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Keywords = stochastic reaction model

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28 pages, 2027 KB  
Article
Dynamic Resource Games in the Wood Flooring Industry: A Bayesian Learning and Lyapunov Control Framework
by Yuli Wang and Athanasios V. Vasilakos
Algorithms 2026, 19(1), 78; https://doi.org/10.3390/a19010078 - 16 Jan 2026
Viewed by 89
Abstract
Wood flooring manufacturers face complex challenges in dynamically allocating resources across multi-channel markets, characterized by channel conflicts, demand uncertainty, and long-term cumulative effects of decisions. Traditional static optimization or myopic approaches struggle to address these intertwined factors, particularly when critical market states like [...] Read more.
Wood flooring manufacturers face complex challenges in dynamically allocating resources across multi-channel markets, characterized by channel conflicts, demand uncertainty, and long-term cumulative effects of decisions. Traditional static optimization or myopic approaches struggle to address these intertwined factors, particularly when critical market states like brand reputation and customer base cannot be precisely observed. This paper establishes a systematic and theoretically grounded online decision framework to tackle this problem. We first model the problem as a Partially Observable Stochastic Dynamic Game. The core innovation lies in introducing an unobservable market position vector as the central system state, whose evolution is jointly influenced by firm investments, inter-channel competition, and macroeconomic randomness. The model further captures production lead times, physical inventory dynamics, and saturation/cross-channel effects of marketing investments, constructing a high-fidelity dynamic system. To solve this complex model, we propose a hierarchical online learning and control algorithm named L-BAP (Lyapunov-based Bayesian Approximate Planning), which innovatively integrates three core modules. It employs particle filters for Bayesian inference to nonparametrically estimate latent market states online. Simultaneously, the algorithm constructs a Lyapunov optimization framework that transforms long-term discounted reward objectives into tractable single-period optimization problems through virtual debt queues, while ensuring stability of physical systems like inventory. Finally, the algorithm embeds a game-theoretic module to predict and respond to rational strategic reactions from each channel. We provide theoretical performance analysis, rigorously proving the mean-square boundedness of system queues and deriving the performance gap between long-term rewards and optimal policies under complete information. This bound clearly quantifies the trade-off between estimation accuracy (determined by particle count) and optimization parameters. Extensive simulations demonstrate that our L-BAP algorithm significantly outperforms several strong baselines—including myopic learning and decentralized reinforcement learning methods—across multiple dimensions: long-term profitability, inventory risk control, and customer service levels. Full article
(This article belongs to the Section Analysis of Algorithms and Complexity Theory)
25 pages, 1857 KB  
Article
Exponentially Clustered Synchronization of a Stochastic Complex Network with Reaction–Diffusion Terms and Time Delays via a Pinning Boundary Control
by Binglong Lu and Mei Liu
Mathematics 2026, 14(2), 309; https://doi.org/10.3390/math14020309 - 15 Jan 2026
Viewed by 82
Abstract
A pinning boundary control strategy that can achieve the exponentially clustered synchronization of a specific class of complex networks is developed. Firstly, the studied model captures the essential features of networks, including spatial dependence, stochastic switching, noise perturbation, and time delays. Secondly, the [...] Read more.
A pinning boundary control strategy that can achieve the exponentially clustered synchronization of a specific class of complex networks is developed. Firstly, the studied model captures the essential features of networks, including spatial dependence, stochastic switching, noise perturbation, and time delays. Secondly, the proposed control algorithm can save the implementation cost and overcome environmental constraint by acting on the boundary of a few nodes. Thirdly, an average state related to the directed topology of the nodes in the same cluster is calculated as the target network. Finally, nonlinear simulations show that the proposed controller can solve the cluster synchronization of a directed coupled reaction–diffusion neural network with Markovian switching, stochastic noise and time delay. Full article
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23 pages, 3323 KB  
Article
Do Geopolitical Shocks Drive Currency Volatility? New Evidence from a TVP-VAR Framework
by Ikram Ghamgui Frikha
J. Risk Financial Manag. 2026, 19(1), 18; https://doi.org/10.3390/jrfm19010018 - 25 Dec 2025
Viewed by 872
Abstract
Exchange rate dynamics in OECD economies have been increasingly shaped by geopolitical tensions and systemic crises. Between 2010 and 2025, a sequence of major events including the European sovereign debt crisis, the COVID-19 pandemic, and the Russia–Ukraine conflict has amplified uncertainty and volatility [...] Read more.
