Search Results (82)

Rice straw incorporation is a paddy soil management practice that can reduce environmental pollution, mitigate soil degradation, and minimize nutrient loss. In this study, temporal shifts in soil microbial communities and metabolic profiles were investigated across three key rice growth stages—pre-planting (BS), tillering (TI), and harvest (HA)—to elucidate the ecological effects of straw incorporation. The Shannon diversity and Pielou evenness indices were significantly higher under straw incorporation than under the control at the BS and TI stages, but significantly lower at the HA stage. Straw incorporation also increased the relative abundance of key bacterial taxa, including Polaromonas sp. AER18D145, Sphingomonas sediminicola, and Thiobacillus denitrificans. Functional annotation indicated that the microbial community was mainly associated with amino acid biosynthesis and glycolysis. Metabolomic analysis revealed significant changes in steroids and their derivatives, terpenoid lipids, and carboxylic acids and their derivatives. Three metabolites—3-hexa-isoprenyl-4,5-dihydroxybenzoic acid, LysoPE (16:1(9Z)/0:0), and stachyose—differed significantly across all stages, suggesting their potential as metabolic indicators of straw incorporation. KEGG enrichment analysis identified significant alterations in arachidonic acid, purine, galactose, and pyrimidine metabolism. Redundancy analysis further revealed positive associations of LysoPE (16:1(9Z)/0:0) and stachyose with Brevundimonas sp. Root608 and Polaromonas sp. AER18D145. Full article

Soybean molasses, a by-product of alcohol-based soy protein concentrate production, is rich in stachyose and other functional oligosaccharides, but its high sucrose content and other fermentable non-target sugars hinder the efficient purification of stachyose. In this study, the sugar-utilization patterns of four commonly used microbial chassis or production strains, Escherichia coli W, E. coli BL21, Saccharomyces pastorianus Weihenstephan 34/70, and Komagataella phaffii (formerly Pichia pastoris) GS115, were systematically compared to identify a suitable host for selective stachyose enrichment. Among them, E. coli W showed the best performance in rapidly consuming non-target sugars while retaining stachyose. Based on this strain, a CRISPR–Cas9 engineering strategy was applied by deleting the endogenous α-galactosidase gene melA and overexpressing the sucrose permease gene cscB. The resulting strain selectively and nearly completely removed sucrose and other non-target sugars from soybean molasses, increasing the proportion of stachyose from <30% to >90% of total soluble solids. Further optimization of nitrogen source level, inoculum size, and initial °Brix improved fermentation performance. These results demonstrate an effective biological pre-purification strategy for selective stachyose enrichment from soybean molasses. Full article

The current understanding of microbiota–flavor correlations in Chinese sourdough steamed bread is predominantly derived from the central provinces, with comparatively limited investigation in northeastern and northwestern regions. This study bridges this gap by analyzing traditional starters from Heilongjiang (HLJ) and Ningxia (TX) versus an industrial starter (JM) through integrated metagenomics and untargeted metabolomics. HLJ was dominated by Limosilactobacillus fermentum (14.75%), while TX featured a synergistic Lactiplantibacillus plantarum–Fructilactobacillus sanfranciscensis consortium. Metabolic pathway analysis revealed enhanced glycolysis, amino acid metabolism, and glycerophospholipid transformation driving flavor biosynthesis and dough rheology improvement, supported by nitrogen-metabolizing Bradyrhizobium spp. (6.00–6.61%). Core pathway enrichment established molecular foundations for region-specific flavors: HLJ generated sulfury/pungent notes via the enzymatic conversion of pentyl glucosinolate to isothiocyanates, whereas TX developed caramel–roasted aromas through stachyose/xylose-derived Maillard reactions forming 2-(methylthiomethyl)furan. Both consortia exhibited higher bitterness and lower umami than JM, with HLJ showing marginally higher umami and lower bitterness than TX. These findings elucidate the microbial mechanisms underlying regional flavor differentiation. Full article

