Search Results (20)

Striped catfish, Pangasianodon hypophthalmus, has recently emerged as a promising candidate for Egyptian aquaculture owing to its rapid growth; however, under intensive culture, it is vulnerable to Aeromonas hydrophila. The efficacy of dietary supplementation with effective probiotic microorganisms (EPMs) in enhancing growth performance, feed utilization, physiological health, and disease resistance of P. hypophthalmus against A. hydrophila challenge was evaluated. A 90-day feeding trial was conducted with 300 fish randomly distributed into four triplicate groups (25 fish per replicate) reared in 12 indoor fiberglass tanks: a control and three groups receiving EPMs at inclusion levels of 1.5%, 3%, and 4.5%. The results showed significant, dose-dependent improvements across all EPMs-supplemented groups in survival, growth rates, feed utilization, and hematological parameters (RBC, Hb, PCV, WBC, and lymphocytes). Dietary EPMs led to significant improvements (p ≤ 0.001) in digestive efficiency, protein and lipid metabolism, antioxidant enzyme activity, immune performance, and the ability of striped catfish to withstand A. hydrophila infection. Hepatobiliary enzyme activities (ALT, AST, and ALKP), glucose levels, lipid profile markers, and hepatic MDA exhibited a significant linear decrease (p ≤ 0.0001) with increasing EPMs levels. The gut microbial composition showed a dose-dependent increase in beneficial lactic acid bacteria (LAB) and a reduction in TAPC, pathogenic coliforms (TFCC), and Vibrio spp. (TVC). These results demonstrate the dose-dependent effects of EPMs on enhancing aquafeed efficiency, overall health, and innate immunity in striped catfish. Full article

Malondialdehyde (MDA) is a reactive carbonyl compound produced through lipid peroxidation during feed storage, which poses a significant threat to fish health. This study aimed to evaluate the effects of dietary MDA on the growth rate, gastrointestinal health, and muscle quality of striped catfish (Pangasianodon hypophthalmus). A basal diet (M0) containing 34% crude protein and 10.5% crude lipid was formulated. Each group was sprayed with malondialdehyde solution (0, 5, 10, 20, 40, and 80 mg/kg, on dietary crude lipid basis; 0, 0.53, 1.07, 2.13, 4.26, and 8.52 mg/kg, on dietary basis) before feeding, respectively. Each diet was randomly assigned to triplicates of 30 striped catfish (initial weight 31.38 g) per net cage. After 8 weeks, dietary inclusion of MDA regardless of level significantly depressed the growth rate and feed utilization. The extent of structural damage to the gastrointestinal tract increased progressively with increasing dietary MDA levels. The extent of damage to the intestinal biological barrier (intestinal microbial structure), chemical barrier (trypsin, lipase, amylase, and maltase activity), physical barrier (zonula occludent-2, occludin, claudin 7α, and claudin 12 relative expression), and immune barrier (contents of complement 4, complement 3, immunoglobulin M, and lysozyme activity) was dose-related to dietary MDA. Moreover, a linear decline in the activities of intestinal antioxidant enzymes (catalas, superoxide dismutase, et al.) and anti-inflammatory factor (transforming growth factor beta1, interleukin 10) relative expression was noted alongside an increase in dietary MDA content. In contrast, the relative expression levels of intestinal inflammatory factor (interleukin 8, transcription factor p65, tumor necrosis factor alpha) relative expression displayed an opposing trend. Additionally, dietary MDA exerted a linear influence on muscle color and texture characteristics. In conclusion, high doses of MDA (5–80 mg/kg) reduced the growth performance of striped catfish, attributed to linear damage to the gastrointestinal tract, a linear decrease in antioxidant function, and the occurrence of an inflammatory response. High doses of MDA (>40 mg/kg) were observed to significantly increase dorsal muscle b-value and induce muscle yellowing. Full article