Exchange rate dynamics in OECD economies have been increasingly shaped by geopolitical tensions and systemic crises. Between 2010 and 2025, a sequence of major events including the European sovereign debt crisis, the COVID-19 pandemic, and the Russia–Ukraine conflict has amplified uncertainty and volatility in global financial markets. Using a Bayesian Time-Varying Parameter Vector Autoregression (TVP-VAR) model, this analysis investigates how geopolitical shocks are transmitted to exchange rate movements against the US dollar, capturing structural breaks, stochastic volatility, and heterogeneous time-varying relationships across countries. The empirical evidence reveals that exchange rates respond significantly but asymmetrically to geopolitical shocks, with more pronounced effects during periods of global turmoil and weaker reactions in stable phases. Furthermore, the sensitivity of exchange rates to geopolitical risk differs across economies, depending on institutional quality, trade exposure, and macroeconomic resilience. These findings highlight important asymmetries in the transmission of geopolitical uncertainty and underscore the heterogeneity of policy responses among advanced economies. From a practical perspective, the results provide valuable guidance for policymakers and international investors seeking to integrate geopolitical risk into monetary, fiscal, and risk management frameworks. Full article
(This article belongs to the Section Applied Economics and Finance)
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19 pages, 3388 KB  
Article
Nonlinear Stochastic Adaptive Control of PEMFC Temperature Management System
by Yucheng Feng, Yong Wan and Quan Ouyang
Mathematics 2025, 13(22), 3588; https://doi.org/10.3390/math13223588 - 8 Nov 2025
Viewed by 352
Abstract
To address the problem of the proton exchange membrane fuel cell (PEMFC) temperature management under stochastic disturbances, this paper integrates a PEMFC thermal model with a water pump model and establishes a nonlinear stochastic model for temperature regulation. The objective is to maintain [...] Read more.
To address the problem of the proton exchange membrane fuel cell (PEMFC) temperature management under stochastic disturbances, this paper integrates a PEMFC thermal model with a water pump model and establishes a nonlinear stochastic model for temperature regulation. The objective is to maintain the stack temperature at its optimal value. Due to the inherent complexity of the PEMFC electrochemical reactions, the thermal dynamics exhibit strong nonlinear characteristics. To tackle this issue, a control strategy based on the stochastic backstepping method is proposed. Furthermore, to cope with variations in membrane water content and ambient temperature during operation, we design stochastic estimator-based adaptive laws. Simulation results, considering both stochastic disturbances driven by tracking error and those driven by stack temperature and load current, indicate that the proposed control strategy effectively maintains the stack temperature at 343 K under various operating conditions, with a maximum deviation of 0.2 K, thereby confirming its effectiveness and robustness. Full article
(This article belongs to the Special Issue Advanced Filtering and Control Methods for Stochastic Systems)
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25 pages, 5257 KB  
Article
A Reduced Stochastic Data-Driven Approach to Modelling and Generating Vertical Ground Reaction Forces During Running
by Guillermo Fernández, José María García-Terán, Álvaro Iglesias-Pordomingo, César Peláez-Rodríguez, Antolin Lorenzana and Alvaro Magdaleno
Modelling 2025, 6(4), 144; https://doi.org/10.3390/modelling6040144 - 6 Nov 2025
Viewed by 498
Abstract
This work presents a time-domain approach for characterizing the Ground Reaction Forces (GRFs) exerted by a pedestrian during running. It is focused on the vertical component, but the methodology is adaptable to other components or activities. The approach is developed from a statistical [...] Read more.