Honeybees are vital pollinators that contribute substantially to global ecosystem stability and agricultural productivity. Camellia reticulata, a cross-pollinated crop species, depends on honeybees for successful reproduction. Apis cerana shows reluctance to pollinate C. reticulata, yet the molecular mechanisms underlying this phenomenon remain unexplored. In this study, we performed controlled feeding experiments in which adult worker A. cerana were supplied with stachyose, raffinose, and their combination. We assessed physiological traits including survival rate, sucrose solution consumption, and body weight gain, alongside histological changes in intestinal cell structures. We conducted RNA-seq of gut tissues as well as 16S rRNA sequencing and metabolomic profiling. Our findings revealed that the mixed oligosaccharide treatment significantly reduced the survival rate of workers, and three oligosaccharide treatments significantly reduced sucrose consumption in A. cerana. Both mixed and single-oligosaccharide treatments caused pronounced intestinal cell damage and disrupted the gut microbial community structure. Among the gut microbes, Gilliamella exhibited the most substantial decline in the stachyose group. Metabolomic analysis further demonstrated that oligosaccharide feeding significantly altered amino acid and galactose metabolism pathways, which may play critical roles in oligosaccharide utilization and directly influence honeybee survival. In summary, this study provides new insights into the molecular mechanisms underlying A. cerana mortality associated with C. reticulata pollination. These findings not only enhance our understanding of host-diet-microbiota interactions in honey bees but also offer a theoretical basis for the integrated management of A. cerana for C. reticulata pollination and the development of oligosaccharide-adapted bee diets. Full article

Pulses (edible dry seeds from legumes) are among the most important crops worldwide. These legumes contain a diverse range of carbohydrates, some of which, such as RFOs (raffinose family oligosaccharides), are considered antinutritional factors due to their negative impact on digestion. An analytical method based on high-power ultrasound-assisted extraction and HPLC analysis was developed and validated for the quantitative determination of soluble carbohydrates (verbascose, stachyose, raffinose, sucrose, galactinol, glucose, galactose, fructose, and myo-inositol) in common beans (Phaseolus vulgaris) and peas (Pisum sativum). The proposed method is fast (extraction time: 1 min), reproducible (RDS: 6.9%), accurate (97.5%), and environmentally sustainable. The method was applied to local collections of P. vulgaris (n = 12) and P. sativum (n = 34), revealing similar qualitative profiles but notable quantitative differences. In P. vulgaris, sucrose and stachyose were predominant, while in P. sativum, verbascose stood out. The total sugar content was higher in peas, especially in commercial varieties, which also showed elevated sucrose levels. Some local varieties combined high sugar content with favorable relative levels between RFOs and other sugars, making them valuable candidates for breeding programs. Linear discriminant analysis enabled classification and prediction of species and varieties, confirming the usefulness of soluble carbohydrates as tools for characterizing these plant materials. Full article

This study aimed to identify fungal species causing fruit rot of chestnut (Castanea mollissima Blume) in Hebei Province, China and analyze the resistance differences among major cultivars. A total of 220 fungal isolates were obtained from healthy and diseased kernels, which were classified into six distinct genera: Diaporthe (48.6%), Talaromyces (22.3%), Alternaria (10.5%), Mucor (9.5%), Fusarium (5.5%), and Rhizopus (3.6%). Based on both morphological and molecular analyses, six representative isolates of the six genera were identified as Diaporthe eres Nitschke, Talaromyces rugulosus Samson, N. Yilmaz, Frisvad & Seifert, Alternaria alternata (Fr.) Keissl., Mucor circinelloides Tiegh., Fusarium proliferatum (Matsush.) Nirenberg, and Rhizopus stolonifer (Ehrenb.) Vuill. Among these, D. eres was first reported to cause fruit rot on C. mollissima in China. Moreover, disease resistance evaluation of major cultivars showed significant differences: YG, YSSF, and DBH exhibited strong resistance under both natural conditions (with 1.67% to 5.27% DI after 180 days storage) and artificial inoculation (with 32.96 ± 0.64 to 52.61 ± 0.55 DI); while YJ was highly susceptible (with 47.71% decay incidence and 70.50 ± 7.22 DI). Correlation analysis revealed that the disease index was negatively correlated with sucrose and sorbitol contents, but positively correlated with stachyose and fructose contents. This study advances the understanding of postharvest chestnut fruit rot and provides a theoretical basis for breeding resistant cultivars and developing control strategies to mitigate losses and ensure food safety. Full article

