Search Results (505)

Fiber-reinforced resin matrix composites are generally composed of fibers and matrix with significantly different properties, which are non-uniform and anisotropic in nature. Macro-failure criteria generally view composite plies as a uniform whole and do not accurately reflect fiber- and matrix-scale failures. In this study, the interface phase effect between fiber and matrix has been introduced into the frame of trans-scale analysis to better model the failure process, and the equivalent mechanical property characterization model of the interface phase has also been established. Combined with the macro–micro-strain transfer method, the trans-scale correlation of the mechanical response of the composite laminates between the macro scale and the fiber, matrix and interface micro scale has been achieved. Based on the micro-scale failure criterion and the stiffness reduction strategy, the trans-scale failure analysis method of composite materials incorporating the interface phase effect has been developed, which can simultaneously predict the failure modes of the matrix, fiber and interface phase. A numerical implementation of the developed trans-scale failure analysis method considering interface phase was carried out using the Python and Abaqus 2020 joint simulation technique. Case studies were carried out for three material systems, and the prediction data of the developed trans-scale failure analysis methodology incorporating interface phase effects for composite materials, the prediction data of the Linde failure criterion and the experimental data were compared. The comparison with experimental data confirms that this method has good prediction accuracy, and compared with the Linde and Hashin failure methods, only it can predict the failure mode of the fiber–matrix interface. The case analysis shows that its prediction accuracy has been improved by about 2–3%. Full article

This study presents a numerical and experimental evaluation of axial load transfer mechanisms in deep foundations constructed in stratified cohesive soils in İzmir, Türkiye. A full-scale bi-directional static load test equipped with strain gauges was conducted on a barrette pile to investigate depth-dependent mobilization of shaft resistance. A finite element model was developed and calibrated using field-observed load–settlement and strain data to replicate the pile–soil interaction and deformation behavior. The analysis revealed a shaft-dominated load transfer behavior, with progressive mobilization concentrated in intermediate-depth cohesive layers. Sensitivity analysis identified the undrained stiffness (E_u) as the most influential parameter governing pile settlement. A strong polynomial correlation was established between calibrated E_u values and SPT N₆₀, offering a practical tool for preliminary design. Additionally, strain energy distribution was evaluated as a supplementary metric, enhancing the interpretation of mobilization zones beyond conventional stress-based methods. The integrated approach provides valuable insights for performance-based foundation design in layered cohesive ground, supporting the development of site-calibrated numerical models informed by full-scale testing data. Full article

Vibrio parahaemolyticus is a major foodborne pathogen worldwide, responsible for seafood-associated poisoning. Among its toxin genes, tdh2 is the most critical. To investigate the role of tdh2 in V. parahaemolyticus under gastrointestinal conditions, we constructed tdh2 deletion and complementation strains and compared their survival under acid (pH 3 and 4) and bile stress (2%). The results showed that tdh2 expression was significantly upregulated under cold (4 °C) and bile stress (0.9%). Survival assays and PI staining revealed that the tdh2 mutant strain (VP: △tdh2) was more sensitive to acid and bile stress than the wild-type (WT), and this sensitivity was rescued by tdh2 complementation. These findings suggest that tdh2 plays a protective role in enhancing V. parahaemolyticus tolerance to acid and bile stress. In the VP: △tdh2 strain, seven genes were significantly upregulated and six were downregulated as a result of tdh2 deletion. These genes included VPA1332 (vtrA), VPA1348 (vtrB), VP2467 (ompU), VP0301 and VP1995 (ABC transporters), VP0527 (nhaR), and VP2553 (rpoS), among others. Additionally, LC-MS/MS analysis identified 12 differential metabolites between the WT and VP: △tdh2 strains, including phosphatidylserine (PS) (17:2 (9Z,12Z) /0:0 and 20:1 (11Z) /0:0), phosphatidylglycerol (PG) (17:0/0:0), flavin mononucleotide (FMN), and various nucleotides. The protective mechanism of tdh2 may involve preserving cell membrane permeability through regulation of ompU and ABC transporters and enhancing electron transfer efficiency via regulation of nhaR. The resulting reduction in ATP, DNA, and RNA synthesis—along with changes in membrane permeability and electron transfer due to decreased FMN—likely contributed to the reduced survival of the VP: △tdh2 strain. Meanwhile, the cells actively synthesized phospholipids to repair membrane damage, leading to increased levels of PS and PG. This study provides important insights into strategies for preventing and controlling food poisoning caused by tdh⁺ V. parahaemolyticus. Full article

