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Search Results (142)

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Keywords = plant-soil feedback

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13 pages, 2839 KB  
Article
Genotype-Dependent Soil Legacy of Woodland Strawberry (Fragaria vesca L.) on Plant Growth and Herbivore Resistance
by Jiayi Liu, Anne Muola, Peter Anderson, Tuuli-Marjaana Koski, Minggang Wang and Johan A. Stenberg
Plants 2026, 15(10), 1537; https://doi.org/10.3390/plants15101537 - 18 May 2026
Viewed by 211
Abstract
Plant genotypes can vary in multiple functional traits due to adaptation to heterogenous environments. However, whether such variation can extrapolate to effects on soils and further on performance of subsequent plants, thus generating a genotypic variation in soil legacy, remains unclear. In this [...] Read more.
Plant genotypes can vary in multiple functional traits due to adaptation to heterogenous environments. However, whether such variation can extrapolate to effects on soils and further on performance of subsequent plants, thus generating a genotypic variation in soil legacy, remains unclear. In this study, we studied how plant genotypic variation impacts soil legacy when exposed to aboveground insect herbivores. We used 11 wild genotypes of woodland strawberry (Fragaria vesca L.) experimentally exposed to leaf beetles (Galerucella tenella) to condition live soil. We then replaced the conditioning plants with naïve plants to examine soil legacy effects on growth and resistance on the subsequent plant genotype (referred to as the focal genotype) against the generalist herbivore Spodoptera littoralis. This allowed us to test the extent to which plant genotypic variation in soil legacy is altered by aboveground herbivory. We found an overall positive soil legacy effect of woodland strawberry, indicated by 69.9% higher belowground biomass of the subsequent focal genotype grown in conditioned soil compared to in unconditioned soil. We also observed a genotype-dependent soil legacy effect on performance of S. littoralis indicated as relative growth rates reduced by 37.9% on the subsequent focal genotype in soil conditioned by the focal genotype itself compared to by other genotypes, though the legacy effect was cancelled out when conditioning genotypes were exposed to G. tenella herbivory. A genotypic variation was further detected in soil legacy on the efficiency of conversion of ingested food by S. littoralis caterpillars feeding on the focal genotype. However, the genotypic variation was only present when the focal genotype was excluded from the conditioning genotypes at the exposure of G. tenella herbivory. Collectively, our study shows a conditional plant genotype-dependent soil legacy effect on herbivore resistance (measured as herbivore performance) rather than on plant growth, and the magnitude of the legacy effects depends on both the identity of the conditioning genotypes and the measures of the herbivore resistance. The findings of this study provide new insights into how plant genotypes or herbivory affects soil feedback on plant growth and herbivore resistance. Full article
(This article belongs to the Collection Feature Papers in Plant‒Soil Interactions)
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17 pages, 2317 KB  
Review
Plant Invasion Driven by Heavy Metals and Microplastics: From Mechanisms to Agroecological Management Implications
by Zishuo Wang, Chong Zheng, Kai Shi, Leyi Wang, Yanqun Dou and Hua Shao
Agriculture 2026, 16(10), 1087; https://doi.org/10.3390/agriculture16101087 - 15 May 2026
Viewed by 232
Abstract
Biological invasions and environmental pollution are the two primary threats facing contemporary agricultural ecosystems, and their interaction exacerbates agroecological risks and undermines agricultural sustainability. This study was conducted to systematically elucidate how heavy metals (HMs) and microplastics (MPs) alter the relative advantages of [...] Read more.
