Search Results (1,962)

Climate change and land-use intensification are speeding up the loss of ecosystem services that support human health, food security, and environmental stability. Vegetative interventions—such as urban forests in cities and cover crops in farming systems—are increasingly seen as nature-based solutions for climate adaptation. However, their benefits are often viewed separately. This review combines 20 years of research to explore how these strategies, together, improve provisioning, regulating, supporting, and cultural ecosystem services across various landscapes. Urban forests help reduce urban heat islands, improve air quality, manage stormwater, and offer cultural and health benefits. Cover crops increase soil fertility, regulate water, support nutrient cycling, and enhance crop yields, with potential for carbon sequestration and biofuel production. We identify opportunities and challenges, highlight barriers to adopting these strategies, and suggest integrated frameworks—including spatial decision-support tools, incentive programs, and education—to encourage broader use. By connecting urban and rural systems, this review underscores vegetation as a versatile tool for resilience, essential for reaching global sustainability goals. Full article

Root restriction is an agronomic technique that influences plant morphology, physiology, and productivity. This study investigates the effects of root restriction on tomato growth, fruit quality, yield, and rhizosphere microbial communities using three distinct substrates: sand, soil, and peanut shell substrate (PSS), within a Simplified Automatic Soilless Culture System (SAS). Results demonstrated that root restriction at 8 cm height significantly enhanced fruit quality indicators: soluble sugar content increased by 69.01% (sand), 53.84% (soil), and 37.67% (PSS); soluble protein increased by 77.23%, 48.14%, and 66.51%; and lycopene increased by 100.03%, 62.33%, and 74.59%, respectively, compared to the 24 cm baseline. However, single-plant yield declined by 28.30% (sand), 64.28% (soil), and 22.06% (PSS). TOPSIS analysis (Technique for Order Preference by Similarity to Ideal Solution) identified PSS at 8 cm as the optimal combination for balancing quality and yield (Cj = 0.631). Microbial amplicon sequencing revealed higher rhizosphere microbial diversity in tomatoes grown in soil and peanut shell substrate compared to sand. These three types of growing media (soil, sand, and peanut shell substrate) establish the rhizosphere of bacterial and fungal communities by selecting specific microbial taxa. Changes in container height drive the reduction–oxidation functional divergence of bacterial communities, affecting the connectivity and complexity of microbial networks. Full article

Graphene oxide (GO) is a carbon-based nanomaterial explored for agricultural and forestry uses, but plant responses are strongly subject to both the dose and the route of exposure. We summarized recent studies with defined graphene oxide (GO) exposures by seed priming, foliar delivery, and root or soil exposure, while comparing annual crops with woody forest plants. Mechanistic progress points to a shared physicochemical basis: surface oxygen groups and sheet geometry reshape water and ion microenvironments at the soil–seed and soil–rhizosphere interfaces, and many reported shifts in antioxidant enzymes and hormone pathways likely represent downstream stress responses. In crops, low-to-moderate doses most consistently improve germination, root architecture, and tolerance to salinity or drought stress, whereas high doses or prolonged root exposure can cause root surface coating, oxidative injury, and photosynthetic inhibition. In forest plants, evidence remains limited and often relies on seedlings or tissue culture. For forest plants with long life cycles, processes such as soil persistence, aging, and multi-seasonal carry-over become key factors, especially in nurseries and restoration substrates. The available data indicate predominant root retention with generally limited root-to-shoot translocation, so residues in edible and medicinal organs remain insufficiently quantified under realistic-use patterns. This review provides a scenario-based framework for crop- and forestry-specific safe-dose windows and proposes standardized endpoints for long-term fate and ecological risk assessment. Full article