Fiber Bragg grating (FBG) exhibits strong resistance to electromagnetic interference and excellent linear strain response, making it highly promising for structural health monitoring (SHM) in pavement. This research investigates the strain transfer characteristics of embedded FBG in pavement structure and materials by using the relevant theoretical models. Results indicate adhesive layer thickness and sheath modulus are the primary factors influencing the strain transfer coefficient. A thinner adhesive layer and high modulus of sheath enhance the coefficient. Additionally, the strain distribution of sheath significantly affects the transfer efficiency. When the stress level near the grating region is lower than the both ends, the coefficient increases and even exceeds 1, which typically occurs under multi-axle conditions. As for asphalt mixture, high temperature leads to lower efficiency, while accumulated plastic strain improves it. Although the increased load frequency results a higher strain transfer coefficient, the magnitude of this change is negligible. By employing polynomial fitting to the sheath strain distribution, the boundary condition of theoretical equation could be removed. The theoretical and numerical results of strain transfer coefficient for pavement embedded FBG demonstrate good consistency, indicating the polynomial fitting is adoptable for the theoretical calculation with non-uniform strain distribution. This study utilizes the FEM to clarify the evolution of FBG strain transfer in pavement structures and materials, providing a theoretical basis for the design and implementation of embedded FBG in pavement. Full article

Background: Chryseobacterium indologenes, an environmental bacterium, is increasingly recognized as an emerging nosocomial pathogen, particularly in Asia, and is often characterized by multidrug resistance. Objectives: This study aimed to investigate the genomic features of clinical C. indologenes isolates from Maharaj Nakorn Chiang Mai Hospital, Thailand, to understand their mechanisms of multidrug resistance, virulence factors, and mobile genetic elements (MGEs). Methods: Twelve C. indologenes isolates were identified, and their antibiotic susceptibility profiles were determined. Whole genome sequencing (WGS) was performed using a hybrid approach combining Illumina short-reads and Oxford Nanopore long-reads to generate complete bacterial genomes. The hybrid assembled genomes were subsequently analyzed to detect antimicrobial resistance (AMR) genes, virulence factors, and MGEs. Results: C. indologenes isolates were primarily recovered from urine samples of hospitalized elderly male patients with underlying conditions. These isolates generally exhibited extensive drug resistance, which was subsequently explored and correlated with genomic determinants. With one exception, CMCI13 showed a lower resistance profile (Multidrug resistance, MDR). Genomic analysis revealed isolates with genome sizes of 4.83–5.00 Mb and GC content of 37.15–37.35%. Genomic characterization identified conserved resistance genes (bla_IND-2, bla_CIA-4, adeF, vanT, and qacG) and various virulence factors. Phylogenetic and pangenome analysis showed 11 isolates clustering closely with Chinese strain 3125, while one isolate (CMCI13) formed a distinct branch. Importantly, each isolate, except CMCI13, harbored a large genomic island (approximately 94–100 kb) carrying significant resistance genes (bla_OXA-347, tetX, aadS, and ermF). The absence of this genomic island in CMCI13 correlated with its less resistant phenotype. No plasmids, integrons, or CRISPR-Cas systems were detected in any isolate. Conclusions: This study highlights the alarming emergence of multidrug-resistant C. indologenes in a hospital setting in Thailand. The genomic insights into specific resistance mechanisms, virulence factors, and potential horizontal gene transfer (HGT) events, particularly the association of a large genomic island with the XDR phenotype, underscore the critical need for continuous genomic surveillance to monitor transmission patterns and develop effective treatment strategies for this emerging pathogen. Full article