Biological invasions and environmental pollution are the two primary threats facing contemporary agricultural ecosystems, and their interaction exacerbates agroecological risks and undermines agricultural sustainability. This study was conducted to systematically elucidate how heavy metals (HMs) and microplastics (MPs) alter the relative advantages of invasive plants in ecosystems, clarify the ecological processes involved, and propose recommendations for the protection of farmland ecosystems. The main conclusions are as follows: (1) Pollution acts as an environmental filter that negatively affects native species, including crops, while creating relative advantages for invasive plants with high tolerance and adaptive physiological mechanisms. (2) Pollution stress enables invasive plants to gain a competitive advantage over native plants through highly plastic resource allocation strategies, prioritization of growth, and more powerful allelopathic effects. (3) Pollution systematically amplifies the advantage of invasive plants by altering the strength of plant–soil feedback (PSF) and driving the restructuring of rhizosphere microbial communities. (4) Invasive plants can be used to produce biochar, which can then be applied in farmland ecosystems for the control of invasive plants and remediation of soil pollution. The framework constructed in this study indicates that heavy metal and microplastic pollution may enhance the invasion of alien plants, posing a serious threat to agroecosystem health and food security. However, using invasive plants as feedstock to produce biochar may offer a solution to the intertwined challenges of plant invasion and environmental pollution. Full article
(This article belongs to the Section Ecosystem, Environment and Climate Change in Agriculture)
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29 pages, 7346 KB  
Article
Design and Simulation Analysis of a Bionic Weeding and Plant Protection Integrated Vehicle for Sesame
by Dongdong Gu, Jiahan Zhang, Yuhan Wang, Xiaomei Zhang, Xiao Xiao, Jie Yang and Huan Song
AgriEngineering 2026, 8(5), 178; https://doi.org/10.3390/agriengineering8050178 - 3 May 2026
Viewed by 397
Abstract
To address the poor mechanical adaptability of conventional equipment to 40 cm narrow-row sesame cultivation and the high weeding resistance and energy consumption of traditional weeding tools, this study developed an integrated bionic weeding and plant protection vehicle. The vehicle features a modular [...] Read more.
To address the poor mechanical adaptability of conventional equipment to 40 cm narrow-row sesame cultivation and the high weeding resistance and energy consumption of traditional weeding tools, this study developed an integrated bionic weeding and plant protection vehicle. The vehicle features a modular structure capable of three-row weeding and four-row plant protection, coupled with an extended-range hybrid powertrain. Its parallel linkage design enables terrain adaptation, ensuring consistent weeding depth of 3–6 cm and stable spraying height. Combined with an adjustable spraying width and a “detection–feedback–adjustment” mechanism to prevent plant collisions, the vehicle is fully compatible with the agronomic requirements of narrow-row cultivation. Inspired by mole cricket forelegs, the vehicle’s bionic weeding wheel blade model incorporates quantified biological features: quadratically fitted claw toe contours (R2 > 0.97), a toe base height-to-width ratio of 1:2, and a toe groove radius-to-toe height ratio of 1:1. This design achieves a reliable biological-to-engineering translation. EDEM-based Discrete Element Method (DEM) simulations confirm that the bionic wheel outperforms conventional designs: the average torque is 17.4% lower (7.75 vs. 9.38 N·m), the soil disturbance rate is 8.2 percentage points higher (95.2% vs. 87.0%), and soil particle motion is more ordered (average velocity: 0.52 vs. 0.58 m/s), effectively reducing energy waste and improving weeding efficiency. Full article
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22 pages, 8540 KB  
Article
Strand-Specific RNA-Seq Analysis of the Chryseobacterium sp. HGX-24 Transcriptome in Response to Cadmium Stress
by Qiyu Gao, Zixia Xu, Lin Xu, Wanting Wang and Na Wang
Microorganisms 2026, 14(5), 957; https://doi.org/10.3390/microorganisms14050957 - 23 Apr 2026
Viewed by 292
Abstract
With the rapid progression of global industrialization and urbanization, heavy metal contamination has emerged as a major global threat, especially cadmium pollution. Consequently, optimizing remediation measures has become a pivotal means to solve cadmium contamination. Compared to traditional physical and chemical remediation methods, [...] Read more.