This work presents a time-domain approach for characterizing the Ground Reaction Forces (GRFs) exerted by a pedestrian during running. It is focused on the vertical component, but the methodology is adaptable to other components or activities. The approach is developed from a statistical perspective. It relies on experimentally measured force-time series obtained from a healthy male pedestrian at eight step frequencies ranging from 130 to 200 steps/min. These data are subsequently used to build a stochastic data-driven model. The model is composed of multivariate normal distributions which represent the step patterns of each foot independently, capturing potential disparities between them. Additional univariate normal distributions represent the step scaling and the aerial phase, the latter with both feet off the ground. A dimensionality reduction procedure is also implemented to retain the essential geometric features of the steps using a sufficient set of random variables. This approach accounts for the intrinsic variability of running gait by assuming normality in the variables, validated through state-of-the-art statistical tests (Henze-Zirkler and Shapiro-Wilk) and the Box-Cox transformation. It enables the generation of virtual GRFs using pseudo-random numbers from the normal distributions. Results demonstrate strong agreement between virtual and experimental data. The virtual time signals reproduce the stochastic behavior, and their frequency content is also captured with deviations below 4.5%, most of them below 2%. This confirms that the method effectively models the inherent stochastic nature of running human gait. Full article
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37 pages, 4383 KB  
Article
The Spatial Regime Conversion Method
by Charles G. Cameron, Cameron A. Smith and Christian A. Yates
Mathematics 2025, 13(21), 3406; https://doi.org/10.3390/math13213406 - 26 Oct 2025
Viewed by 615
Abstract
We present the spatial regime conversion method (SRCM), a novel hybrid modelling framework for simulating reaction–diffusion systems that adaptively combines stochastic discrete and deterministic continuum representations. Extending the regime conversion method (RCM) to spatial settings, the SRCM employs a discrete reaction–diffusion master equation [...] Read more.
We present the spatial regime conversion method (SRCM), a novel hybrid modelling framework for simulating reaction–diffusion systems that adaptively combines stochastic discrete and deterministic continuum representations. Extending the regime conversion method (RCM) to spatial settings, the SRCM employs a discrete reaction–diffusion master equation (RDME) representation in regions of low concentration and continuum partial differential equations (PDEs) where concentrations are high, dynamically switching based on local thresholds. This is an advancement over the existing methods in the literature, requiring no fixed spatial interfaces, enabling efficient and accurate simulation of systems in which stochasticity plays a key role but is not required uniformly across the domain. We specify the full mathematical formulation of the SRCM, including conversion reactions, hybrid kinetic rules, and consistent numerical updates. The method is validated across several one-dimensional test systems, including simple diffusion from a region of high concentration, the formation of a morphogen gradient, and the propagation of FKPP travelling waves. The results show that the SRCM captures key stochastic features while offering substantial gains in computational efficiency over fully stochastic models. Full article
(This article belongs to the Special Issue Stochastic Models in Mathematical Biology, 2nd Edition)
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57 pages, 1386 KB  
Article
Bidirectional Endothelial Feedback Drives Turing-Vascular Patterning and Drug-Resistance Niches: A Hybrid PDE-Agent-Based Study
by Zonghao Liu, Louis Shuo Wang, Jiguang Yu, Jilin Zhang, Erica Martel and Shijia Li
Bioengineering 2025, 12(10), 1097; https://doi.org/10.3390/bioengineering12101097 - 12 Oct 2025
Cited by 2 | Viewed by 917
Abstract
We present a hybrid partial differential equation-agent-based model (PDE-ABM). In our framework, tumor cells secrete tumor angiogenic factor (TAF), while endothelial cells chemotactically migrate and branch in response. Reaction–diffusion PDEs for TAF, oxygen, and cytotoxic drug are coupled to discrete stochastic dynamics of [...] Read more.