Background/Objectives: Lactiplantibacillus plantarum is widely utilized in the fermentation industry and offers potential health benefits. However, large-scale comparative genomic analyses aimed at exploring its metabolic functions and conducting safety assessments are still lacking. Methods: In this study, we performed a comparative genomic analysis of 324 L. plantarum strains sourced from various origins and geographical locations. Results: The results revealed that L. plantarum possesses a total of 2403 core genes, of which 12.3% have an unknown function. The phylogenetic analysis revealed a mixed distribution from various origins, suggesting complex transmission pathways. The metabolic analysis demonstrated that L. plantarum strains can produce several beneficial metabolites, including lysine, acetate, and riboflavin. Furthermore, L. plantarum is highly capable of degrading various carbohydrates and proteins, increasing its adaptability. Further, we profiled the antimicrobial peptides (AMPs) in the genomes of L. plantarum. We identified a widely distributed AMP and its variants, presenting in a total of 280 genomes. In our biosafety assessment of L. plantarum, we identified several antibiotic resistance genes, such as Tet(M), ANT(6)-Ia, and mdeA, which may have potential for horizontal gene transfer within the Lactobacillaceae family. Conclusions: This study provides genomic insights into the genetic diversity, metabolic functions, antimicrobial properties, and biosafety of L. plantarum, underscoring its potential applications in biotechnology and environmental adaptation. Full article

This study introduces and validates a comparative experiment-based method for determining the effective thickness of composite glass, including polymeric laminated glass (with polyvinyl butyral (PVB) and SentryGlas^® (SGP) interlayers) and vacuum glazing. This method employs comparative four-point bending tests, defining effective thickness by equating the bending stress of a composite specimen to that of a reference monolithic glass specimen under identical loading and boundary conditions. Specimens with varying configurations (glass thicknesses of 5 mm, 6 mm and 8 mm) were tested using non-destructive four-point bending tests under a multi-stage loading protocol (100 N–1000 N). Strain rosettes measured maximum strains at each loading stage to calculate bending stress. Analysis of the bending stress state revealed that vacuum glazing and SGP laminated glass exhibit superior load-bearing capacity compared to PVB laminated glass. The proposed method successfully determined the effective thickness for both laminated glass and vacuum glazing. Furthermore, results demonstrate that employing a 12 mm monolithic reference glass provides the highest accuracy for effective thickness determination. Theoretical bending stress calculations using the effective thickness derived from the 12 mm reference glass showed less than 10% deviation from experimental values. Conversely, compared to established standards and empirical formulas, the proposed method offers superior accuracy, particularly for vacuum glazing. Additionally, the mechanical properties of the viscoelastic interlayers (PVB and SGP) were investigated through static tensile tests and dynamic thermomechanical analysis (DMA). Distinct tensile behaviors and differing time-dependent shear transfer capacities between the two interlayer materials are found out. Key factors influencing the reliability of the method are also discussed and analyzed. This study provides a universally practical and applicable solution for accurate and effective thickness estimation in composite glass design. Full article

Lateritic soils in tropical regions feature cohesive textures and high specific resistance, driving up energy demands for tillage and harvesting machinery. However, current equipment designs lack discrete element models that account for soil moisture variations, and the microscopic effects of water content on lateritic soil deformation remain poorly understood. This study aims to calibrate and validate discrete element method (DEM) models of lateritic soil at varying moisture contents of 20.51%, 22.39%, 24.53%, 26.28%, and 28.04% by integrating the Hertz–Mindlin contact mechanics with bonding and JKR cohesion models. Key parameters in the simulations were calibrated through systematic experimentation. Using Plackett–Burman design, critical factors significantly affecting axial compressive force—including surface energy, normal bond stiffness, and tangential bond stiffness—were identified. Subsequently, Box–Behnken response surface methodology was employed to optimize these parameters by minimizing deviations between simulated and experimental maximum axial compressive forces under each moisture condition. The calibrated models demonstrated high fidelity, with average relative errors of 4.53%, 3.36%, 3.05%, 3.32%, and 7.60% for uniaxial compression simulations across the five moisture levels. Stress–strain analysis under axial loading revealed that at a given surface displacement, both fracture dimensions and stress transfer rates decreased progressively with increasing moisture content. These findings elucidate the moisture-dependent micromechanical behavior of lateritic soil and provide critical data support for DEM-based design optimization of soil-engaging agricultural implements in tropical environments. Full article