Pneumonia caused by the facultative intracellular pathogen Rhodococcus equi stands out as one of the most significant infections associated with a notably high mortality rate in foals worldwide. Limited therapeutic options and inadequate control and prevention measures result in substantial economic losses, underscoring the need for enhanced interventions. A cross-sectional, multi-province study was conducted on racehorse-breeding farms in Türkiye to estimate prevalence and index virulence, assess relatedness, and summarize antimicrobial susceptibility within a farm management context. Nasal and fecal swabs and environmental samples (soil and water) were cultured and confirmed; virulence was assessed with vapA-specific PCR, genetic relationship determined with PFGE, and antimicrobial susceptibility using disk diffusion. R. equi was detected in 10% of nasal swabs, 22.9% of fecal swabs, 29.4% of soil samples, and 5.9% of water samples; 46.2% of confirmed isolates were vapA-positive. Susceptibility patterns were favorable overall, with frequent ampicillin resistance, infrequent resistance to macrolides and rifampin, rare multidrug resistance, and no vancomycin resistance was detected. PFGE demonstrated substantial genotypic diversity, with 12 clusters and 29 distinct pulsotypes. Farm-level observations were exploratory. More frequent mechanical paddock cleaning coincided with the absence of foal deaths, and vapA-positive isolates were observed on farms with prior infection. Taken together, these findings support routine paddock hygiene, prompt isolation of clinically affected foals, culture-guided therapy, and continued surveillance, and they indicate a need for longitudinal and genomic studies to evaluate the impact. Full article

In this study, we investigated the presence and diversity of FLA in 62 environmental samples collected across Tenerife, Canary Islands, Spain including agricultural and playground soils, and on double treated water from public refrigerated fountains. Amoebae were isolated by culturing processed samples onto 2% Non-Nutrient Agar plates (NNA) which were checked daily for further processing up to molecular characterization. In this case, two approaches for molecular identification were assessed: direct multiplex qPCR targeting four potentially pathogenic FLA (Acanthamoeba spp., Vermamoeba vermiformis, Naegleria fowleri, and Balamuthia mandrillaris) DNA, and culture-based isolation followed by standard PCR and sequence analysis. Regarding qPCR results, 72.6% (45/62) of the samples were positive for at least one FLA, with V. vermiformis (37/62) and Acanthamoeba spp. (34/62) being the most frequent. Moreover, B. mandrillaris was detected for the first time in the Canary Islands in 6 out of 62 samples. Results from standard PCR from cultured isolates confirmed the presence of Acanthamoeba (mainly genotype T4) and Vermamoeba and also allowed the identification of Vahlkampfia and Vannella genera, as well as the genus Rhogostoma—its first report in the Canary Islands. Thermotolerance and osmotolerance assays were performed on Acanthamoeba spp. and, innovatively, on V. vermiformis isolates. Both were capable of surviving at 37 °C and during incubation with 0.5 M mannitol, suggesting potential pathogenicity. However, growth was significantly impaired under harsher conditions (42 °C and 1 M mannitol). These findings underscore the widespread occurrence of FLA in public and agricultural environments in Tenerife and highlight their potential risk to public health. Their ability to act as carriers of pathogenic bacteria/viruses further reinforces the need for routine surveillance and preventive measures in the environment. Full article

Conventional and organic agriculture can both cause soil microbial community structure (SMCS) destruction, infertility, and abandonment. The application of soil productivity-improving biofertilizers is a sustainable practice that requires holistic knowledge, including complex biointeractions, diverse microbial metabolism, and culture requirements, the last of which rely on methodology and technology. In this study, a holistic culture-based and meta-analysis approach was employed to explore pristine and domesticated soils for presumptive plant growth-promoting (PGP) bacteria. Various soil samples were logistically acquired and processed using enrichment and heat alternatives. Morphologically diverse isolates were streak-purified and analyzed for 16S rRNA bacterial identification. Meta-analysis of PGP bacteria in domesticated environments was conducted using Google Search and NCBI PubMed. Soil fertility was analyzed for the pH and nitrogen/phosphorus/potassium (NPK) contents using biochemical tests. Notably, 7 genera and 15 species were differentially recovered, with Bacillus being the most prevalent and diverse in species. Conversely, Aeromonas, Lactobacillus, Lelliottia, Pseudomonas, and Staphylococcus were found only in pristine soil. While soil pH was consistent in all pristine soil samples, NPK contents ranged widely across the pristine (i.e., P/K) and domesticated samples (i.e., N/P/K). These findings could enhance biofertilizer SMCS, function, and effectiveness in the agricultural productivity needed to feed the expanding population. Full article