Edwardsiella ictaluri is responsible for causing bacillary necrosis (BNP) in striped catfish (Pangasianodon hypophthalmus) in Vietnam. This study offers a comprehensive genomic characterization of E. ictaluri to enhance understanding of the molecular epidemiology, virulence, and antimicrobial resistance. E. ictaluri isolates were collected from diseased striped catfish in the Mekong Delta. The species was confirmed through PCR. Antimicrobial susceptibility testing was conducted using minimum inhibitory concentrations for commonly used antimicrobials. Thirty representative isolates were selected for whole genome sequencing to delineate their genomic profiles and phylogeny. All strains belonged to ST-26 and exhibited genetic relatedness, differing by a maximum of 90 single nucleotide polymorphisms. Most isolates carried multiple antimicrobial resistance genes, with the tet(A) gene present in 63% and floR in 77% of the genomes. The ESBL gene, bla_CTX-M-15, was identified in 30% of the genomes. Three plasmid replicon types were identified: IncA, p0111, and IncQ1. The genomes clustered into two clades based on their virulence gene profile, one group with the T3SS genes and one without. The genetic similarity among Vietnamese isolates suggests that disease spread occurs within the Mekong region, underscoring the importance of source tracking, reservoir identification, and implementation of necessary biosecurity measures to mitigate spread of BNP. Full article

Diseases pose a significant and pressing concern for the sustainable development of the aquaculture sector, particularly as their impact continues to grow due to climatic shifts such as rising water temperatures. While various approaches, ranging from biosecurity measures to vaccines, have been devised to combat infectious diseases, their efficacy is disease and species specific and contingent upon a multitude of factors. The fields of genetics and genomics offer effective tools to control and prevent disease outbreaks in aquatic animal species. In this study, we present the key findings from our recent research, focusing on the genetic resistance to three specific diseases: White Spot Syndrome Virus (WSSV) in white shrimp, Bacterial Necrotic Pancreatitis (BNP) in striped catfish, and skin fluke (a parasitic ailment) in yellowtail kingfish. Our investigations reveal that all three species possess substantial heritable genetic components for disease-resistant traits, indicating their potential responsiveness to artificial selection in genetic improvement programs tailored to combat these diseases. Also, we observed a high genetic association between disease traits and survival rates. Through selective breeding aimed at enhancing resistance to these pathogens, we achieved substantial genetic gains, averaging 10% per generation. These selection programs also contributed positively to the overall production performance and productivity of these species. Although the effects of selection on immunological traits or immune responses were not significant in white shrimp, they yielded favorable results in striped catfish. Furthermore, our genomic analyses, including shallow genome sequencing of pedigreed populations, enriched our understanding of the genomic architecture underlying disease resistance traits. These traits are primarily governed by a polygenic nature, with numerous genes or genetic variants, each with small effects. Leveraging a range of advanced statistical methods, from mixed models to machine and deep learning, we developed prediction models that demonstrated moderate-to-high levels of accuracy in forecasting these disease-related traits. In addition to genomics, our RNA-seq experiments identified several genes that undergo upregulation in response to infection or viral loads within the populations. Preliminary microbiome data, while offering limited predictive accuracy for disease traits in one of our studied species, underscore the potential for combining such data with genome sequence information to enhance predictive power for disease traits in our populations. Lastly, this paper briefly discusses the roles of precision agriculture systems and AI algorithms and outlines the path for future research to expedite the development of disease-resistant genetic lines tailored to our target species. In conclusion, our study underscores the critical role of genetics and genomics in fortifying the aquaculture sector against the threats posed by diseases, paving the way for more sustainable and resilient aquaculture development. Full article

