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17 pages, 1465 KB  
Article
High-Solids Processing of Palmaria palmata for Feed Applications: Effects of Alkaline Autoclaving and Sequential Enzymatic Treatment
by Catarina Ramos-Oliveira, Marta Ferreira, Isabel Belo, Aires Oliva-Teles and Helena Peres
Phycology 2026, 6(1), 12; https://doi.org/10.3390/phycology6010012 - 8 Jan 2026
Abstract
Macroalgae are increasingly recognized as a valuable source of nutrients and bioactive compounds for animal nutrition, including for aquatic species. However, the complex structure of the macroalgal cell wall limits the accessibility of intracellular components, restricting their use in feeds. To overcome this [...] Read more.
Macroalgae are increasingly recognized as a valuable source of nutrients and bioactive compounds for animal nutrition, including for aquatic species. However, the complex structure of the macroalgal cell wall limits the accessibility of intracellular components, restricting their use in feeds. To overcome this limitation, macroalgal hydrolysis using various technological treatments has been tested, often employing a low solid-to-water ratio, which complicates downstream processing due to phase separation. In contrast, high-solids loading hydrolysis has the advantage of producing a single and consolidated fraction, simplifying subsequent processing and application. The present study assessed the effectiveness of high-solids loading water or alkaline (0.5 and 1N NaOH) autoclaving for 30 or 60 min, applied alone or followed by sequential enzymatic hydrolysis, using a xylanase-rich enzymatic complex aimed at promoting cell wall disruption and increasing the extractability of intracellular components in the red macroalga Palmaria palmata with minimal free water. The 1N NaOH treatment for 30 min decreased neutral and acid detergent fiber while increasing Folin–Ciocalteu total phenolic content (GAE) (expressed as gallic acid equivalent) and the water-soluble protein fraction and decreased crude protein, indicating enhanced extractability of these components. Microscopic examination showed relatively mild structural changes on the surface of P. palmata after high-solids loading alkaline (1N NaOH) autoclaving for 30 min. Following alkaline or water treatment, the enzymatic complex hydrolysis further increased the Folin–Ciocalteu total phenolic content (GAE), with minimal effects on NDF, ADF, or crude protein. Overall, these results showed that high-solids loading alkaline autoclaving, with or without subsequent enzymatic hydrolysis, effectively disrupts P. palmata cell walls and induces substantial modifications while simplifying processing by avoiding phase separation. Full article
(This article belongs to the Special Issue Development of Algal Biotechnology)
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34 pages, 3876 KB  
Article
Complex I Modulator BI4500 Reduces MASH by Limiting Oxidative Stress and Reprogramming Lipid Metabolism via AMPK in MCD Rats
by Laura Giuseppina Di Pasqua, Sofia Lotti, Michelangelo Trucchi, Giuseppina Palladini, Anna Cleta Croce, Francesca Protopapa, Fausto Feletti, Stefan G. Kauschke, Peng Sun, Mariapia Vairetti and Andrea Ferrigno
Antioxidants 2026, 15(1), 82; https://doi.org/10.3390/antiox15010082 - 8 Jan 2026
Abstract
Background: Metabolic-dysfunction-associated steatotic liver disease (MASLD) is a multifactorial liver disease in which mitochondrial dysfunction, oxidative stress, and inflammation play key roles in driving the progression toward metabolic dysfunction-associated steatohepatitis (MASH) and hepatocellular carcinoma (HCC). Dysfunctional mitochondria generate excess reactive oxygen species (ROS), [...] Read more.