Phosphorus (P) is an essential nutrient in plant development, but its availability in the soil is often limited due to chemical fixation and poor solubility. This study presents the development, characterization and evaluation of a novel granular bioinoculant formulated with Aspergillus tubingensis (P-solubilizing) and Trichoderma virens (P-mineralizing) using clinoptilolite (CZ) as a carrier to improve P bioavailability. The formulation process included the evaluation of the proposed components, the standardization of conidia production in different media cultures and conditions, the elaboration and characterization of the bioinoculant and its evaluation in plants. In this study, in vitro analysis demonstrated the synergistic effect of the components, showing that in all treatments with dual inoculation and CZ, the amount of soluble phosphorus (SP) was higher than in their counterparts (from 27.8 to 36.8 mg·L⁻¹). A concentration greater than 1 × 10⁹ CFU·mL⁻¹ was obtained by standardizing the production of conidia in different media (PDA, V8-Agar and Molasses Agar), which were then used to produce granular batches containing at least 2 × 10⁷ CFU·g⁻¹. Furthermore, the size (88% of the granules measured <4.5 mm), purity (<2 CFU·g⁻¹ in 10⁻⁴ dilution), and moisture content of the prototype granules (3.3–3.8%) were confirmed to be within established international quality parameters. Plant evaluations in chili and tomato demonstrated the formulation efficacy, showing an increase in both soluble and foliar P content (with at least 30% more than controls), alongside improvements in all parameters evaluated that are related to plant growth promotion (with at least 15% more growth than controls). The development of this formulation prototype represents a focused effort toward process standardization and optimization required to validate developed formulations, thus promoting the advancement of applied biotechnology. Full article

Functional properties of coastal halophytes are important for development of salt-tolerant cash crop cultures. The study of salt tolerance in coastal dune-building grass Leymus arenarius holds significant importance for its application in land reclamation, soil stabilization, and enhancing crop resilience to salinity stress. We used two accessions (LA1 and LA2) of L. arenarius to compare effects of salinity caused by NaCl and NaNO₃ on growth, ion accumulation and mineral nutrition in controlled conditions. L. arenarius plants exhibited high tolerance to sodium salts, with distinct effects on growth and development observed between chloride and nitrate treatments. While both salts negatively impacted root biomass, nitrate treatment (50–100 mmol L⁻¹) increased leaf number and biomass in LA2 plants, whereas chloride treatment decreased tiller and leaf sheath biomass. Despite individual variations, salinity treatments showed comparable effects on traits like tiller and leaf count, as well as leaf blade and sheath biomass. Salinity increased water content in leaf blades, sheaths, and roots, with LA2 plants showing the most pronounced effects. Chlorophyll a fluorescence measurements indicated a positive impact of NaNO₃ treatment on photosynthesis at intermediate salt concentrations, but a decrease at high salinity, particularly in LA2 plants. The accumulation capacity for Na⁺ in nitrate-treated plants reached 30 and 20 g kg⁻¹ in leaves and roots, respectively. In contrast, the accumulation capacity in chloride-treated plants was significantly lower, approximately 10 g kg⁻¹, in both leaves and roots. Both treatments increased nitrogen, phosphorus, and manganese concentrations in leaves and roots, with varying effects on calcium, magnesium, iron, zinc, and copper concentrations depending on the type of salt and tissue. These findings highlight the potential of L. arenarius for restoring saline and nitrogen-contaminated environments and position it as a valuable model for advancing research on salt tolerance mechanisms to improve cereal crop resilience. Full article

