generation and heat transfer analysis in a viscous flow induced by a horizontally moving Riga plate in the presence of strong suction. The viscosity and thermal conductivity of the fluid are taken to be temper...

  • Article
  • Open Access
5 Citations
5,380 Views
41 Pages

17 August 2018

The gate array version of quantum computation uses logical gates adopting convenient forms for computational algorithms based on the algorithms classical computation. Two-level quantum systems are the basic elements connecting the binary nature of cl...

  • Article
  • Open Access
11 Citations
4,208 Views
16 Pages

17 August 2018

Under complicated conditions, the extraction of a multi-fault in gearboxes is difficult to achieve. Due to improper selection of methods, leakage diagnosis or misdiagnosis will usually occur. Ensemble Empirical Mode Decomposition (EEMD) often causes...

  • Article
  • Open Access
17 Citations
5,306 Views
13 Pages

Permutation Entropy Based on Non-Uniform Embedding

  • Mei Tao,
  • Kristina Poskuviene,
  • Nizar Faisal Alkayem,
  • Maosen Cao and
  • Minvydas Ragulskis

17 August 2018

A novel visualization scheme for permutation entropy is presented in this paper. The proposed scheme is based on non-uniform attractor embedding of the investigated time series. A single digital image of permutation entropy is produced by averaging a...

  • Article
  • Open Access
11 Citations
4,959 Views
18 Pages

17 August 2018

We report the time-evolution of Probability Density Functions (PDFs) in a toy model of self-organised shear flows, where the formation of shear flows is induced by a finite memory time of a stochastic forcing, manifested by the emergence of a bimodal...

  • Article
  • Open Access
9 Citations
4,656 Views
6 Pages

16 August 2018

The pigeonhole principle upholds the idea that by ascribing to three different particles either one of two properties, we necessarily end up in a situation when at least two of the particles have the same property. In quantum physics, this principle...

  • Article
  • Open Access
4 Citations
3,992 Views
14 Pages

16 August 2018

We develop a useful model considering an atom-field system interaction in the framework of pseudoharmonic oscillators. We examine qualitatively the different physical quantities for a two-level atom (TLA) system interacting with a quantized coherent...

  • Article
  • Open Access
39 Citations
5,095 Views
10 Pages

New Estimations for Shannon and Zipf–Mandelbrot Entropies

  • Muhammad Adil Khan,
  • Zaid Mohammad Al-sahwi and
  • Yu-Ming Chu

16 August 2018

The main purpose of this paper is to find new estimations for the Shannon and Zipf–Mandelbrot entropies. We apply some refinements of the Jensen inequality to obtain different bounds for these entropies. Initially, we use a precise convex funct...

  • Article
  • Open Access
71 Citations
13,674 Views
34 Pages

A Decomposition Method for Global Evaluation of Shannon Entropy and Local Estimations of Algorithmic Complexity

  • Hector Zenil,
  • Santiago Hernández-Orozco,
  • Narsis A. Kiani,
  • Fernando Soler-Toscano,
  • Antonio Rueda-Toicen and
  • Jesper Tegnér

15 August 2018

We investigate the properties of a Block Decomposition Method (BDM), which extends the power of a Coding Theorem Method (CTM) that approximates local estimations of algorithmic complexity based on Solomonoff–Levin’s theory of algorithmic...

  • Article
  • Open Access
29 Citations
4,915 Views
20 Pages

14 August 2018

In this paper, a novel method with cross-wavelet singular entropy (XWSE)-based feature extractor and support vector machine (SVM) is proposed for analog circuit fault diagnosis. Primarily, cross-wavelet transform (XWT), which possesses a good capabil...

  • Article
  • Open Access
10 Citations
5,509 Views
15 Pages

13 August 2018

Recently, the accuracy of voice authentication system has increased significantly due to the successful application of the identity vector (i-vector) model. This paper proposes a new method for i-vector extraction. In the method, a perceptual wavelet...

  • Article
  • Open Access
11 Citations
8,889 Views
13 Pages

13 August 2018

When constructing discrete (binned) distributions from samples of a data set, applications exist where it is desirable to assure that all bins of the sample distribution have nonzero probability. For example, if the sample distribution is part of a p...

  • Article
  • Open Access
32 Citations
5,004 Views
15 Pages

13 August 2018

Multiscale entropy (MSE), as a complexity measurement method of time series, has been widely used to extract the fault information hidden in machinery vibration signals. However, the insufficient coarse graining in MSE will result in fault pattern in...