Background: Metabolic-dysfunction-associated steatotic liver disease (MASLD) is a multifactorial liver disease in which mitochondrial dysfunction, oxidative stress, and inflammation play key roles in driving the progression toward metabolic dysfunction-associated steatohepatitis (MASH) and hepatocellular carcinoma (HCC). Dysfunctional mitochondria generate excess reactive oxygen species (ROS), impair antioxidant defenses, activate pro-inflammatory pathways and hepatic stellate cells, and perpetuate liver injury. Mitochondrial Complex I is a major ROS source, particularly under conditions of dysregulated energy metabolism. Since Complex I inhibition by metformin was shown to reduce ROS and activate the adenosine monophosphate-activated protein kinase (AMPK), this study aimed to evaluate whether a novel Complex I Modulator (CIM, BI4500) could attenuate oxidative stress, inflammation, and consequently reduce lipid accumulation and fibrosis in a methionine- and choline-deficient diet (MCD)-fed rat model of MASH. Methods: Rats were fed an MCD or an isocaloric control diet for six weeks. From week four, animals received daily oral treatment with CIM (10 mg/kg) or vehicle (Natrosol). At the endpoint, liver tissue was collected for histological, biochemical, and molecular analyses. Lipid droplet area, inflammatory infiltration, and collagen deposition were evaluated on tissue sections; total lipid content and oxidative stress markers were assessed in homogenates and isolated mitochondria. Molecular pathways related to oxidative stress, lipid metabolism, and fibrosis were assessed at protein and mRNA levels. Results: CIM treatment significantly reduced oxidative stress (ROS, lipid peroxidation, nitrogen species), promoting AMPK activation and metabolic reprogramming. This included increased expression of peroxisome proliferator-activated receptor alpha (PPAR-α) and its target genes, and decreased sterol regulatory element binding protein-1c (SREBP-1c)-driven lipogenesis. These changes halted fibrosis progression, as confirmed by Picro-Sirius Red staining and fibrosis markers. Conclusions: these findings indicate that Complex I modulation may represent a promising strategy to counteract MASLD progression toward MASH. Full article
(This article belongs to the Section Health Outcomes of Antioxidants and Oxidative Stress)
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28 pages, 6853 KB  
Article
Colors for Resources: Reward-Linked Visual Displays in Orchids
by Gabriel Coimbra, Carlos E. Pereira Nunes, Pedro J. Bergamo, João M. R. B. V. Aguiar and Leandro Freitas
Plants 2026, 15(1), 154; https://doi.org/10.3390/plants15010154 - 4 Jan 2026
Viewed by 99
Abstract
Pollination syndromes reflect the convergence of floral traits among plants sharing the same pollinator guild. However, bee-pollinated orchids exhibit striking variation in color and size. This diversity reflects the multiple reward strategies that evolved within the family, each interacting differently with bee sensory [...] Read more.
Pollination syndromes reflect the convergence of floral traits among plants sharing the same pollinator guild. However, bee-pollinated orchids exhibit striking variation in color and size. This diversity reflects the multiple reward strategies that evolved within the family, each interacting differently with bee sensory biases. Here, we tested whether the complex floral visual displays of orchids differ in signal identity and intensity among reward systems. We also considered intrafloral modularity, measured as the color differentiation among flower parts, and color–size integration. For this, we measured and modeled floral morphometric and reflectance data from sepals, petals, lip tips, and lip bases under bee vision from 95 tropical Epidendroid species to compare chromatic and achromatic contrasts, spectral purity, and mean reflectance across wavebands, plus flower and display size, among reward systems. Reward types included 19 food-deceptive, 8 nectar-offering, 10 oil-offering, 11 fragrance-offering, and 47 orchid species of unknown reward strategy. Principal component analyses on 34 color and 9 size variables summarized major gradients of visual trait variation: first component (19.1%) represented overall green-red reflectance and achromatic contrasts, whereas the second (16.5%) captured chromatic contrast–size covariation. Reward systems differed mostly in signal identity rather than signal intensity. Flower chromatic contrasts presented strong integration with flower size, while achromatic contrasts were negatively associated with display size. While deceptive and nectar-offering orchids tend toward larger solitary flowers with bluer and spectrally purer displays, oil- and fragrance-offering orchids tend toward smaller, brownish, or yellow to green flowers, with larger inflorescences. Rewardless orchids presented more achromatically conspicuous signals than rewarding orchids, but smaller displays. Orchid species clustered by reward both in PCA spaces and in bee hexagon color space. Deceptive orchids were typically associated with UV + White colors, oil orchids with UV + Yellow lip tips, and fragrance orchids with UV-Black lip bases and UV-Green lip tips. Together, these results indicate that orchid reward systems promote qualitative rather than quantitative differentiation in visual signals, integrating display color and size. These long-evolved distinct signals potentially enable foraging bees to discriminate among resource types within the community floral market. Our results demonstrate that color and flower display size are important predictors of reward strategy, likely used by foraging bees for phenotype-reward associations, thus mediating the evolution of floral signals. Full article
(This article belongs to the Special Issue Interaction Between Flowers and Pollinators)
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15 pages, 624 KB  
Review
The Use of Red Mud in Agricultural Soil Cadmium Remediation: A Critical Review
by Weiwei Sun, Wenyi Xie, Lei Wang, Lei Wang, Yang Gong, Xuwei Li, Chi Wang, Jiali Yan and Xiaochen Lin
Toxics 2026, 14(1), 16; https://doi.org/10.3390/toxics14010016 - 23 Dec 2025
Viewed by 282
Abstract
Red mud is a highly alkaline solid waste with an annual emission of over 200 million tons, which requires large-scale utilization methods. Soil Cd remediation is a global concern, due to its high toxicity and strong mobility. Given red mud’s potential for soil [...] Read more.