Soils represent the largest reservoir of organic carbon (OC) in terrestrial ecosystems, storing approximately 1500 Gt C. Forest and grassland ecosystems contribute 39% and 34% to global terrestrial carbon stocks, with soils holding about 44% and 89% of forest and grassland carbon, respectively. Land-use changes, such as the conversions between forest and grassland ecosystems, can strongly influence soil carbon accumulation, though the direction and magnitude remain uncertain. Comparative data from paired-plot studies of forest and grassland soils are still limited. In this study, we conducted pairwise comparisons of total OC and total nitrogen (TN) stocks in mature forest and climax grassland soils along a climatic and pedogenic gradient encompassing Retisols, Luvisols, and Chernozems. Relationships between OC and TN stocks (0–10 cm) and soil physicochemical properties—OC and TN contents, bulk density, pH, clay content, and humus fractional composition, as well as biological indicators—the abundance of culturable fungi and bacteria, microbial biomass carbon, potential metabolic activity, and activities of laccase and dehydrogenase, were evaluated. Strong positive correlations were found between OC and TN stocks and OC and TN contents (r = 0.62–0.99), pH (r = 0.79–0.81), clay content (r = 0.70–0.87), and the fraction of humic acids bound with calcium (r = 0.73). OC stocks also correlated strongly with dehydrogenase activity (r = 0.85–0.95). At 0–10 cm depth, OC stocks were higher in grassland soils than in forest soils by factors of 1.6–1.7 in Retisols and 1.4–1.5 in Chernozems. Similarly, TN stocks were 1.6–2.0 times greater in grasslands across all soil types. Community-level physiological profiling revealed higher potential metabolic activity in forest soils compared with grasslands, with the strongest differences in Retisols and Luvisols, while contrasts were attenuated in Chernozems. Overall, the results highlight the fundamental role of organo-mineral interactions and calcium binding in OC stabilization, as well as the likely involvement of dehydrogenase activity in the biogenic formation of calcium carbonates that contribute to this process. Full article

Phosphate-solubilizing rhizobacteria associated with the Solanum tuberosum L. cultivar ‘Superchola’ were isolated and characterized to improve our understanding of plant growth promotion in agricultural systems. Bacteria were isolated by serial dilutions, and the morphology of the colonies was characterized on nutrient agar culture medium. In addition, morphological identification was achieved by Gram staining. The ability to solubilize phosphate was assessed in Pikovskaya agar culture medium, while molecular identification involved the amplification of the partial 16S rRNA gene using the polymerase chain reaction. In the Píllaro canton, the highest number of colony-forming units per gram of soil was recorded at 9.72 × 10⁹. Among the isolated strains, 62% exhibited circular morphology, 92% had a smooth texture, and 85% displayed entire margins. Notably, 83% of the isolates were Gram-negative, with 50% exhibiting a bacillary form. The most effective phosphate solubilizers were from the Mocha canton, particularly the isolate CC-FCAGP-BSF6, which showed superior solubilization capacity. Molecular identification revealed bacterial isolates from four genera, i.e., Bacillus, Pseudomonas, Lysinibacillus, and Paenibacillus. These strains exhibited significant phosphate solubilization in vitro and resulted in increased leaf area (0.21–0.49, p = 0.038), fresh mass (0.46–0.87, p = 0.014), dry mass (0.092–0.096, p = 0.047), and leaf area index (0.14–0.33, p = 0.026) in the S. tuberosum cultivar ‘Superchola’ in vitro plants. This study identifies bacterial species associated with the rhizosphere of S. tuberosum in Ecuador and highlights their potential for promoting plant growth and solubilizing phosphates. Full article

In Japan, strawberries are produced in the off-season (June to November) in cool regions; however, the high temperatures and strong sunlight limit fruit production. Dark septate endophytic fungi (DSEs) support growth and flower bud formation of plants grown in environments unsuitable for plant growth. In this study, we investigated the effects of DSE on dry matter production and flower bud formation in strawberry plants grown in the summer and autumn. The seeds were sown in soil mixed with DSE on 5 February 2024. The DSEs used were Cladophialophora chaetospira SK51 (S) and Cc. MNB12 (M), and Veronaeopsis simplex Y34 (Y). Plants were planted in a plastic house on April 18. The total dry weight was significantly increased by DSEs. This is because S and Y-cultured plants did not show a significant decrease in leaf emergence under high temperatures, unlike those grown with M; however, its leaf area was larger than that of the control. This resulted in a larger leaf area for receiving light and higher cumulative light reception and light-use efficiency. Although the DSEs increased cumulative fruit yield, the harvest period was limited to July because of the extreme summer heat. In addition, there was no difference in the budding date or flowering date between the treatments. These results suggest that DSEs improve light use efficiency, thereby increasing total dry matter weight and contributing to increased fruit yield in summer-autumn cultivation. Full article