Striped catfish Pangasianodon hypopthalmus (Sauvage, 1878) is a flagship catfish species of the Mekong River region, a commercially valuable food fish that is important in freshwater fisheries, and a popular aquaculture species in many Asian countries. The species was assessed as “Endangered” by the International Union for Conservation of Nature (IUCN) due to range contraction and declining abundance, though the status of the species’ wild population in Cambodia, a critical habitat for the species, is not well understood. Here, we assess the population status of the striped catfish in Cambodia using multiple sources, including time-series catch data and length frequency distribution data from a commercial fishery (stationary trawl bagnet or dai) operated in the Tonle Sap River from 1998/99 to 2017/18 and larval drift data monitored in the Mekong River in Phnom Penh from 2004 to 2018. We found that there was a significant decline (R² = 0.54, p = 0.0002) in the catch (metric tonnes) of the striped catfish from the commercial dai fishery over the last two decades. Similarly, length-based indicator analysis indicates that striped catfish mean length and abundance have both declined over the study period, raising concerns about the sustainability of river catfish fisheries. Moreover, long-term larval drift monitoring in Mekong River shows that there was a marginally significant decline in the quantity of striped catfish larvae/juvenile drifting downstream to the lower floodplain over the last decade. Changes in flood index (extent and duration of flood) in the Tonle Sap floodplain affected by the Mekong’s flow are likely key factors driving the decline of the wild populations of the striped catfish. Both larval fish abundance and floodplain fish harvests have a significant positive relationship with Mekong flow and flood extent. Indiscriminate fishing exacerbates pressures on striped catfish stocks. Therefore, actions such as maintaining natural seasonal flows (flood timing, extent, and duration) to the Tonle Sap floodplain and protecting migratory fish stocks from overharvest and habitat fragmentation are essential to the persistence of stocks of striped catfish and other large-bodied migratory fishes that utilize both the Cambodian Mekong and Tonle Sap floodplains. Full article

Environmental salinity is an important abiotic factor that directly affects the growth, metabolism, osmoregulatory processes, and physiological performance of fish. Herein, the effects of long-term salinity stress on juvenile Pangasianodon hypophthalmus have been evaluated. Fish were allotted in five triplicate groups and exposed to five different salinities (0.0, 4.0, 8.0, 12.0, and 16.0‰) for 56 days. After exposure, the final weight, weight gain percent, and specific growth rate were significantly decreased in groups reared in 8‰, 12‰, and 16‰ salinities. The feed intake was also significantly reduced in groups raised in water salinities of 12‰ and 16‰ compared with other groups. Conversely, the feed conversion ratio values were significantly increased in groups reared in water salinities between 8‰ and 16‰ compared with other groups. The lowest survival rates were observed in groups reared at salinities of 12‰ and 16‰ (91.1% and 77.8%, respectively). Body moisture (%) was significantly decreased, while crude protein and crude lipids (%) were significantly increased in groups exposed to salinities ranging from 8.0‰ to 16.0‰. Stress biomarkers (such as blood glucose, lactate, and cortisol levels) and oxidative stress indicators (such as carbonyl proteins, malondialdehyde (MDA), superoxide dismutase (SOD), catalase (CAT), and glutathione peroxidase (GPX)) were significantly increased in groups exposed to different salinities compared with the control group, and their highest levels were in the group exposed to 16‰ salinity. The histoarchitectural changes were different among groups in relation to the salinity level. Moreover, the scored histopathological lesions showed a significant increase in groups exposed to different salinities compared with the control, and the highest scores were reported in groups exposed to the highest salinities (12‰ and 16‰). Based on the fitting curves, the present study suggests that P. hypophthalmus could tolerate salinities up to 8.0‰ with no mortalities; however, 4‰ salinity was more suitable with no adverse effects on the growth and little impact on histology and physiological responses. Full article

Fish processing produces large amounts of fish waste. Instead of disposing of it, it is wiser to recover the valuable resource for high-value-added products. Our study proposed a process using carbon dioxide-acidified water as a green solvent under supercritical conditions to successfully recover collagen/gelatin from the skin and bone of striped catfish. The optimum extraction conditions were obtained at 75 bar, 37 °C, and 24 h. The yields from the dry skin and bone mass were around 37% and 8%, respectively. The extracted products were characterized by Fourier-transformed infrared spectroscopy to study the functional groups, scanning electron microscopy to evaluate the morphology, sodium dodecyl-sulfate polyacrylamide gel electrophoresis to study the protein pattern, UV–vis analysis to measure the absorption peak, and thermal gravimetric analysis to determine the denaturation temperature. The results show the viability of the proposed method on an industrial scale. The characteristics of the extracted product show promising results and potential for being developed further in many applications such as biomaterial engineering in healthcare or natural polymer-based absorbent material for efficient removal of heavy metals from water and wastewater. Full article