We present a hybrid partial differential equation-agent-based model (PDE-ABM). In our framework, tumor cells secrete tumor angiogenic factor (TAF), while endothelial cells chemotactically migrate and branch in response. Reaction–diffusion PDEs for TAF, oxygen, and cytotoxic drug are coupled to discrete stochastic dynamics of tumor cells and endothelial tip cells, ensuring multiscale integration. Motivated by observed perfusion heterogeneity in tumors and its pharmacokinetic consequences, we conduct a linear stability analysis for a reduced endothelial–TAF reaction–diffusion subsystem and derive an explicit finite-domain threshold for Turing instability. We demonstrate that bidirectional coupling, where endothelial cells both chemotactically migrate along TAF gradients and secrete TAF, is necessary and sufficient to generate spatially periodic vascular clusters and inter-cluster hypoxic regions. These emergent patterns produce heterogeneous drug penetration and resistant niches. Our results identify TAF clearance, chemotactic sensitivity, and endothelial motility as effective levers to homogenize perfusion. The model is two-dimensional and employs simplified kinetics, and we outline necessary extensions to three dimensions and saturable kinetics required for quantitative calibration. The study links reaction–diffusion mechanisms with clinical principles and suggests actionable strategies to mitigate resistance by targeting endothelial–TAF feedback. Full article
(This article belongs to the Special Issue Applications of Partial Differential Equations in Bioengineering)
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27 pages, 3643 KB  
Article
The Allen–Cahn-Based Approach to Cross-Scale Modeling Bacterial Growth Controlled by Quorum Sensing
by Anna Maslovskaya, Yixuan Shuai and Christina Kuttler
Mathematics 2025, 13(18), 3013; https://doi.org/10.3390/math13183013 - 18 Sep 2025
Viewed by 1066
Abstract
This study, grounded in traveling wave theory, develops a cross-scale reaction-diffusion model to describe nutrient-dependent bacterial growth on agar surfaces and applies it to in silico investigations of microbial population dynamics. The approach is based on the coupling of a modified Allen–Cahn equation [...] Read more.
This study, grounded in traveling wave theory, develops a cross-scale reaction-diffusion model to describe nutrient-dependent bacterial growth on agar surfaces and applies it to in silico investigations of microbial population dynamics. The approach is based on the coupling of a modified Allen–Cahn equation with the formulation of quorum sensing signal dynamics, incorporating a nutrient-dependent regulatory threshold and stochastic diffusion. A closed-loop model of bacterial growth regulated by quorum sensing is developed through theoretical analysis, numerical simulations, and computational experiments.The model is implemented using Yanenko’s computational scheme, which incorporates corrective refinement via Heun’s method to account for nonlinear components. Numerical simulations are carried out in MATLAB, allowing for accurate computation of spatio-temporal patterns and facilitating the identification of key mechanisms governing the collective behavior of bacterial communities. Full article
(This article belongs to the Special Issue New Advances in Bioinformatics and Mathematical Modelling)
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48 pages, 934 KB  
Article
Analysis and Mean-Field Limit of a Hybrid PDE-ABM Modeling Angiogenesis-Regulated Resistance Evolution
by Louis Shuo Wang, Jiguang Yu, Shijia Li and Zonghao Liu
Mathematics 2025, 13(17), 2898; https://doi.org/10.3390/math13172898 - 8 Sep 2025
Cited by 1 | Viewed by 1108
Abstract
Mathematical modeling is indispensable in oncology for unraveling the interplay between tumor growth, vascular remodeling, and therapeutic resistance. We present a hybrid modeling framework (continuum-discrete) and present its hybrid mathematical formulation as a coupled partial differential equation–agent-based (PDE-ABM) system. It couples reaction–diffusion fields [...] Read more.