With the rapid progression of global industrialization and urbanization, heavy metal contamination has emerged as a major global threat, especially cadmium pollution. Consequently, optimizing remediation measures has become a pivotal means to solve cadmium contamination. Compared to traditional physical and chemical remediation methods, microbial remediation has great potential in addressing cadmium pollution. In this study, a novel bacterial strain, Chryseobacterium sp. HGX-24, exhibiting high cadmium resistance was successfully isolated and screened from cadmium-contaminated environments. A preliminary discussion of the response mechanisms of this strain under cadmium stress is provided. Additionally, preliminarily explored the synergistic remediation of microbial-plant in cadmium-contaminated soil. Under conditions of high cadmium concentration, cadmium ions were effectively adsorbed by strain HGX-24 through extracellular polymers and functional groups on the cell wall surface, including −COOH, −CONH−, −NH, −OH, and >C=O. Extracellular proteins and polysaccharides were secreted by strain HGX-24 to regulate the adverse effects of heavy-metal cadmium ions on bacterial growth. Furthermore, the expression of genes such as antioxidant defense and ROS scavenging (katG, fabG, ybjT), Fe-S cluster assembly (sufB, sufD), sulfur metabolism (cysAU), amino acid metabolism (hisA, cysD, aspC), phenylacetic acid catabolism (paaC), and ribosomal proteins (rplC, rpsC, rpsL, rplA, rplY, rpmC) was regulated, affecting the synthesis and metabolism of membrane transporters (ABC transporters and efflux RND transporters), antioxidant enzymes (SOD, COT, POD), Fe-S clusters, thioredoxin family proteins, and ribosomal proteins, thereby enhancing resistance to cadmium toxicity. Moreover, strain HGX-24 was found to regulate the activities of redox enzymes in Zea mays L., thereby alleviating oxidative stress and reducing the negative feedback effects of reactive oxygen species in Z. mays. Full article
(This article belongs to the Section Environmental Microbiology)
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20 pages, 27247 KB  
Article
Density-Driven Root Exudate Remodeling Promotes Pathogen Enrichment and Exacerbates Negative Plant–Soil Feedback in Panax notoginseng Monoculture Systems
by Junxing Zhang, Mingyue Wang, Chaocang Chen, Chen Ye, Shijun Zhong, Linmei Deng, Lifen Luo, Haijiao Liu, Shusheng Zhu and Min Yang
Agriculture 2026, 16(9), 930; https://doi.org/10.3390/agriculture16090930 - 23 Apr 2026
Viewed by 361
Abstract
Negative plant–soil feedback (NPSF) drives yield decline in monocropping systems, yet how intraspecific competition modulates NPSF across planting densities remains unclear. We conducted a two-stage plant–soil feedback experiment using five crops (Triticum aestivum L., Zea mays L., Solanum lycopersicum L., Cucumis sativus [...] Read more.
Negative plant–soil feedback (NPSF) drives yield decline in monocropping systems, yet how intraspecific competition modulates NPSF across planting densities remains unclear. We conducted a two-stage plant–soil feedback experiment using five crops (Triticum aestivum L., Zea mays L., Solanum lycopersicum L., Cucumis sativus L., and Panax notoginseng (Burkill) F.H. Chen) with contrasting NPSF intensities under four planting densities (30 × 30 to 8 × 8 cm). Crops with stronger NPSF (P. notoginseng) showed pronounced density-dependent biomass reductions, whereas those with moderate (S. lycopersicum, C. sativus) or low (Z. mays, T. aestivum) NPSF were largely density-insensitive. Given its sensitivity, P. notoginseng was used to explore mechanisms. High-density planting (8 × 8 cm) intensified NPSF, reducing seedling survival by 88.54% and biomass by 56.08% compared with low-density controls (30 × 30 cm). Microbiome profiling showed enrichment of pathogenic Fusarium spp. and depletion of beneficial Humicola spp. under high density. Metabolomic analysis identified linoleic acid and oleamide as key root exudates upregulated under high-density stress, which selectively stimulated Fusarium growth as preferred carbon sources. Collectively, these results reveal a density-dependent feedback in which intensified competition reshapes root exudation, promotes pathogen proliferation, and suppresses beneficial taxa, thereby amplifying NPSF. This provides mechanistic insights into microbially mediated NPSF under density stress and highlights the importance of optimizing planting density to sustain crop productivity. Full article
(This article belongs to the Special Issue Soil Microbiomes for Enhanced Crop Growth and Sustainability)
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27 pages, 6508 KB  
Article
Mechanistic Responses of Summer Maize Growth and Farmland N2O Emissions to Real-Time Water–Fertilizer Synergistic Regulation in the North China Plain
by Jianqin Ma, Yu Ding, Bifeng Cui, Xiuping Hao, Yungang Bai, Jianghui Zhang, Zhenlin Lu and Bangxin Ding
Agronomy 2026, 16(7), 746; https://doi.org/10.3390/agronomy16070746 - 31 Mar 2026
Viewed by 602
Abstract
With the advancement of agricultural modernization, issues related to resource conservation, intensive utilization, and green, low-carbon development have become increasingly prominent. To enhance water and fertilizer use efficiency in Henan Province and promote green, low-carbon, and sustainable agricultural development, field experiments were conducted [...] Read more.