A 56-day feeding trial investigated the effects of dietary histamine on the antioxidant capacity, gastric and intestinal barrier functions, and growth performance of striped catfish (Pangasianodon hypophthalmus). Seven isonitrogenous (34.0% crude protein) and isolipidic (10.5% crude lipid) diets were formulated with supplemental 0, 15, 30, 60, 120, 240, and 480 mg/kg of histamine, named H0, H15, H30, H60, H120, H240, and H480 group, respectively. Results showed that the weight gain rate, specific growth rate, relative intestinal length in the H240 and H480 groups, and the condition factors in the H480 group were significantly lower than those in the H0 group. Intestinal total antioxidant capacity, peroxidase, catalase, superoxide dismutase, glutathione peroxidase, and glutathione reductase activities in the H480 group were significantly lower than those in the H0 group, whereas intestinal malondialdehyde content exhibited the opposite trend. Intestinal complement 3, complement 4, immunoglobulin M, and Recombinant Mucin 2 in the H480 group were significantly lower than those in the H0 group, in contrast to intestinal lipopolysaccharide content. Intestinal IL-10 gene expression in the H480 group was significantly lower than that in the H0 group, whereas the TNF-α, IL-1, IL-6, and IL-8 gene expression exhibited opposite results. Scanning and transmission electron microscopic observation of the gastrointestinal tract revealed severe damage to the gastric mucosa and intestinal epithelium in the H480 group. The abundance of Treponema in the histamine groups was significantly higher than that in the H0 group. These results indicated that high dietary histamine decreases intestinal immunity and antioxidant capacity, inducing digestive tract oxidative damage and ultimately decreasing the growth of striped catfish. Full article

The present study evaluated the impacts of powdered Astragalus membranaceus extract (AME) on the growth, physiological responses, and serum immunity of Pangasianodon hypophthalmus juveniles. Four test diets were formulated to include varying AME levels as 0.0 (control), 1.5 (AME1.5), 3.0 (AME3.0), and 4.5 (AME4.5) g/kg. Fish weighing approximately 11.50 g were stocked into four triplicate groups and hand-fed on the test diets three times daily for two months. At 60 days post-feeding, the growth performance, including weight gain and the specific growth rate, was increased quadratically (R² > 0.90) with increasing AME inclusion levels. An improvement in the feed intake and feed conversion ratio were also noticed in groups fed at different AME levels. The whole-body and amino acid composition were unaffected by the test diets. A significant quadratic trend in the digestive enzymes (lipase, α-amylase, and protease) was found along with increasing AME inclusion levels. Liver enzymes associated with liver functions were improved by AME dietary inclusion levels. Meanwhile, the blood urea nitrogen, uric acid, and creatinine values were unaffected by AME dietary inclusion. On the other hand, serum immunity (lysozyme and total Igs) was elevated with a significant quadratic trend along with increasing AME dietary inclusion levels. Liver MDA levels decreased with increasing AME levels. Liver CAT, GPx, and SOD enzyme activities demonstrated a significant increasing trend along with dietary AME inclusion. The aforementioned effects of dietary AME on P. hypophthalmus health underpinned the potentiality of AME to be used as a phyto-additive to improve the functionality of aquafeed. Full article