Stropharia rugosoannulata, an ecologically valuable and economically important edible mushroom, faces challenges in strain-level identification and breeding due to limited genomic resources and the lack of high-resolution molecular markers. In this study, we generated high-quality genomic data for 105 S. rugosoannulata strains and identified over 2.7 million SNPs, unveiling substantial genetic diversity within the species. Using core gene-associated multiple nucleotide polymorphism (cgMNP) markers, we developed an efficient and transferable framework for strain discrimination. The analysis revealed pronounced genetic differentiation among cultivars, clustering them into two distinct phylogenetic groups. Nucleotide diversity (π) across 83 core genes varied significantly, highlighting both highly conserved loci under purifying selection and highly variable loci potentially associated with adaptive evolution. Phylogenetic analysis of the most variable gene, Phosphatidate cytidylyltransferase mitochondrial, identified 865 SNPs, enabling precise differentiation of all 85 cultivars. Our findings underscore the utility of cgMNP markers in addressing challenges posed by horizontal gene transfer and phylogenetic noise, demonstrating their robustness in cross-species applications. By providing insights into genetic diversity, evolutionary dynamics, and marker utility, this study establishes a foundation for advancing breeding programs, conservation strategies, and functional genomics in S. rugosoannulata. Furthermore, the adaptability of cgMNP markers offers a universal tool for high-resolution strain identification across diverse fungal taxa, contributing to broader fungal phylogenomics and applied mycology. Full article

Ductile structures have demonstrated the ability to withstand increased seismic intensity levels. Additionally, these structures can be restored to their operational state promptly following the replacement of damaged components post-earthquake. This capability has been a subject of considerable interest and focus in recent years. The study presented in this paper introduces an innovative beam-column connection that incorporates V-shaped steel as the replaceable energy-dissipating component. It delineates the structural configuration and design principles of this joint. Furthermore, the paper conducts a detailed analysis of the joint’s failure mode, stress distribution, and strain patterns using ABAQUS 2022 finite element software, thereby elucidating the failure mechanisms, load transfer pathways, and energy dissipation characteristics of the joint. In addition, the study investigates the impact of critical design parameters, including the strength, thickness, and weakening dimensions of the dog-bone energy-dissipating section, as well as the strength and thickness of the V-shaped plate, on the seismic behavior of the beam-column joint. The outcomes demonstrate that the incorporation of V-shaped steel with a configurable replaceable energy-dissipating component into the traditional dog-bone replaceable joint significantly improves the out-of-plane stability. Concurrently, the V-shaped steel undergoes a process of gradual flattening under load, which allows for a larger degree of deformation. In conclusion, the innovative joint design exhibits superior ductility and load-bearing capacity when contrasted with the conventional replaceable dog-bone energy-dissipating section joint. The joint’s equivalent viscous damping coefficient, ranging between 0.252 and 0.331, demonstrates its robust energy dissipation properties. The parametric analysis results indicate that the LY160 and Q235 steel grades are recommended for the dog-bone connector and V-shaped steel connector, respectively. The optimal thickness ranges are 6–10 mm for the dog-bone connector and 2–4 mm for the V-shaped steel connector, while the weakened dimension should preferably be selected within 15–20 mm. Full article