Red mud is a highly alkaline solid waste with an annual emission of over 200 million tons, which requires large-scale utilization methods. Soil Cd remediation is a global concern, due to its high toxicity and strong mobility. Given red mud’s potential for soil Cd remediation, this study reviews its basic characteristics, the mechanisms of soil Cd immobilization by red mud, and the use of red mud-based passivators for agricultural soil Cd remediation. In general, red mud regulates soil pH, thus increasing the soil’s Cd adsorption capacity; provides abundant surface active sites for adsorption and complexation with soil Cd; introduces cations to immobilize Cd via ion exchange; and enriches Cd-resistant microbe species to reduce soil Cd toxicity. Furthermore, the potential environmental risks and suggestions on red mud application are discussed. Further research should focus on improving the remediation effectiveness of red mud on cadmium-contaminated agricultural soil, demonstrating its long-term efficacy and economic costs, and proposing practical technical models and standards for application. Full article
(This article belongs to the Section Toxicity Reduction and Environmental Remediation)
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22 pages, 1814 KB  
Review
Microalgae and Macroalgae as Advanced Sources of Tyrosinase Inhibitors
by Joanna Harasym and Katarzyna Hałdys
Molecules 2026, 31(1), 20; https://doi.org/10.3390/molecules31010020 - 20 Dec 2025
Viewed by 437
Abstract
Tyrosinase (EC 1.14.18.1) is the primary enzyme responsible for melanogenesis in mammals and enzymatic browning in food, creating a high demand for potent, safe inhibitors of this enzyme in the cosmetic, medical, and agricultural sectors. Conventional synthetic inhibitors often face limitations concerning their [...] Read more.
Tyrosinase (EC 1.14.18.1) is the primary enzyme responsible for melanogenesis in mammals and enzymatic browning in food, creating a high demand for potent, safe inhibitors of this enzyme in the cosmetic, medical, and agricultural sectors. Conventional synthetic inhibitors often face limitations concerning their cytotoxicity and stability, necessitating the exploration of marine natural products (MNPs). Marine algae, comprising macroalgae (seaweeds) and microalgae (including cyanobacteria), represent an underexploited source of structurally diverse bioactives. Macroalgae, particularly brown species, yield complex phlorotannins, such as the non-competitive oligomer dieckol, which exhibits an IC50 of 2.16 µg/mL. Conversely, microalgae deliver high-potency, low-molecular-weight compounds, notably the synthesizable scytonemin monomer (ScyM) with an IC50 of 4.90 µM—significantly stronger than kojic acid. Mechanistic analysis, supported by molecular docking, reveals diverse modes of action, from the two-step slow binding of complex phlorotannins to the highly specific competitive binding of red algal bromophenols. Translational success requires the consistent application of green extraction techniques, such as Natural Deep Eutectic Solvents (NADESs), and advanced delivery systems, like Nanostructured Lipid Carriers (NLCs), to ensure the stability and bioavailability of these compounds for future cosmeceutical and medical applications. Full article
(This article belongs to the Special Issue 30th Anniversary of Molecules—Recent Advances in Food Chemistry)
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17 pages, 5051 KB  
Article
A New Species of Boesenbergia Kuntze (Zingiberaceae) from Myanmar, with Notes on Diversity, Utilization, Conservation, and Horticultural Potential
by Piyaporn Saensouk, Surapon Saensouk, Thawatphong Boonma, Nyi Nyi Htway, Win Paing Oo, Min Khant Naing and Auemporn Junsongduang
Taxonomy 2025, 5(4), 70; https://doi.org/10.3390/taxonomy5040070 - 17 Dec 2025
Viewed by 426
Abstract
Boesenbergia burmanica Boonma, P.Saensouk & Saensouk, a new species from Naypyidaw Union Territory, Myanmar, is described based on morphological examination of specimens collected during field surveys in 2024–2025. The genus Boesenbergia is taxonomically complex, and ongoing botanical exploration in Southeast Asia continues to [...] Read more.