The Tonle Sap Lake in Cambodia supports several species of threatened megafish and contains one of the largest networks of freshwater fish reserves in the world. Despite these traits, this system remains understudied in terms of its utility for endangered fish conservation and restoration. This study was the first of a series of planned fish releases designed to test the effectiveness of conservation supplementation programs in the Tonle Sap Lake. In March 2022 (during the dry season), 1582 captive-reared fishes, including 1538 striped catfish Pangasianodon hypopthalmus, 42 giant barb Catlocarpio siamensis, and two Mekong giant catfish Pangasianodon gigas, were tagged and released into a 986-hectare fish reserve to assess post-release dispersal and survival. Brightly colored external tags with unique identification numbers were used to facilitate tag returns. A high-profile release event was held to raise awareness about the activity, bringing attention to the importance of fish reserves and endangered species conservation, and disseminating information about the research and tag return and reward program. This, in concert with other efforts, served to be an important education and outreach tool and increased tag return rates. We found that mortality from fishing was rapid and very high. Nineteen percent of released fishes were recaptured in the first 2 days after the fish release, and 46% were recaptured by day 83 after the release, indicating intense fishing pressure on the Tonle Sap Lake fisheries. Eighty percent of recaptured fishes were caught in stationary gill nets, most within 10 km of the release site. Fishing mortality rates were independent of fish size or source (pond-reared or cage-reared). Environmental DNA (eDNA) was found to be capable of detecting each of these species’ presence in the water at the release site and could prove to be a useful tool for endangered species monitoring and restoration. Future research should explore alternative release timing, release location, and other methods of increasing post-release survival. Ultimately, underlying sources of mortality, especially fishing, will need to be addressed for conservation supplementation programs to succeed in the Tonle Sap Lake. Conservation supplementation should not be viewed as a substitute for more fundamental conservation measures, such as maintenance of environmental flows, preservation of ecological connectivity, and science-based fisheries management. Full article

The striped catfish, Pangasianodon hypophthalmus is an important freshwater aquaculture species in Southeast Asian countries due to its rapid growth. The growth hormone receptor (GHR) is a significant regulatory factor for the growth axis and has great potential applications in animal genetic breeding. This study aims to characterize the GHRb cDNA of the striped catfish and analyze the distribution of its mRNA. Screening of single nucleotide polymorphisms’ (SNPs) loci and diplotypes was performed to provide basic information for the assisted selection of molecular markers in genetic breeding. The results showed that the GHRb cDNA of striped catfish had 2791 bp, which encoded for 569 amino acids. In a phylogenyic study, the ghrb of the striped catfish was clustered with those of other catfish and they were highly homologous. Quantitative real-time PCR (qRT-PCR) experiments showed that GHRb mRNA was expressed in ten different organs of the striped catfish, with the highest expression level in the liver. Five SNP and a haplotype block were identified in the 3′UTR of the GHRb gene using the direct sequencing of 307 individuals. Three haplotypes were found and four diplotypes were constructed. The association analysis revealed that these polymorphisms were significantly associated with growth traits in the striped catfish (p < 0.05). These polymorphisms will provide a valuable reference for future molecular genetic marker-assisted breeding of striped catfish. Full article

The effects of ultrafine bubbles on the high stock density of striped catfish larvae in a recirculating aquaculture system (RAS) are described in this research (UFBs-RAS). In this study, the various stock densities of striped catfish were investigated regarding the effect of oxygen saturation on the yolk sac absorption rate, length growth rate, and yolk sac utilization efficiency at the endogenous stage. The survival rate, the specific growth rate (weight, length, and biomass), and the gross feeding efficiency were examined at an exogenous stage. The results showed that the ultrafine bubbles generator in the recirculating aquaculture system (UFBs-RAS) provide the dissolved oxygen concentration up to 128.97%sat. The oxygen saturated state in FBs-RAS at the stock density 100 fish/L (D100) provided high yolk sac utilization efficiency in the endogenous stage and high survival, specific growth rate, and gross feeding efficiency in the exogenous stage. It was emphasized that the performance was possible due to surplus oxygen up to 1.58 mg/L at the stock density of 100 fish/L and accomplished minimum ammonia (NH₃-N) content much lower than the limit (0.12 µg/L). Thus, the striped catfish larviculture with UFBs-RAS-provided oxygen balance subsequently improved the production rate significantly with cost-effective production. Full article