Prebiotics are selectively utilized substrates that modulate gut microbiota and host health, yet different prebiotic structures may elicit distinct ecological and metabolic responses. In this study, we investigated the effects of five structurally diverse prebiotics—isomaltooligosaccharides (IMO), arabinogalactans (AG), pectin, inulin, and stachyose—on human gut microbiota via a 24 h in vitro anaerobic culture with healthy donors’ gut microbiota. Microbial community dynamics were profiled by 16S rRNA gene sequencing, and short-chain fatty acids (SCFAs) production was analyzed. All treatments resulted in decreased α-diversity compared with baseline, with pectin most effectively preserving microbial richness and evenness, whereas stachyose led to the greatest reduction. Community composition and functional profiles shifted in a substrate-specific manner, with AG promoting Bacteroidaceae, IMO stimulating Lachnospiraceae and Faecalibacterium, and pectin supporting balanced microbial structures and SCFA production. Pectin, IMO, and inulin enhanced butyrate levels, whereas AG and pectin promoted propionate formation. These findings demonstrate that prebiotic structural differences strongly shape gut microbial ecology and metabolism, providing a mechanistic basis for rationally selecting and combining prebiotics to beneficially modulate the gut microbiota. Full article

Listeria monocytogenes (LM) is one of the most emerging pathogens responsible for the serious foodborne disease listeriosis. The risk of disease outbreaks can be reduced by suppressing the adherence of LM to the intestinal epithelial cells. This effect can be achieved by prebiotic supplementation. The aim of this work was to determine the effect of prebiotics beta-(1,3)-D-glucan, inulin, fructooligosaccharides, galactooligosaccharides, lactulose, raffinose, stachyose, human milk oligosaccharides (HMOs), and 2’-fucosyllactose on the ability of LM to adhere to the human adenocarcinoma Caco-2 cell line. Despite strain-specific variability, a statistically significant reduction in LM adhesion to intestinal epithelial cells was observed in the presence of beta-(1,3)-D-glucan (~60% reduction), inulin (~46%), and HMOs (~44%). In contrast, the remaining tested prebiotics did not show a significant impact on LM adhesion. These findings highlight the potential of specific prebiotics, especially beta-glucans, to limit LM adherence, suggesting a protective effect for the host. Full article

Background: Steamed Panax notoginseng saponins (SPNSs) can alleviate cyclophosphamide-induced anemia. However, the hepatointestinal effects of SPNSs and their role in ameliorating cyclophosphamide-induced anemia remain unexplored. Objective: To elucidate the hepatointestinal effects of SPNSs and their role in ameliorating cyclophosphamide-induced anemia. Methods: Blood samples were collected and analyzed on days 7 and 14. Liver tissues and small intestinal villi structures were observed via HE staining. Liver and colon content metabolites were detected by liquid chromatography-tandem mass spectrometry (LC-MS/MS). Liver proteins were analyzed by using an Orbitrap Astral mass spectrometer. Colon content microbiota composition was assessed via metagenomics. Signaling pathway protein expression was analyzed via Western blotting (WB). Results: SPNSs significantly increased the red blood cell (RBC) count and hemoglobin (HGB) level by day 14 and alleviated hepatointestinal damage. Hepatic metabolomics revealed: the most abundant metabolites were fatty acids and stachyose on day 7 and amino acid and arachidonic acid derivatives on day 14. KEGG analysis implicated cAMP signaling. Proteomics revealed upregulated immune-related proteins and enhanced PI3K pathway activity (WB-validated). Colon content metabolomics showed increased daidzein, 3-(2,5-dimethoxyphenyl) propanoic acid, γ-CEHC, and adenosine in SPNS groups on day 14. Metagenomics indicated differential abundances of Heminiphilus faecis, Phocaeicola sartorii, and s-bacterium_J10.2018 on day 14. Multiomics integration demonstrated significant correlations between hepatic metabolites, hematopoietic proteins, colon content metabolites, and probiotic bacteria. Conclusions: SPNS alleviates cyclophosphamide-induced hepato-intestinal injury in anemic mice by modulating the gut microbiota and enhancing hepato-intestinal immune defense. Additionally, SPNSs ameliorate anemia in cyclophosphamide-treated mice by activating the cAMP/PI3K/AKT pathway, promoting hepatocyte proliferation, and increasing hematopoietic protein expression. Full article