With the advancement of agricultural modernization, issues related to resource conservation, intensive utilization, and green, low-carbon development have become increasingly prominent. To enhance water and fertilizer use efficiency in Henan Province and promote green, low-carbon, and sustainable agricultural development, field experiments were conducted during 2023–2024. The experiment employed a randomized complete block design with three replications. Each plot measured 30 m2 (5 m × 6 m), totaling 36 plots. An IoT-based real-time coordinated water-fertilizer regulation technology, driven by continuous WSH-TDR310S sensor monitoring of soil moisture and nitrogen status with automated threshold-based control logic, was implemented. By transforming the traditional static scheduling approach into a dynamic feedback mechanism driven by real-time sensor data, the synchronization between resource supply and crop demand was achieved. This study aimed to elucidate the response characteristics of summer maize growth dynamics and farmland N2O emissions under the proposed regulation strategy. The experiment included three levels of water deficit (mild, moderate, and severe) and three fertilization levels (low, medium, and high), resulting in a total of nine real-time water–fertilizer coordinated regulation treatments, along with three local border irrigation control treatments. The results showed that under real-time water–fertilizer regulation, plant height, stem diameter, and leaf area index of summer maize exhibited unimodal variation patterns, with the medium irrigation–medium fertilization (B2) treatment performing optimally. Compared with the border-irrigation medium-fertilization control (D2), plant height and stem diameter under the B2 treatment increased significantly. Cumulative farmland N2O emissions increased with higher irrigation and fertilization levels, with the border-irrigation high-fertilization treatment producing the highest emissions. Yield formation was mainly governed by structural growth traits, with plant height showing the strongest predictive ability, followed by stem diameter, whereas leaf area index showed weaker explanatory power. Summer maize yield exhibited a unimodal response to both irrigation and nitrogen input levels. Compared with the D2 treatment, the B2 treatment increased grain yield by 41.33%, while achieving water-saving and fertilizer-saving rates of 38.10% and 35.75%, respectively, thereby achieving an optimal balance between high yield and efficient water–fertilizer utilization. These findings provide theoretical support for summer maize production in the North China Plain and contribute to the promotion of green and sustainable agricultural development. Full article
(This article belongs to the Section Farming Sustainability)
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30 pages, 3636 KB  
Review
Warming Reshapes Land-Atmosphere Coupling: The LST-SM-ET-GPP Framework
by Ruihan Mi, Xuedong Zhao, Ying Ma, Xiangyu Zhang, Leer Bao and Bin Jin
Atmosphere 2026, 17(4), 352; https://doi.org/10.3390/atmos17040352 - 31 Mar 2026
Viewed by 800
Abstract
Against the backdrop of accelerated terrestrial hydrological cycling and the increasing concurrence of drought-heatwave compound extremes under global warming, regional land-atmosphere coupling has emerged as a central mechanism shaping climate feedbacks and trajectories of ecosystem carbon uptake. However, prior studies spanning climatic regimes, [...] Read more.