Boesenbergia burmanica Boonma, P.Saensouk & Saensouk, a new species from Naypyidaw Union Territory, Myanmar, is described based on morphological examination of specimens collected during field surveys in 2024–2025. The genus Boesenbergia is taxonomically complex, and ongoing botanical exploration in Southeast Asia continues to reveal undescribed taxa. Comparative analyses of living plants, herbarium materials, and published descriptions were conducted to determine diagnostic features. Boesenbergia burmanica is closely related to B. meghalayensis Aishwarya & M.Sabu but differs in having ovoid, branched rhizomes, a pubescent lamina on both surfaces, and an oblanceolate labellum with bright red markings. It grows in shady, sandy-loam habitats at 140–145 m elevation and flowers from August to September, producing inflorescences with nine to ten flowers. Species of Boesenbergia are traditionally used in Myanmar and neighboring regions as medicinal and ornamental plants, and notes on local ethnobotanical knowledge are provided. The new species exhibits high ornamental potential due to its compact clumping habit and attractive floral coloration. Cultivation guidelines are provided to support ex situ conservation and horticultural development for sustainable use. This discovery increases the number of Boesenbergia species recorded in Myanmar to 14 and highlights the importance of continued field-based taxonomic and conservation research on regional Zingiberaceae diversity. Full article
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17 pages, 1020 KB  
Article
Comparative Antimicrobial and Oxidative Damage of Indocyanine Green, Methylene Blue, and Curcumin on Dual-Species Biofilms of Enterococcus faecalis and Candida albicans
by Nayara Gabriely Dourado, Gladiston William Lobo Rodrigues, Laura Cesário Oliveira, Rayara Nogueira de Freitas, Larissa Victorino Sampaio, Yuri Gabriel Chamorro de Moraes, Maria Rita de Lúcio Lino Alves, Gabriele Fernandes Baliero, Lucas Guilherme Leite da Silva, Antonio Hernandes Chaves-Neto, Luciano Tavares Angelo Cintra, Renato de Toledo Leonardo and Rogério Castilho Jacinto
Int. J. Mol. Sci. 2025, 26(24), 12002; https://doi.org/10.3390/ijms262412002 - 13 Dec 2025
Viewed by 258
Abstract
Failure of the endodontic treatment is often associated with persistent polymicrobial biofilms, particularly those involving Enterococcus faecalis (E. faecalis) and Candida albicans (C. albicans), which display synergistic pathogenicity and resistance to standard disinfection methods. This in vitro study compared the [...] Read more.
Failure of the endodontic treatment is often associated with persistent polymicrobial biofilms, particularly those involving Enterococcus faecalis (E. faecalis) and Candida albicans (C. albicans), which display synergistic pathogenicity and resistance to standard disinfection methods. This in vitro study compared the antimicrobial activity and oxidative damage induced by indocyanine green (ICG)–mediated laser ablation (LA) with that produced by antimicrobial photodynamic therapy (aPDT) using methylene blue (MB) or curcumin (CUR) in root canals infected with dual-species biofilms. The samples were divided into five experimental groups (n = 20): Group A—Methylene Blue + Red Laser (RL), Group B—Curcumin + Blue LED (BL), Group C—Indocyanine Green + Infrared Diode Laser (DL), Group D—saline solution (Negative Control—NC), Group E—2.5% sodium hypochlorite (Positive Control—PC). One hundred treated bovine incisors (20 per group) were analyzed for microbial viability (colony-forming unit (CFU/mL)), the metabolic functionality of biofilms was assessed through the 2,3-bis(2-methoxy-4-nitro-5-sulfophenyl)-5-[(phenylamino)carbonyl]-2H-tetrazolium hydroxide (XTT) based reduction method, and oxidative stress markers, including Thiobarbituric Acid Reactive Substances (TBARS), protein carbonyl content, total oxidant capacity (TOC), and total protein levels. All experimental treatments significantly reduced microbial load compared to the negative control (p < 0.05), with ICG achieving the greatest reduction. ICG also induced the highest levels of oxidative stress across all parameters (p < 0.05). These findings suggest that LA with ICG is more effective than aPDT with MB or CUR, achieving disinfection outcomes comparable to those of 2.5% sodium hypochlorite, and warrant further investigation in complex clinical models. Full article
(This article belongs to the Section Molecular Nanoscience)
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26 pages, 7099 KB  
Article
In-Depth Multi-Approach Analysis of WGS Metagenomics Data Reveals Signatures Potentially Explaining Features in Periodontitis Stage Severity
by Ignat V. Sonets, Iulia S. Galeeva, Danil V. Krivonos, Alexander V. Pavlenko, Andrey V. Vvedenskiy, Anna A. Ahmetzyanova, Karen A. Mikaelyan, Elena N. Ilina, Oleg O. Yanushevich, Zalina E. Revazova, Elena I. Vibornaya, Galina S. Runova, Vasiliy V. Aliamovskii, Irina S. Bobr, Madina O. Tsargasova, Ekaterina I. Kalinnikova and Vadim M. Govorun
Dent. J. 2025, 13(12), 590; https://doi.org/10.3390/dj13120590 - 8 Dec 2025
Viewed by 364
Abstract
Background: Periodontitis is a chronic inflammatory disease mostly associated with Porphyromonas gingivalis infection and characterized by progressive destruction of the supporting structures of the tooth, including the gingiva, periodontal ligament and alveolar bone. However, the impact of other members of the periodontal [...] Read more.