Soybean (Glycine max) is a protein-rich legume crop that plays an important role in achieving food security. The aim of this study was to isolate soybean-nodulating rhizobia from Côte d’Ivoire soils and evaluate their potential as efficient strains in order to develop local bioinoculants. For this objective, 38 composite soil samples were collected from Côte d’Ivoire’s five major climatic zones. These soils were used as substrate to trap the nodulating rhizobia using the promiscuous soybean variety R2-231. A total of 110 bacterial strains were isolated and subsequently identified. The analysis of ITS (rDNA16S-23S), glnII and recA sequences revealed a relatively low genetic diversity of these native rhizobia. Moreover, the ITS phylogeny showed that these were scattered into two Bradyrhizobium clades dominated by the B. elkanii supergroup, with ca. 75% of all isolates. Concatenated glnII-recA sequence phylogeny confirmed that the isolates belong in the majority to ‘B. brasilense’, together with B. vignae and some putative genospecies of Bradyrhizobium that needs further elucidation. The core gene phylogeny was found to be incongruent with nodC and nifH phylogenies, probably due to lateral gene transfer influence on the symbiotic genes. The diversity and composition of the Bradyrhizobium species varied significantly among different sampling sites, and the key explanatory variables identified were carbon (C), magnesium (Mg), nitrogen (N), pH, and annual precipitation. Based on both shoot biomass and leaf relative chlorophyll content, three isolates consistently showed a higher symbiotic effectiveness than the exotic inoculant strain Bradyrhizobium IRAT-FA3, demonstrating their potential to serve as indigenous elite strains as bioinoculants. Full article

Grazing is a free-range farming model commonly practiced in low-external-input agricultural systems. The widespread use of veterinary antibiotics in livestock farming has led to significant environmental accumulation of antibiotic residues and antibiotic resistance genes (ARGs), posing global health risks. This study investigated the antibiotic residues, bacterial community, ARG profiles, and mobile genetic elements (MGEs) in cattle feces from three provinces in western China (Ningxia, Xinjiang, and Inner Mongolia) under grazing modes. The HPLC-MS detection showed that the concentration of tetracycline antibiotics was the highest in all three provinces. Correlation analysis revealed a significant negative correlation between antibiotic residues and the diversity and population abundance of intestinal microbiota. However, the abundance of ARGs was directly proportional to antibiotic residues. Then, the Sankey analysis revealed that the ARGs in the cattle fecal samples were concentrated in 15 human pathogenic bacteria (HPB) species, with 9 of these species harboring multiple drug resistance genes. Metagenomic sequencing revealed that carbapenemase-resistant genes (bla_KPC and bla_VIM) were also present in considerable abundance, accounting for about 10% of the total ARGs detected in three provinces. Notably, Klebsiella pneumoniae strains carrying bla_CTX-M-55 were detected, which had a possibility of IncFII plasmids harboring transposons and IS19, indicating the risk of horizontal transfer of ARGs. This study significantly advances the understanding of the impact of antibiotic residues on the fecal microbiota composition and ARG profiles in grazing cattle from northwestern China. Furthermore, it provides critical insights for the development of rational antibiotic usage strategies and comprehensive public health risk assessments. Full article