  • Article
  • Open Access
50 Citations
5,790 Views
43 Pages

13 August 2018

We illustrate how computer-aided methods can be used to investigate the fundamental limits of the caching systems, which are significantly different from the conventional analytical approach usually seen in the information theory literature. The line...

  • Article
  • Open Access
3 Citations
3,503 Views
7 Pages

9 August 2018

In this paper, we investigated the modeling of the pathological features of the influenza disease on the human speech. The presented work is novel research based on a real database and a new combination of previously used methods, discrete wavelet tr...

  • Article
  • Open Access
19 Citations
5,209 Views
25 Pages

Fuzzy and Sample Entropies as Predictors of Patient Survival Using Short Ventricular Fibrillation Recordings during out of Hospital Cardiac Arrest

  • Beatriz Chicote,
  • Unai Irusta,
  • Elisabete Aramendi,
  • Raúl Alcaraz,
  • José Joaquín Rieta,
  • Iraia Isasi,
  • Daniel Alonso,
  • María Del Mar Baqueriza and
  • Karlos Ibarguren

9 August 2018

Optimal defibrillation timing guided by ventricular fibrillation (VF) waveform analysis would contribute to improved survival of out-of-hospital cardiac arrest (OHCA) patients by minimizing myocardial damage caused by futile defibrillation shocks and...

  • Article
  • Open Access
15 Citations
4,461 Views
17 Pages

Using the Data Agreement Criterion to Rank Experts’ Beliefs

  • Duco Veen,
  • Diederick Stoel,
  • Naomi Schalken,
  • Kees Mulder and
  • Rens Van de Schoot

9 August 2018

Experts’ beliefs embody a present state of knowledge. It is desirable to take this knowledge into account when making decisions. However, ranking experts based on the merit of their beliefs is a difficult task. In this paper, we show how expert...

  • Article
  • Open Access
20 Citations
6,519 Views
11 Pages

9 August 2018

The refinement axiom for entropy has been provocative in providing foundations of information theory, recognised as thoughtworthy in the writings of both Shannon and Jaynes. A resolution to their concerns has been provided recently by the discovery t...

  • Article
  • Open Access
7 Citations
5,836 Views
17 Pages

Bayesian Optimization Based on K-Optimality

  • Liang Yan,
  • Xiaojun Duan,
  • Bowen Liu and
  • Jin Xu

9 August 2018

Bayesian optimization (BO) based on the Gaussian process (GP) surrogate model has attracted extensive attention in the field of optimization and design of experiments (DoE). It usually faces two problems: the unstable GP prediction due to the ill-con...

  • Article
  • Open Access
5 Citations
4,171 Views
13 Pages

Thermodynamic Analysis of Irreversible Desiccant Systems

  • Niccolò Giannetti,
  • Seiichi Yamaguchi,
  • Andrea Rocchetti and
  • Kiyoshi Saito

9 August 2018

A new general thermodynamic mapping of desiccant systems’ performance is conducted to estimate the potentiality and determine the proper application field of the technology. This targets certain room conditions and given outdoor temperature and...

  • Article
  • Open Access
8 Citations
4,347 Views
26 Pages

9 August 2018

In a previous work we devised a framework to derive generalised gradient systems for an evolution equation from the large deviations of an underlying microscopic system, in the spirit of the Onsager–Machlup relations. Of particular interest is...

  • Article
  • Open Access
3 Citations
3,797 Views
19 Pages

8 August 2018

The isomorphism problem involves judging whether two graphs are topologically the same and producing structure-preserving isomorphism mapping. It is widely used in various areas. Diverse algorithms have been proposed to solve this problem in polynomi...

  • Article
  • Open Access
3 Citations
3,236 Views
19 Pages

8 August 2018

This article deals with new concepts in a product MV-algebra, namely, with the concepts of Rényi entropy and Rényi divergence. We define the Rényi entropy of order q of a partition in a product MV-algebra and its conditional vers...

  • Article
  • Open Access
1 Citations
4,368 Views
10 Pages

Entropic Stabilization of Cas4 Protein SSO0001 Predicted with Popcoen

  • Martin Goethe,
  • Ignacio Fita and
  • J. Miguel Rubi

7 August 2018

Popcoen is a method for configurational entropy estimation of proteins based on machine-learning. Entropy is predicted with an artificial neural network which was trained on simulation trajectories of a large set of representative proteins. Popcoen i...