Mathematical modeling is indispensable in oncology for unraveling the interplay between tumor growth, vascular remodeling, and therapeutic resistance. We present a hybrid modeling framework (continuum-discrete) and present its hybrid mathematical formulation as a coupled partial differential equation–agent-based (PDE-ABM) system. It couples reaction–diffusion fields for oxygen, drug, and tumor angiogenic factor (TAF) with discrete vessel agents and stochastic phenotype transitions in tumor cells. Stochastic phenotype switching is handled with an exact Gillespie algorithm (a Monte Carlo method that simulates random phenotype flips and their timing), while moment-closure methods (techniques that approximate higher-order statistical moments to obtain a closed, tractable PDE description) are used to derive mean-field PDE limits that connect microscale randomness to macroscopic dynamics. We provide existence/uniqueness results for the coupled PDE-ABM system, perform numerical analysis of discretization schemes, and derive analytically tractable continuum limits. By linking stochastic microdynamics and deterministic macrodynamics, this hybrid mathematical formulation—i.e., the coupled PDE-ABM system—captures bidirectional feedback between hypoxia-driven angiogenesis and resistance evolution and provides a rigorous foundation for predictive, multiscale oncology models. Full article
(This article belongs to the Special Issue Applied Mathematical Modeling in Oncology)
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46 pages, 8337 KB  
Review
Numerical Modelling of Keratinocyte Behaviour: A Comprehensive Review of Biochemical and Mechanical Frameworks
by Sarjeel Rashid, Raman Maiti and Anish Roy
Cells 2025, 14(17), 1382; https://doi.org/10.3390/cells14171382 - 4 Sep 2025
Viewed by 2902
Abstract
Keratinocytes are the primary cells of the epidermis layer in our skin. They play a crucial role in maintaining skin health, responding to injuries, and counteracting disease progression. Understanding their behaviour is essential for advancing wound healing therapies, improving outcomes in regenerative medicine, [...] Read more.
Keratinocytes are the primary cells of the epidermis layer in our skin. They play a crucial role in maintaining skin health, responding to injuries, and counteracting disease progression. Understanding their behaviour is essential for advancing wound healing therapies, improving outcomes in regenerative medicine, and developing numerical models that accurately mimic skin deformation. To create physically representative models, it is essential to evaluate the nuanced ways in which keratinocytes deform, interact, and respond to mechanical and biochemical signals. This has prompted researchers to investigate various computational methods that capture these dynamics effectively. This review summarises the main mathematical and biomechanical modelling techniques (with particular focus on the literature published since 2010). It includes reaction–diffusion frameworks, finite element analysis, viscoelastic models, stochastic simulations, and agent-based approaches. We also highlight how machine learning is being integrated to accelerate model calibration, improve image-based analyses, and enhance predictive simulations. While these models have significantly improved our understanding of keratinocyte function, many approaches rely on idealised assumptions. These may be two-dimensional unicellular analysis, simplistic material properties, or uncoupled analyses between mechanical and biochemical factors. We discuss the need for multiscale, integrative modelling frameworks that bridge these computational and experimental approaches. A more holistic representation of keratinocyte behaviour could enhance the development of personalised therapies, improve disease modelling, and refine bioengineered skin substitutes for clinical applications. Full article
(This article belongs to the Section Cellular Biophysics)
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26 pages, 3350 KB  
Article
Nonlocal Modeling and Inverse Parameter Estimation of Time-Varying Vehicular Emissions in Urban Pollution Dynamics
by Muratkan Madiyarov, Nurlana Alimbekova, Aibek Bakishev, Gabit Mukhamediyev and Yerlan Yergaliyev
Mathematics 2025, 13(17), 2772; https://doi.org/10.3390/math13172772 - 28 Aug 2025
Viewed by 671
Abstract
This paper investigates the dispersion of atmospheric pollutants in urban environments using a fractional-order convection–diffusion-reaction model with dynamic line sources associated with vehicle traffic. The model includes Caputo fractional time derivatives and Riesz fractional space derivatives to account for memory effects and non-local [...] Read more.