Acinetobacter baumannii is listed by the World Health Organization as an emerging bacterial priority pathogen, the prevalence and multidrug resistance of which have been increasing. This functional genomics study aimed to understand the drug-resistance mechanisms of an extensively drug-resistant (XDR) A. baumannii strain (IRMCBCU95U) isolated from a transtracheal aspirate sample from a female patient with end-stage renal disease in Saudi Arabia. The whole genome of IRMCBCU95U (4.3 Mbp) was sequenced using Oxford Nanopore long-read sequencing to identify and compare the antibiotic-resistance profile and genomic features of A. baumannii IRMCBCU95U. The antibiogram of A. baumannii IRMCBCU95U revealed resistance to multiple antibiotics, including cefepime, ceftazidime, ciprofloxacin, imipenem, meropenem and piperacillin/tazobactam. A comparative genomic analysis between IRMCBCU95U and A. baumannii K09-14 and ATCC 19606 identified significant genetic heterogeneity and mosaicism among the strains. This analysis also demonstrated the hybrid nature of the genome of IRMCBCU95U and indicates that horizontal gene transfer may have occurred between these strains. The IRMCBCU95U genome has a diverse range of genes associated with antimicrobial resistance and mobile genetic elements (ISAba1 and IS26) associated with the spread of multidrug resistance. The presence of virulence-associated genes that are linked to iron acquisition, motility and transcriptional regulation confirmed that IRMCBCU95U is a priority human pathogen. The plasmid fragment IncFIB(pNDM-Mar) observed in the strain is homologous to the plasmid in Klebsiella pneumoniae (439 bp; similarity: 99.09%), which supports its antimicrobial resistance. From these observations, it can be concluded that the clinical A. baumannii IRMCBCU95U isolate is an emerging extensively drug-resistant human pathogen with a novel combination of resistance genes and a plasmid fragment. The complex resistome of IRMCBCU95U highlights the urgent need for genomic surveillance in hospital settings in Saudi Arabia to fight against the spread of extensively drug-resistant A. baumannii. Full article

Understanding the relationship between deformation behavior and mechanisms at elevated temperatures is of great significance for applications of high-temperature titanium alloys. This study systematically investigates the plastic deformation behavior of Ti65 alloy under both room-temperature and high-temperature conditions through in situ tensile testing, combined with slip trace analysis, crystal orientation analysis, and geometrical compatibility factor evaluation. TEM observations and molecular dynamics simulations reveal that plastic deformation is predominantly accommodated by basal and prismatic slip systems with minimal pyramidal slip contribution at room temperature. However, elevated temperatures significantly promote pyramidal <a> and <c+a> slip due to thermal activation. This transition stems from a shift in deformation mechanisms: while room-temperature deformation relies on multi-slip and grain rotation to accommodate strain, high-temperature deformation is governed by efficient slip transfer across grain boundaries enabled by enhanced geometrical compatibility. Consistent with this, thermal activation at elevated temperatures reduces the critical resolved shear stress (CRSS), preferentially activating 1/3<11–23> dislocations and thereby substantially improving plastic deformation capability. These findings provide critical insights into the temperature-dependent deformation mechanisms of Ti65 alloy, offering valuable guidance for performance optimization in high-temperature applications. Full article

Oral diseases such as periodontitis and dental caries, as well as conditions related to oral health such as halitosis, are closely associated with dysbiosis of the oral microbiota and continue to pose significant public health challenges worldwide. With the increasing resistance to existing antibiotics and side effects of chemical disinfectants, probiotics have emerged as promising alternatives for oral healthcare. This study aimed to evaluate the oral health efficacy and probiotic properties of Limosilactobacillus fermentum (L. fermentum) MG4717 isolated from the human oral cavity. L. fermentum MG4717 showed notable antimicrobial activity against the key oral pathogens Streptococcus mutans (S. mutans), Aggregatibacter actinomycetemcomitans (A. actinomycetemcomitans), Porphyromonas gingivalis (P. gingivalis), and Fusobacterium nucleatum (F. nucleatum) and effectively inhibited biofilm formation. Additionally, L. fermentum MG4717 significantly downregulated methionine gamma-lyase (mgl) mRNA expression in P. gingivalis, which is implicated in halitosis and pathogenicity. L. fermentum MG4717 strongly adhered to the KB and HT-29 epithelial cells and exhibited good resilience under simulated gastrointestinal conditions. Whole-genome sequencing (WGS) and average nucleotide identity (ANI) analysis confirmed strain identity (98.73% average nucleotide identity with L. fermentum DSM20052) and the absence of transferable antibiotic resistance genes. Safety assessments revealed no cytotoxicity, hemolytic activity, or bile salt hydrolase activity. These findings suggest that L. fermentum MG4717 has the potential to be used as a safe and effective oral probiotic beneficial for oral health. Full article