Small ruminant production is a significant sector of agricultural industry in Texas, USA. Heat stress has a negative effect on productivity and animal health. Cholecalciferol, a form of vitamin D₃, may enhance the function of immune cells and help ensure healthy immune function in farm animals exposed to heat stress. Practical applications of vitamin D₃ against infectious diseases can benefit from the protective effects of a delivery system comprised of soy protein isolate and stachyose in emulsion gel. The prebiotic oligosaccharide stachyose has shown to have a great potential as a substrate for beneficial intestinal bacteria, which are thought to modulate the immune system. Cellular and humoral immunity are both impaired in dairy animals under heat stress. The delivery of vitamin D₃ embedded within the soy protein isolate-stachyose emulsion gel resulted in a marked increase in 25-hydroxyvitamin D₃ [25-(OH)-D₃] concentration in blood serum. Chicken egg albumin (OVA)-immunized goats produced low anti-OVA immunoglobulin G (IgG) responses. In contrast, OVA-immunized goats fed vitamin D₃ within the soy protein isolate-stachyose emulsion gel diet strongly stimulated antibody production. These results show that anti-OVA IgG responses can be modulated in dairy goats using vitamin D₃, particularly if this vitamin is delivered in the form of emulsion gel. The results seem to depend on the highly hydrated gel matrix of soy protein isolate-stachyose at the low pH of the stomach as monitored by oxygen-17 (¹⁷O) and proton (¹H) nuclear magnetic resonance (NMR). In addition, the prebiotic nature of stachyose may boost beneficial gut bacteria, most notably for immune health and reducing the risk of infectious diseases. Full article

This study aimed to optimize the inoculation dosage and fermentation duration to enhance the protein content and reduce soluble oligosaccharides in soybean meal using Aspergillus oryzae and assessed its performance in dog food extrusion. A 3 × 5 factorial design was used to determine the optimal fermentation conditions. These conditions were applied to ferment soybean meal in bulk for nutritional analysis. Finally, the impact of fermentation on extrusion processing was assessed by formulating and extruding four diets: SBM (30% soybean meal), AMF (30% soybean meal with 1% Amaferm^®—A. oryzae biomass), FSBM (30% fermented soybean meal), and SPI (18% soy protein isolate). Diets were extruded with a single-screw extruder, and physical characteristics of kibbles, particle size distribution, and viscosity of raw mixes were analyzed. The optimal fermentation conditions were 1 × 10⁴ spore/g substrate for 36 h, which increased the crude protein content by 4.63% DM, methionine and cysteine total content by 0.15% DM, and eliminated sucrose, while significantly reducing stachyose, raffinose, and verbascose (95.22, 87.37, and 41.82%, respectively). The extrusion results showed that FSBM had intermediate specific mechanical energy (SME), in-barrel moisture requirements, and sectional expansion index (198.7 kJ/kg, 28.2%, and 1.80, respectively) compared with SBM (83.7 kJ/kg, 34.5%, and 1.30, respectively) and SPI (305.3 kJ/kg, 33.5%, and 2.55, respectively). The FSBM also exhibited intermediate particle size distribution and the least raw mix viscosity. These findings demonstrate that A. oryzae fermentation enhances the nutrient profile of soybean meal while improving extrusion efficiency and kibble quality, supporting its potential use as a sustainable pet food ingredient. Full article

Cucurbita pepo (CP) seeds are traditionally used to alleviate lower urinary tract symptoms associated with benign prostatic hyperplasia and overactive bladder. While these effects are often attributed to lipophilic constituents, recent studies have highlighted the therapeutic potential of oil-free hydroethanolic extracts. However, their composition remains insufficiently characterized, considering the species’ significant phenotypic and phytochemical variability. This study aimed to characterize the phytochemical profile of hydrophilic hydroethanolic seed extracts from ten CP cultivars originating from different European regions, with a focus on compositional variability. The elemental composition, along with primary and secondary metabolites, was analyzed using established spectroscopic and chromatographic methods. The extracts showed considerable variation in protein (45.39 to 114.58 mg/g dw) and free amino acid content (46.51 to 111.10 mg/g dw), as well as differences in elemental composition. Principal component analysis revealed distinct clustering patterns, with several samples displaying metabolite profiles comparable to the Cucurbita pepo var. styriaca variety currently recommended by the European Pharmacopoeia (Ph. Eur.) and the Committee on Herbal Medicinal Products (HMPC). These findings open the possibility of using other CP varieties as alternative sources for extract preparation and offer novel insights into the composition of less explored hydrophilic extracts derived from CP seeds. Full article