Calonectria ilicicola (anamorph: Cylindrocladium parasiticum) is a globally important soil-borne fungal pathogen, causing Cylindrocladium black rot (CBR) in peanuts (Arachis hypogaea) and red crown rot (RCR) in soybeans (Glycine max), two legume crops central to global food security. Under favorable conditions, these diseases can cause yield losses of 15–50%, with severe epidemics causing substantial economic damage. A defining feature of C. ilicicola is its production of melanized microsclerotia that persist in soil for up to seven years, complicating long-term disease management across major production regions worldwide. The recent spread of RCR into the U.S. Midwest highlights the adaptive potential of the pathogen and underscores the urgency of updated, integrated control strategies. This review synthesizes current knowledge on disease symptoms, pathogen biology, the life cycle, isolation techniques, and molecular diagnostics, with particular emphasis on recent genomic and multiomics advances. These approaches have identified key virulence-associated genes and core pathogenicity factors, providing new insights into host–pathogen interactions and enabling more targeted resistance breeding through marker-assisted selection and the use of wild germplasm. We critically evaluate integrated disease management strategies, including host resistance, chemical and biological control, cultural practices, and physical interventions, highlighting their complementarities and limitations. By integrating classical pathology with emerging molecular and ecological innovations, this review provides a comprehensive background for developing more effective and sustainable management approaches for CBR and RCR. Full article

The world faces increasing food, environmental, and human security issues, primarily attributed to an overburdened agricultural sector struggling to keep pace with rising population and demand for food, energy, and fiber. Advances in food production and agriculture, especially with monoculture farming, have continued to meet these demands but at a high price regarding resource depletion and environmental devastation. This is especially severe in developing world areas with rural populations with thin resource margins. Regenerative agriculture has emerged as a solution to provide shielding for food production, ensure environmental protection, and promote social equity while addressing many of these issues. Regenerative agriculture food production aims to restore soils, forests, waterways, and the atmosphere and operate with lower offsite negative environmental and social impacts. This review discusses the fundamental principles and practices of sustainable plant protection for regenerative farming. It focuses on the role of biological and ecological processes, reduces non-renewable inputs, and aims to incorporate traditional ecological knowledge into pest control practices. It offers essential transition strategies, including critical changes from conventional integrated pest management (IPM) to agro-ecological crop protection, focusing on systemic approaches to design agroecosystems. It also reaffirms the importance of a vast diversity of pest control methods that are culturally, mechanistically, physically, and biologically appropriate for regenerative farming practices. Ultimately, the aim is to encourage ecological, economic, and social sustainability for the future of more resilient and controlled agricultural practices. Full article

Free-living amoebae (FLA) are protozoa ubiquitous in nature, isolated from a variety of environments worldwide. In addition to their natural distribution, some species have been found to be pathogenic to humans. In the present study, FLA presence was evaluated and characterized at the molecular level from different water and soil samples in Fuerteventura Island, Canary Islands, Spain. A total of 31 samples were analyzed by culture and molecular assays (q-PCR and PCR). Moreover, the microbiological quality of the water samples was examined as required by current legislation and international standards. The obtained data revealed that the genus Acanthamoeba was the most prevalent genus of FLA in soil samples and the species Vermamoeba vermiformis was the most isolated in water samples collected from Fuerteventura by culture and molecular assays, q-PCR, and conventional PCR/Sanger sequencing. On the other hand, a microbiological analysis revealed heterogeneous contamination patterns. Escherichia coli was detected in several samples, with some exhibiting high counts while others showed no presence. Salmonella spp. appeared in multiple samples, particularly FTVW1, FTVW9, and FTVW13, whereas Shigella spp. was only found in one sample (FTVW1). Moreover, q-PCR detection offers advantages such as reduced detection time and cost. In addition, culture was proven to be more effective for confirming FLA viability and isolating a greater variety of FLA. Overall, the occurrence of potentially pathogenic free-living amoebae in habitats related to the human population, as reported in the present study, supports the relevance of FLA as a potential health threat to humans. Full article