This paper investigates the dispersion of atmospheric pollutants in urban environments using a fractional-order convection–diffusion-reaction model with dynamic line sources associated with vehicle traffic. The model includes Caputo fractional time derivatives and Riesz fractional space derivatives to account for memory effects and non-local transport phenomena characteristic of complex urban air flows. Vehicle trajectories are generated stochastically on the road network graph using Dijkstra’s algorithm, and each moving vehicle acts as a mobile line source of pollutant emissions. To reflect the daily variability of emissions, a time-dependent modulation function determined by unknown parameters is included in the source composition. These parameters are inferred by solving an inverse problem using synthetic concentration measurements from several fixed observation points throughout the area. The study presents two main contributions. Firstly, a detailed numerical analysis of how fractional derivatives affect pollutant dispersion under realistic time-varying mobile source conditions, and secondly, an evaluation of the performance of the proposed parameter estimation method for reconstructing time-varying emission rates. The results show that fractional-order models provide increased flexibility for representing anomalous transport and retention effects, and the proposed method allows for reliable recovery of emission dynamics from sparse measurements. Full article
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28 pages, 974 KB  
Review
Murburn Bioenergetics and “Origins–Sustenance–Termination–Evolution of Life”: Emergence of Intelligence from a Network of Molecules, Unbound Ions, Radicals and Radiations
by Laurent Jaeken and Kelath Murali Manoj
Int. J. Mol. Sci. 2025, 26(15), 7542; https://doi.org/10.3390/ijms26157542 - 5 Aug 2025
Viewed by 1538
Abstract
The paradigm-shift idea of murburn concept is no hypothesis but developed directly from fundamental facts of cellular/ecological existence. Murburn involves spontaneous and stochastic interactions (mediated by murzymes) amongst the molecules and unbound ions of cells. It leads to effective charge s [...] Read more.
The paradigm-shift idea of murburn concept is no hypothesis but developed directly from fundamental facts of cellular/ecological existence. Murburn involves spontaneous and stochastic interactions (mediated by murzymes) amongst the molecules and unbound ions of cells. It leads to effective charge separation (ECS) and formation/recruitment of diffusible reactive species (DRS, like radicals whose reactions enable ATP-synthesis and thermogenesis) and emission of radiations (UV/Vis to ELF). These processes also lead to a chemo-electromagnetic matrix (CEM), ascertaining that living cell/organism react/function as a coherent unit. Murburn concept propounds the true utility of oxygen: generating DRS (with catalytic and electrical properties) on the way to becoming water, the life solvent, and ultimately also leading to phase-based macroscopic homeostatic outcomes. Such a layout enables cells to become simple chemical engines (SCEs) with powering, coherence, homeostasis, electro-mechanical and sensing–response (PCHEMS; life’s short-term “intelligence”) abilities. In the current review, we discuss the coacervate nature of cells and dwell upon the ways and contexts in which various radiations (either incident or endogenously generated) could interact in the new scheme of cellular function. Presenting comparative evidence/arguments and listing of systems with murburn models, we argue that the new perceptions explain life processes better and urge the community to urgently adopt murburn bioenergetics and adapt to its views. Further, we touch upon some distinct scientific and sociological contexts with respect to the outreach of murburn concept. It is envisaged that greater awareness of murburn could enhance the longevity and quality of life and afford better approaches to therapies. Full article
(This article belongs to the Section Molecular Biophysics)
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20 pages, 992 KB  
Review
Markov-Chain Perturbation and Approximation Bounds in Stochastic Biochemical Kinetics
by Alexander Y. Mitrophanov
Mathematics 2025, 13(13), 2059; https://doi.org/10.3390/math13132059 - 21 Jun 2025
Cited by 1 | Viewed by 3136
Abstract
Markov chain perturbation theory is a rapidly developing subfield of the theory of stochastic processes. This review outlines emerging applications of this theory in the analysis of stochastic models of chemical reactions, with a particular focus on biochemistry and molecular biology. We begin [...] Read more.