Background: Periodontitis is a chronic inflammatory disease mostly associated with Porphyromonas gingivalis infection and characterized by progressive destruction of the supporting structures of the tooth, including the gingiva, periodontal ligament and alveolar bone. However, the impact of other members of the periodontal microbiome on stage of the severity of the periodontitis remains largely uncharacterized. Methods: This exploratory study employs whole-genome shotgun (WGS) metagenomics to characterize the periodontal microbiome in patients suffering from mild and severe periodontitis, aiming to identify microbial signatures linked to disease severity via analysis of taxonomic composition, predicted metabolic pathways and metagenome-assembled genomes (MAGs). After initial selection, 28 adult patients with a computer tomography (CT)-confirmed diagnosis of mild and severe stage of periodontitis from 2 clinics were included in the research project. Results: Taxonomic analysis confirms the presence of various commensal and pathogenic bacteria detectable at the species level, especially belonging to so-called “red, orange and green periodontal complexes”—P. gingivalis, T. forsythia, C. rectus, and Capnocytophaga spp. that may contribute to disease heterogeneity. The conducted investigation suggests that non-microbial factors such as cardiovascular diseases and antibiotic usage in the last 6 months prior to the hospital admission could explain variance of disease progression and impact on severity. Analysis of microbial functional composition revealed metabolic traits showing positive correlations with severe stage of periodontitis. Robust network analysis suggested interactions between pathogenic bacteria of the red complex and other members of the periodontal microbiome. Conclusions: These findings underscore the multifactorial nature of periodontitis pathogenesis, highlighting the need for integrated approaches combining microbial, host, and environmental data to unravel drivers of disease progression. The study provides a foundation for future large-scale investigations into personalized diagnostic or therapeutic strategies. Full article
(This article belongs to the Special Issue Oral Microbiology and Related Research)
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12 pages, 513 KB  
Article
Fluorescence as a Quantitative Indicator of Cariogenic Bacteria During Chemo-Mechanical Caries Excavation with BRIX 3000 in Primary Teeth
by Zornitsa Lazarova, Raina Gergova and Nadezhda Mitova
J. Funct. Biomater. 2025, 16(12), 453; https://doi.org/10.3390/jfb16120453 - 6 Dec 2025
Viewed by 411
Abstract
Minimally invasive treatment is increasingly successful in managing carious lesions in primary teeth, owing to the regenerative capacity of the dental pulp and the possibility to influence the pulp–dentin complex. Chemo-mechanical caries excavation (CME) with Brix 3000, a papain-based enzymatic agent, allows selective [...] Read more.
Minimally invasive treatment is increasingly successful in managing carious lesions in primary teeth, owing to the regenerative capacity of the dental pulp and the possibility to influence the pulp–dentin complex. Chemo-mechanical caries excavation (CME) with Brix 3000, a papain-based enzymatic agent, allows selective removal of infected dentin while preserving affected dentin for potential remineralization. Fluorescence-aided caries excavation (FACE) enables visualization of porphyrins produced by cariogenic microorganisms, guiding selective dentin removal. In this study, 42 children aged 4–7 years with ICDAS II code 05–06 lesions in primary molars were treated, and the correlation between fluorescence intensity and cariogenic microbial load was evaluated. CME was performed using Brix 3000, and residual dentin was categorized by fluorescence as red, red with pale-pink areas, pale-pink, or non-fluorescent. Microbiological samples were collected pre- and post-excavation, cultured under standardized laboratory conditions, and quantitatively analyzed. Results showed that higher fluorescence intensity corresponded to increased presence of S. mutans (ρ = 0.945, p < 0.001), while other species were present in lower quantities. CME with Brix 3000 significantly reduced microbial load, and fluorescence reliably indicated areas requiring removal. These findings demonstrate that combining FACE with Brix 3000 allows precise, minimally invasive caries removal in primary teeth, providing an objective method to guide tissue-preserving excavation while effectively controlling cariogenic microorganisms. Full article
(This article belongs to the Special Issue Biomaterials for Management of Dental Caries and Periodontal Disease)
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17 pages, 1283 KB  
Article
Biological Activity of Silver(I)-1,10-Phenanthroline Complexes Against Fonsecaea pedrosoi: In Silico Predictions, In Vitro Macrophage Interactions and In Vivo Efficacy in Galleria mellonella
by Ingrid S. Sousa, Lucas Giovanini, Carolline M. A. Lorentino, Iuri C. Barcellos, Malachy McCann, Michael Devereux, André L. S. Santos and Lucimar F. Kneipp
Pharmaceuticals 2025, 18(12), 1819; https://doi.org/10.3390/ph18121819 - 28 Nov 2025
Viewed by 351
Abstract
Background/Objectives: Fonsecaea pedrosoi causes chromoblastomycosis, a neglected chronic subcutaneous mycosis that remains difficult to treat. In this study, we evaluated the toxicity and the antifungal effect of [Ag(1,10-phenanthroline)2]ClO4 (Ag-phen) and [Ag2(3,6,9-trioxaundecanedioate)(1,10-phenanthroline)4]·EtOH (Ag-tdda-phen) against F. pedrosoi [...] Read more.