Late gestation is a critical period for regulating maternal peripartum physiological metabolism and gut microbiota balance. Fermented diets have been widely recognized as effective exogenous nutritional interventions capable of modulating the maintenance of gut microbiota homeostasis. However, the mechanism through which fermented diets modulate the gut microbiota in late-gestation remains poorly understood. In this study, an in vitro fermentation model combined with chemical composition analysis, untargeted metabolomics, and high-throughput sequencing was employed to investigate the metabolic alterations during soybean meal (SBM) fermentation and the regulatory effects of fermented soybean meal (FSBM) on gut microbiota of late-gestation sows. The findings revealed that fermentation significantly increased the levels of crude protein, lactic acid, acid-soluble protein, lysine, histidine, and total amino acids of SBM. Conversely, the levels of crude fiber, NDF, ADF, starch, and non-starch polysaccharides were markedly reduced, compared to the unfermented group. A total of 941 differentially expressed metabolites were identified between SBM and FSBM. Specifically, FSBM elevated the levels of lactic acid, L-pyroglutamic acid, 2-aminoisobutyric acid, and tyrosine, while substantially decreasing the levels of raffinose, sucrose, and stachyose. Metabolic pathway analysis identified glutathione metabolism, tyrosine metabolism, and pantothenate and coenzyme A (CoA) biosynthesis as the key pathways involved in SBM fermentation. In vitro fermentation experiments demonstrated that FSBM substantially increased the production of short-chain fatty acids (SCFAs) and notably increased the relative abundance of sows gut commensal Lactobacillus and Limosilactobacillus in late gestation. In summary, this study demonstrated that co-fermentation with bacteria and enzymes pretreatment of soybean meal reduced fiber components and enriched bioactive metabolites, optimizing intestinal microbial composition and increasing SCFA production in late-pregnant period. The present study provides novel insights into the regulatory effects of fermented diets on gut microbiota in late-gestation period from the perspectives of nutritional composition and metabolites. Full article

Grafting is widely used as a breeding method to enhance productivity and resilience. However, the mechanisms of graft healing remain poorly understood. In this study, we performed Malus domestica (‘Hanfu’) homograft and observed morphological and anatomical changes during the healing process in the graft junction within 40 days after grafting (DAG). The results showed that the healing process was divided into two phases: 0–20 days (callus proliferation phase) and 20–40 days (vascular bundle reconnection phase). During the early stage (20 DAG), gene expression exhibited asymmetry between the scion and rootstock, whereas synchronization occurred in the late stage (40 DAG). Transcriptomic and metabolomic analyses of the scion and rootstock during these two critical phases identified that differentially expressed genes (DEGs) were enriched in “Carbon fixation by Calvin cycle” and “photosynthesis-related pathways”, while differentially expressed metabolites (DEMs) were clustered in “Galactose metabolism”, implying a critical role of carbohydrates in grafting. Genes encoding enzymes involved in sugar biosynthesis, such as amylase (MdAMY), invertase (MdINV), galactinol synthase (MdGS), raffinose synthase (MdRS), and stachyose synthase (MdSS), were generally more highly expressed during Phase I than Phase II. In contrast, genes encoding enzymes related to sugar consumption, such as fructose kinases (MdSUS), cellulose synthases (MdCESA), and galacturonosyltransferase (MdGAUT), showed weak expression in Phase I but were strongly activated in Phase II. Glucose, sucrose, galactose, and melibiose levels increased significantly at 20 DAG compared with 0 DAG and subsequently decreased by 40 DAG. Exogenous application of 0.5% sucrose, raffinose, or melibiose significantly enhanced vascular bundle reconnection rates at 7 DAG compared with the control group (p < 0.01), confirming the pivotal role of sugar metabolism in graft healing. Full article

To enhance the nutritional value of food products, new functional extruded products have been developed based on combinations of corn and lentil flour (70:30), with added salt (1.25%), sugar (5%), and resistant starch V (5–20%), and fortified winemaking by-products (fermented and unfermented pomace/pomace seeds) (5–20%). The formulations were processed through a 32 mm twin screw extruder. The developed extrudates were analyzed for bioactive content. The findings show that among the experimental formulations, those with the highest concentration (20%) presented the greatest amounts of the following functional compound total dietary fiber, total arabinoxylans, resistant starch, total phenols, total flavonols, and total anthocyanins, and the lowest content of raffinose and stachyose. These study results indicate that extrusion is an effective method for adding value to underutilized commodities, such as winemaking by-products. A future sensory evaluation study will be conducted on the extruded products with the highest amount of winemaking by-products of 20%. Full article