  • Article
  • Open Access
4 Citations
4,302 Views
19 Pages

7 August 2018

A single-leaf type paddle heat exchanger with molten salt as the working fluid is a proper option in high temperature heating processes of materials. In this paper, based on computational fluid dynamics (CFD) simulations, we present the thermo-fluid...

  • Article
  • Open Access
8 Citations
4,940 Views
16 Pages

7 August 2018

Statistics of heat transfer in two-dimensional (2D) turbulent Rayleigh-Bénard (RB) convection for Pr=6,20,100 and 106 are investigated using the lattice Boltzmann method (LBM). Our results reveal that the large scale circulation is gradually b...

  • Article
  • Open Access
88 Citations
8,977 Views
14 Pages

7 August 2018

We compare and contrast the statistical physics and quantum physics inspired approaches for unsupervised generative modeling of classical data. The two approaches represent probabilities of observed data using energy-based models and quantum states,...

  • Feature Paper
  • Article
  • Open Access
5 Citations
7,047 Views
13 Pages

7 August 2018

The nature of thermal phenomena is still elusive and sometimes misconstrued. Starting from Lavoisier, who presumed that caloric as a weightless substance is conserved, to Sadi Carnot who erroneously assumed that work is extracted while caloric is con...

  • Article
  • Open Access
7 Citations
6,350 Views
13 Pages

7 August 2018

We analyze changes in the thermodynamic properties of a spin system when it passes from the classical two-dimensional Ising model to the spin glass model, where spin-spin interactions are random in their values and signs. Formally, the transition red...

  • Article
  • Open Access
14 Citations
4,825 Views
17 Pages

An Adaptive Weight Method for Image Retrieval Based Multi-Feature Fusion

  • Xiaojun Lu,
  • Jiaojuan Wang,
  • Xiang Li,
  • Mei Yang and
  • Xiangde Zhang

6 August 2018

With the rapid development of information storage technology and the spread of the Internet, large capacity image databases that contain different contents in the images are generated. It becomes imperative to establish an automatic and efficient ima...

  • Article
  • Open Access
12 Citations
3,952 Views
12 Pages

Enhancing of Self-Referenced Continuous-Variable Quantum Key Distribution with Virtual Photon Subtraction

  • Hai Zhong,
  • Yijun Wang,
  • Xudong Wang,
  • Qin Liao,
  • Xiaodong Wu and
  • Ying Guo

6 August 2018

The scheme of the self-referenced continuous-variable quantum key distribution (SR CV-QKD) has been experimentally demonstrated. However, because of the finite dynamics of Alice’s amplitude modulator, there will be an extra excess noise that is...

  • Article
  • Open Access
50 Citations
8,104 Views
17 Pages

6 August 2018

Sample entropy (SampEn) has been used to quantify the regularity or predictability of human gait signals. There are studies on the appropriate use of this measure for inter-stride spatio-temporal gait variables. However, the sensitivity of this measu...

  • Article
  • Open Access
8 Citations
4,230 Views
24 Pages

4 August 2018

This study proposed a pressure driven entropy method (PDEM) that determines a priority order of pressure gauge locations, which enables the impact of abnormal condition (e.g., pipe failures) to be quantitatively identified in water distribution netwo...

  • Article
  • Open Access
3 Citations
4,850 Views
27 Pages

Information-Theoretical Analysis of the Neural Code in the Rodent Temporal Lobe

  • Melisa B. Maidana Capitán,
  • Emilio Kropff and
  • Inés Samengo

3 August 2018

In the study of the neural code, information-theoretical methods have the advantage of making no assumptions about the probabilistic mapping between stimuli and responses. In the sensory domain, several methods have been developed to quantify the amo...

  • Article
  • Open Access
3,669 Views
8 Pages

3 August 2018

The current definition of a conditional probability enables one to update probabilities only on the basis of stochastic information. This paper provides a definition for conditional probability with non-stochastic information. The definition is deriv...

  • Article
  • Open Access
5 Citations
6,254 Views
27 Pages

3 August 2018

We consider the maximum entropy Markov chain inference approach to characterize the collective statistics of neuronal spike trains, focusing on the statistical properties of the inferred model. To find the maximum entropy Markov chain, we use the the...

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Entropy - ISSN 1099-4300