Background/Objectives: Fonsecaea pedrosoi causes chromoblastomycosis, a neglected chronic subcutaneous mycosis that remains difficult to treat. In this study, we evaluated the toxicity and the antifungal effect of [Ag(1,10-phenanthroline)2]ClO4 (Ag-phen) and [Ag2(3,6,9-trioxaundecanedioate)(1,10-phenanthroline)4]·EtOH (Ag-tdda-phen) against F. pedrosoi using in silico, in vitro and in vivo approaches. Methods: Pharmacokinetic and toxicological parameters were predicted using ADMETlab 2.0. The toxicity of the complexes was assessed using sheep red blood cells, RAW 264.7 macrophage cells, and larvae of Tenebrio molitor and Galleria mellonella. The effects of these complexes on macrophage adhesion capacity and reactive oxygen species (ROS) production were also investigated using Giemsa staining and dichlorofluorescein diacetate, respectively. In addition, their impact on the survival of G. mellonella larvae infected with conidia was evaluated. Results: Overall, computational analyses predicted favorable tolerability profiles for both complexes. In vitro assays with red blood cells and macrophages demonstrated that they exhibited selectivity indexes >10 against F. pedrosoi. These findings were corroborated by in vivo experiments in which both complexes were injected into insect larvae; the complexes demonstrating good tolerability at concentrations of up to 500 mg/L. Macrophage infection assays revealed that Ag-tdda-phen and Ag-phen markedly reduced the number of intracellular conidia. These effects appear to be associated with oxidative stress, as macrophage production of ROS significantly increased following treatment with the complexes. Furthermore, Ag-tdda-phen improved the survival of G. mellonella larvae infected with F. pedrosoi, demonstrating a protective effect. Conclusions: Collectively, our findings support the notion that silver(I)-phen derivatives represent promising candidates for the development of therapeutic options against CBM infections caused by F. pedrosoi. Full article
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19 pages, 2350 KB  
Article
A Study on the Assembly Mechanisms of Shrub Communities in Coniferous and Broadleaved Forests—A Case Study of Jiangxi, China
by Yuxi Xue, Xiaoyue Guo, Wei Huang, Xiaohui Zhang, Yuxin Zhang, Yongxin Zhong, Xia Lin, Qi Zhang, Qitao Su and Yian Xiao
Biology 2025, 14(12), 1683; https://doi.org/10.3390/biology14121683 - 26 Nov 2025
Viewed by 378
Abstract
The ecological strategies of understory shrubs are critical for maintaining the structure and function of forest understory vegetation. Understanding the assembly mechanisms of these shrub communities is a central issue in modern ecology. To address this, our study was conducted in the typical [...] Read more.
The ecological strategies of understory shrubs are critical for maintaining the structure and function of forest understory vegetation. Understanding the assembly mechanisms of these shrub communities is a central issue in modern ecology. To address this, our study was conducted in the typical red soil regions of Jiangxi, China, focusing on secondary forests (including both broadleaved and coniferous types) of similar stand age. We aimed to assess the effects of various environmental factors—such as soil pH, total nitrogen content, bulk density, and understory temperature—along with tree-layer characteristics—including canopy closure, tree species richness, and diameter at breast height (DBH)—on the species composition, functional traits, and phylogenetic structure of the shrub layer. Results showed: One-way ANOVA revealed significant differences in functional traits between the two forest types. Specifically, leaf thickness, specific leaf area, and chlorophyll content were significantly higher in the coniferous forest, whereas leaf dry matter content was significantly lower compared to the broadleaved forest (p < 0.05). These results suggest that understory shrubs in the coniferous forest primarily adopt a resource-conservative strategy, while those in the broadleaved forest exhibit a resource-acquisitive strategy. Phylogenetic analysis further revealed that the phylogenetic diversity (PD) of coniferous forests was significantly lower than that of broadleaved forests (p < 0.05). The phylogenetic structure in coniferous forests showed a more clustered pattern (NTI > 0, NRI > 0), suggesting stronger environmental filtering. Diversity index analysis showed that the Chao1 index indicated a richer potential species pool in broadleaved forests (p < 0.05), while species distribution was more even in coniferous forests (p < 0.05). Random Forest model analysis identified the diameter at breast height (DBH) of trees as the most critical negative driver, while soil pH was the primary positive driver. Redundancy Analysis (RDA) confirmed that the community structure in coniferous forests was mainly driven by biotic competition pressure represented by DBH, whereas the structure in broadleaved forests was more closely associated with abiotic factors like soil total nitrogen and pH (R2 = 0.29, p < 0.05). These environmental drivers, through strong environmental filtering, collectively resulted in a phylogenetically clustered pattern of shrub communities in both forest types. This study demonstrates that the assembly of understory shrub communities is a complex, multi-level process co-regulated by multiple factors, shaped by both the biotic pressure from the overstory structure and abiotic filtering from the soil environment. This finding deepens our understanding of the rules governing community assembly in forest ecosystems. Full article
(This article belongs to the Section Ecology)
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15 pages, 2248 KB  
Article
Naphthenic Acid-Induced ROS Emissions by Rainbow Trout Mitochondria
by Zahra Kalvani, Pius Tetteh, Collins Kamunde, Don Stevens and Michael R. van den Heuvel
Toxics 2025, 13(12), 1015; https://doi.org/10.3390/toxics13121015 - 24 Nov 2025
Viewed by 352
Abstract
Naphthenic acid fraction compounds (NAFC) are prevalent in petrochemical wastewater, including from oil sands processing, and induce reactive oxygen species (ROS) emissions in isolated mitochondria. The purpose of this study was to verify if a primary carboxylic acid, the moderately hydrophobic NAFC 3,5-dimethyladamantane-1-acetic [...] Read more.