The DNA analysis is the best approach to authenticate species in seafood products and to unveil frauds based on species substitution. In this study, a molecular strategy coupling Cytochrome Oxidase I (COI) DNA barcoding with the consolidated methodology of Restriction Fragment Length Polymorphisms (RFLPs), named COIBar-RFLP, was applied for searching pattern of restriction enzyme digestion, useful to discriminate seven different fish species (juveniles of Engraulis encrasicolus and Sardina pilchardus sold in Italy as “bianchetto” and Aphia minuta sold as “rossetto”; icefish Neosalanx tangkahkeii; European perch, Perca fluviatilis and the Nile Perch, Lates niloticus; striped catfish, Pangasianodon hypophthalmus). A total of 30 fresh and frozen samples were processed for DNA barcoding, analyzed against a barcode library of COI sequences retrieved from GenBank, and validated for COIBar–RFLP analysis. Cases of misdescription were detected: 3 samples labeled as “bianchetto” were substituted by N. tangkahkeii (2 samples) and A. minuta (1 sample); 3 samples labeled as “persico reale” (P. fluviatilis) were substituted by L. niloticus and P. hypophthalmus. All species were simultaneously discriminated through the restriction pattern obtained with MspI enzyme. The results highlighted that the COIBar-RFLP could be an effective tool to authenticate fish in seafood products by responding to the emerging interest in molecular identification technologies. Full article

The HiFi sequencing technology yields highly accurate long-read data with accuracies greater than 99.9% that can be used to improve results for complex applications such as genome assembly. Our study presents a high-quality chromosome-scale genome assembly of striped catfish (Pangasianodon hypophthalmus), a commercially important species cultured mainly in Vietnam, integrating HiFi reads and Hi-C data. A 788.4 Mb genome containing 381 scaffolds with an N50 length of 21.8 Mb has been obtained from HiFi reads. These scaffolds have been further ordered and clustered into 30 chromosome groups, ranging from 1.4 to 57.6 Mb, based on Hi-C data. The present updated assembly has a contig N50 of 14.7 Mb, representing a 245-fold and 4.2-fold improvement over the previous Illumina and Illumina-Nanopore-Hi-C based version, respectively. In addition, the proportion of repeat elements and BUSCO genes identified in our genome is remarkably higher than in the two previously released striped catfish genomes. These results highlight the power of using HiFi reads to assemble the highly repetitive regions and to improve the quality of genome assembly. The updated, high-quality genome assembled in this work will provide a valuable genomic resource for future population genetics, conservation biology and selective breeding studies of striped catfish. Full article

This study determined vitamin D content in commonly consumed fish in Thailand and the effects of different cooking methods on vitamin D retention. Five species of freshwater fish and four species of marine fish were purchased from three representative markets. All of the fish were individually prepared according to common household practices. Vitamin D2 and D3 were determined using the HPLC standard method (AOAC method 995.05). The results indicated that vitamin D3 was the only detectable form of vitamin D in the fish. Vitamin D content of raw freshwater fish ranged from 2.42 to 48.5 µg per 100 g edible portion (EP), which was higher than that of raw marine fish (2.94 to 4.69 µg per 100 g EP). Common silver barb, Red Nile tilapia, and Nile tilapia (freshwater fish living in the limnetic zone) contained high levels of vitamin D (48.5 ± 26.5, 31.0 ± 7.7, and 19.8 ± 3.5 µg per 100 g EP, respectively). Boiled fish (except for Common silver barb), fried fish (except for Striped snakehead, Walking catfish, and Common silver barb), and grilled fish (except for Common silver barb, Giant sea perch, and Short-bodied mackerel) retained high levels of vitamin D, which were not significantly different (p > 0.05) from raw fish. Common silver barb, Red Nile tilapia, and Nile tilapia—cooked by boiling, frying, and grilling—are recommended for consumption as excellent sources of vitamin D. Full article