Markov chain perturbation theory is a rapidly developing subfield of the theory of stochastic processes. This review outlines emerging applications of this theory in the analysis of stochastic models of chemical reactions, with a particular focus on biochemistry and molecular biology. We begin by discussing the general problem of approximate modeling in stochastic chemical kinetics. We then briefly review some essential mathematical results pertaining to perturbation bounds for continuous-time Markov chains, emphasizing the relationship between robustness under perturbations and the rate of exponential convergence to the stationary distribution. We illustrate the use of these results to analyze stochastic models of biochemical reactions by providing concrete examples. Particular attention is given to fundamental problems related to approximation accuracy in model reduction. These include the partial thermodynamic limit, the irreversible-reaction limit, parametric uncertainty analysis, and model reduction for linear reaction networks. We conclude by discussing generalizations and future developments of these methodologies, such as the need for time-inhomogeneous Markov models. Full article
(This article belongs to the Section D1: Probability and Statistics)
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23 pages, 3373 KB  
Article
Elucidating the Role of the Mixing Entropy in Equilibrated Nanoconfined Reactions
by Leonid Rubinovich and Micha Polak
Entropy 2025, 27(6), 564; https://doi.org/10.3390/e27060564 - 27 May 2025
Viewed by 635
Abstract
By introducing the concept of nanoreaction-based fluctuating mixing entropy, the challenge posed by the smallness of a closed molecular system is addressed through equilibrium statistical–mechanical averaging over fluctuating reaction extent. Based on the canonical partition function, the interplay between the mixing entropy and [...] Read more.
By introducing the concept of nanoreaction-based fluctuating mixing entropy, the challenge posed by the smallness of a closed molecular system is addressed through equilibrium statistical–mechanical averaging over fluctuating reaction extent. Based on the canonical partition function, the interplay between the mixing entropy and fluctuations in the reaction extent in nanoscale environments is unraveled while maintaining consistency with macroscopic behavior. The nanosystem size dependence of the mixing entropy, the reaction extent, and a concept termed the “reaction extent entropy” are modeled for the combination reactions A+B2C and the specific case of H2+I22HI. A distinct inverse correlation is found between the first two properties, revealing consistency with the nanoconfinement entropic effect on chemical equilibrium (NCECE). To obtain the time dependence of the instantaneous mixing entropy following equilibration, the Stochastic Simulation (Gillespie) Algorithm is employed. In particular, the smallest nanosystems exhibit a step-like behavior that deviates significantly from the smooth mean values and is associated with the discrete probability distribution of the reaction extent. As illustrated further for molecular adsorption and spin polarization, the current approach can be extended beyond nanoreactions to other confined systems with a limited number of species. Full article
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19 pages, 275 KB  
Article
Kolmogorov Equation for a Stochastic Reaction–Diffusion Equation with Multiplicative Noise
by Kaiyuqi Guan and Yu Shi
Mathematics 2025, 13(10), 1561; https://doi.org/10.3390/math13101561 - 9 May 2025
Viewed by 828
Abstract
Reaction–diffusion equations can model complex systems where randomness plays a role, capturing the interaction between diffusion processes and random fluctuations. The Kolmogorov equations associated with these systems play an important role in understanding the long-term behavior, stability, and control of such complex systems. [...] Read more.
Reaction–diffusion equations can model complex systems where randomness plays a role, capturing the interaction between diffusion processes and random fluctuations. The Kolmogorov equations associated with these systems play an important role in understanding the long-term behavior, stability, and control of such complex systems. In this paper, we investigate the existence of a classical solution for the Kolmogorov equation associated with a stochastic reaction–diffusion equation driven by nonlinear multiplicative trace-class noise. We also establish the existence of an invariant measure ν for the corresponding transition semigroup Pt, where the infinitesimal generator in L2(H,ν) is identified as the closure of the Kolmogorov operator K0. Full article
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