Naphthenic acid fraction compounds (NAFC) are prevalent in petrochemical wastewater, including from oil sands processing, and induce reactive oxygen species (ROS) emissions in isolated mitochondria. The purpose of this study was to verify if a primary carboxylic acid, the moderately hydrophobic NAFC 3,5-dimethyladamantane-1-acetic acid, would cause the mitochondrial ROS (hydrogen peroxide; H2O2) production and affect its consumption by mitochondria in multiple bioenergetic states. Intact mitochondria isolated from rainbow trout (Oncorhynchus mykiss) liver were exposed to commercially available 3,5-dimethyladamantane-1-acetic acid. The emission of ROS during States 3 and 4 respiration was quantified using fluorometry with an Oroboros fluorespirometer. Subsequently, select ROS emission sites in the mitochondrial complexes were isolated using inhibitors, and the ROS emission of each site was measured using the Amplex UltraRed-horseradish peroxidase (AUR-HRP) system. The compound 3,5-dimethyladamantane-1-acetic acid was equally potent in causing ROS emission in State 3 and State 4 ROS sites. The baseline (no NAFC) proportion of ROS emission by site was IIF > IQ > IIIQo > IF. The 3,5-dimethyladamantane-1-acetic acid compound increased ROS emission in a dose-dependent manner at IIF with an EC50 of 0.2 mM, which was not significantly different than the State 3 and 4 Oroboros response. In contrast, there was no consistent concentration-effect response at the other three ROS sites (IQ, IIIQo, and IF). Malonate, an inhibitor of succinate dehydrogenase, eliminated ROS production in Oroboros experiments. These findings identify site IIF as the predominant source of NAFC-stimulated ROS and provide mechanistic insight into how adamantane-type NAFCs impair mitochondrial redox balance in fishes. Full article
(This article belongs to the Section Ecotoxicology)
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17 pages, 5990 KB  
Article
Brettanomyces bruxellensis Strains Display Variable Resistance to Cycloheximide: Consequences on the Monitoring of Wine
by Laura Olazabal, Quentin Dapzol, Warren Albertin, Cécile Miot-Sertier, Magali Deleris-Bou, Anita Boisramé and Marguerite Dols-Lafargue
Microorganisms 2025, 13(11), 2597; https://doi.org/10.3390/microorganisms13112597 - 14 Nov 2025
Viewed by 804
Abstract
Brettanomyces bruxellensis is a yeast that causes spoilage in red wines due to its ability to produce volatile phenols, compounds associated with major sensory defects. Specific monitoring of low populations of this species in complex ecosystems such as wine during fermentation or aging [...] Read more.
Brettanomyces bruxellensis is a yeast that causes spoilage in red wines due to its ability to produce volatile phenols, compounds associated with major sensory defects. Specific monitoring of low populations of this species in complex ecosystems such as wine during fermentation or aging often relies on plating onto selective media supplemented with cycloheximide. However, the variability of B. bruxellensis sensitivity to this antibiotic needs to be better characterized. A collection of 175 B. bruxellensis strains was, thus, grown on YPD medium supplemented with increasing concentrations of cycloheximide (0 to 0.5 g.L−1), and yeast development was monitored for 20 days by image analysis. This study revealed significant inter-strain variability, with some strains showing very late or even no growth at high cycloheximide concentrations. The cycloheximide inhibitory effect was also dose- and population-dependent. In addition, colony size was frequently reduced at high doses. Additional tests were conducted on a subset of strains grown in wines with either low pH or high alcohol content or containing sulfur dioxide and then plated in the presence of increasing concentrations of cycloheximide. This revealed a cumulative effect of wine and cycloheximide stresses that resulted in an even higher delay in yeast detection. The results confirm the huge phenotypic diversity of the species and highlight the need to adapt the plates’ incubation time, particularly when the selectivity and the doses of cycloheximide needed are high (samples taken in pre-fermentation phases or during fermentation) or in case of stressful wine analysis, to minimize the risk of false negatives. Full article
(This article belongs to the Special Issue Wine Fermentation Microorganisms)
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25 pages, 4735 KB  
Article
Role of Nitric Oxide and Nrf2 to Counteract Vascular Endothelial Dysfunction Induced by Periodontal Pathogens Using HUVECs
by Gunaraj Dhungana, Chethan Sampath, Vineeta Sharma, Olga Korolkova and Pandu R. Gangula
Cells 2025, 14(22), 1777; https://doi.org/10.3390/cells14221777 - 12 Nov 2025
Viewed by 1087
Abstract
Background: Polybacterial infections associated with periodontitis are increasingly linked to systemic vascular complications, yet the underlying endothelial mechanisms remain unclear. This study investigated how a consortium of red-complex bacteria (Porphyromonas gingivalis, Tannerella forsythia, Treponema denticola) and orange complex ( [...] Read more.