The interaction between organic and inorganic nutrients, bacterial communities, and soil fertility has been well documented over time. Conventional agricultural systems heavily utilize both inorganic and organic fertilizers, each exerting distinct effects on soil microbial dynamics and plant growth. The objective of our experiments was to identify the most effective fertilization strategy for improving the biological quality of a microbiologically impoverished and low-productivity soil. To this end, four fertilization strategies were evaluated: (i) organic fertilizers characterized by a high content of organic carbon (Fertil 4-5-7—variant 1); (ii) organic fertilizers with 12% organic nitrogen from proteins (Bio Ostara N—variant 2) (iii) combined inorganic–organic fertilizers (P35 Bio—variant 3) and (iv) mineral (inorganic) fertilizers (BioAktiv—variant V4). This study aimed to assess the short-term effects of fertilizers with varying chemical compositions on the density of cultivable heterotrophic bacteria and their associated dehydrogenase (DH) activity in a petrocalcic chernozem soil containing pedogenic carbonates. Soil sampling was conducted according to a randomized block design, comprising four replicates per treatment (control plus four fertilizer types). The enumeration of cultivable bacteria was performed using Nutrient Agar and A2R Agar media, whereas dehydrogenase activity (DHA) was quantified based on the reduction of 2,3,5-triphenyl-2H-tetrazolium chloride (TTC) to 1,3,5-triphenyl-tetrazolium formazan (TPF) by bacterial dehydrogenase enzymes. Marked differences were observed in both parameters between the plots amended with inorganic fertilizers and those treated with organic fertilizers, as well as among the organic fertilizer treatments of varying composition. The most pronounced increases in both bacterial density and dehydrogenase activity (DHA) were recorded in the plots receiving the fertilizer with a high organic nitrogen content. In this treatment, the maximum bacterial population density reached 6.25 log₁₀ CFU g⁻¹ dry soil after approximately two months (May), followed by a significant decline starting in July. In contrast, DHA exhibited a more rapid response, reaching its peak in April (42.75 µg TPF g⁻¹ soil), indicating an earlier DHA activation of microbial metabolism. This temporal lag between the two parameters suggests that enzymatic activity responded more swiftly to the nutrient inputs than did microbial biomass proliferation. For the other two organic fertilizer variants, bacterial population dynamics were broadly similar, with peak densities recorded in June, ranging from 5.98 log₁₀ CFU g⁻¹ soil (V3) to 6.03 log₁₀ CFU g⁻¹ soil (V1). A comparable trend was observed in DHA: in V3, maximum DHA was attained in June (30 µg TPF g⁻¹ soil), after which it remained relatively stable, whereas in V1, it peaked in June (24.05 µg TPF g⁻¹ soil) and subsequently declined slightly toward the end of the experimental period. Overall, the temporal dynamics of bacterial density and DHA demonstrated a strong dependence on the quality and biodegradability of the organic matter supplied by each fertilizer. Both parameters were consistently lower under inorganic fertilization compared with organic treatments, suggesting that the observed increases in microbial density and activity were primarily mediated by the enhanced availability of organic substrates. The relationship between the density of culturable heterotrophic bacteria and dehydrogenase (DH) activity was strongly positive (r = 0.79), indicating a close functional linkage between bacterial density and oxidative enzyme activity. This connection suggests that the culturable fraction of the heterotrophic microbial community plays a key role in the early stages of organic matter mineralization derived from the applied fertilizers, particularly in the decomposition of easily degradable substrates. Full article