Background: Polybacterial infections associated with periodontitis are increasingly linked to systemic vascular complications, yet the underlying endothelial mechanisms remain unclear. This study investigated how a consortium of red-complex bacteria (Porphyromonas gingivalis, Tannerella forsythia, Treponema denticola) and orange complex (Fusobacterium nucleatum) affects oxidative stress, inflammation, metabolism, and apoptosis in endothelial cells, and whether L-Sepiapterin [a tetrahydrobiopterin (BH4) precursor via salvage pathway] or bardoxolone methyl (CDDO-Me) [a potent nuclear factor erythroid 2-related factor 2 (Nrf2) activator)] could provide protection. Methods: Human umbilical vein endothelial cells (HUVECs) were infected for 12–72 h and treated with L-Sepiapterin or CDDO-Me. Nitric oxide (NO), BH4, and reactive oxygen species (ROS) levels were quantified, and mRNA expression of key genes regulating nitric oxide synthase activity, antioxidant defense, inflammation (TLR4/NF-κB, cytokines), metabolism (PI3K-AKT-PEA-15), and apoptosis (FAS–caspase pathway) was analyzed. Results: Infection markedly reduced NO and BH4, elevated ROS, activated TLR4/NF-κB and proinflammatory cytokines, disrupted PI3K/AKT signaling, and triggered endothelial apoptosis. Treatments with L-Sepiapterin and CDDO-Me restored NO bioavailability, reduced oxidative and inflammatory responses, normalized metabolic gene expression, and attenuated apoptosis, with CDDO-Me showing more promising effects. This study provides the mechanistic insight linking periodontal polybacterial infection to endothelial dysfunction and metabolic impairment such as diabetes, suggesting that redox-modulating strategies such as L-Sepiapterin and CDDO-Me may help prevent vascular damage associated with periodontal disease. Full article
(This article belongs to the Special Issue Redox Regulation by Nrf2 in Health and Disease)
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19 pages, 1058 KB  
Review
Effects of Light on Adventitious Rooting In Vitro
by Rosario Muleo, Mohamed I. Hassan, Alessandra Pellegrino and Valeria Cavallaro
Agronomy 2025, 15(11), 2597; https://doi.org/10.3390/agronomy15112597 - 11 Nov 2025
Viewed by 990
Abstract
Vegetative propagation through stem cuttings and in vitro microcuttings enables large-scale multiplication of superior genotypes in various crop species. This approach is widely used both to propagate and select trees with desirable genetic traits as well as to preserve a significant proportion of [...] Read more.
Vegetative propagation through stem cuttings and in vitro microcuttings enables large-scale multiplication of superior genotypes in various crop species. This approach is widely used both to propagate and select trees with desirable genetic traits as well as to preserve a significant proportion of genetic diversity. However, successful plant regeneration using this technique requires the development of an adventitious root (AR) system at the base of cuttings or microcuttings. Reduced root formation and functionality strongly limit the application of vegetative propagation, both in vivo and in vitro. The complex process of AR development is greatly influenced by the physiological state of the donor plant, as well as by genetic and environmental factors. Among the environmental factors involved, light quality and intensity have been mainly studied empirically. This review summarizes advances in understanding how light quantity and quality influence in vitro rooting of micropropagated plants, emphasizing species-specific responses. Furthermore, medium components such as sugars and growth regulators, which interact significantly with light, are also considered. Based on existing studies across different plant species, particularly in the absence of growth regulators, the most effective spectrum for root induction is a temporary enrichment of red light, either alone or combined with small amounts of blue or green light. An efficient root growth occurs when the explants are re-exposed to white light, typically at intensities of 40–50 μmol m−2 s−1. After root development, exposing the microcuttings to higher intensities could help acclimatization. Finally, considering its capacity to precisely regulate light quality and intensity, LED technology offers a valuable tool for optimizing the rooting process and reducing production costs. Full article
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