Against the backdrop of accelerated terrestrial hydrological cycling and the increasing concurrence of drought-heatwave compound extremes under global warming, regional land-atmosphere coupling has emerged as a central mechanism shaping climate feedbacks and trajectories of ecosystem carbon uptake. However, prior studies spanning climatic regimes, observational scales, and data sources have often yielded contradictory conclusions. Here, we challenge these fragmented perspectives by constructing an integrated LST-SM-ET-GPP chain that jointly represents land surface temperature, soil moisture, evapotranspiration, and gross primary productivity, thereby linking water availability, surface energy balance, and plant physiological processes within a unified framework. We synthesize a conceptual diagnostic roadmap for interpreting land-atmosphere coupling across observations and models. When ecosystems operate in humid, energy-limited environments, radiative and advective controls should be prioritized to diagnose system forcing. By contrast, as the system becomes water-depleted, attribution must shift to a nonlinear regime transition framework governed by a critical soil moisture threshold. This threshold mechanism implies that, once the system enters the moisture-limited regime, even modest declines in soil moisture can trigger a rapid weakening of evaporative cooling, substantially amplifying LST anomalies and strongly suppressing GPP. The competitive regulation of stomatal conductance by atmospheric demand (vapor pressure deficit, VPD) and terrestrial supply (rootzone soil moisture) further explains why the “dominant” controlling factor can dynamically reverse across hydrothermal states, timescales, and stages of extreme-event evolution. Notably, the steady-state coupling assumption may break down under flux “flooring” during extreme drought, or when structural buffering such as deep root water uptake is present, delineating strict applicability bounds for existing diagnostic frameworks. Finally, current assessments remain constrained by multiple uncertainties, particularly the lack of ET partitioning constraints, representativeness biases arising from clear-sky observations and sampling-depth limitations, and systematic errors in Earth system model simulations during the warm season. Full article
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16 pages, 1147 KB  
Review
Epigenetic Regulation of Root-Associated Microbiota: Mechanisms and Horticultural Applications
by Subo Tian, Ning Zhang, Guiyu Lin, Xiaoli Cheng, Fubin Wang, Peipei Chang, Golam Jalal Ahammed, Qinghua Shi, Wen-Feng Nie and Yan Zhang
Plants 2026, 15(6), 938; https://doi.org/10.3390/plants15060938 - 19 Mar 2026
Viewed by 693
Abstract
The dynamic interaction between plants and their root-associated microbiota represents a sophisticated and profound biological communication that regulates plant development and the formation of adaptation to the surrounding environment. These interactions function as critical regulators of multiple physiological processes, finally influencing soil fertility [...] Read more.
The dynamic interaction between plants and their root-associated microbiota represents a sophisticated and profound biological communication that regulates plant development and the formation of adaptation to the surrounding environment. These interactions function as critical regulators of multiple physiological processes, finally influencing soil fertility and agricultural productivity. Plants have evolved epigenetic networks that regulate beneficial plant–microbe interactions through regulating immune responses, gene regulation, and metabolite production to enhance stress tolerance and soil adaptation. These regulations collectively govern microbial colonization patterns while establishing reciprocal feedback loops through root exudate–microbe interactions. This review systematically updates contemporary advances in understanding how epigenetic modifications shape rhizosphere microbiome composition and function, and discusses their potential applications in enhancing the yield and quality of horticultural crops, as well as in mitigating continuous cropping obstacles. Full article
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19 pages, 2722 KB  
Article
Characteristics of Fungal Communities in Lava Plateau Ecosystems
by Yanli Zhang, Yan Zhu, Jiaxing Huang, Jiaxin Xue, Yiwei Liu, Haocong Li, Lingjie Shi, Jianhui Jia and Yueyu Sui
Microorganisms 2026, 14(3), 642; https://doi.org/10.3390/microorganisms14030642 - 12 Mar 2026
Viewed by 488
Abstract
Soil fungi are pivotal drivers of biogeochemical cycling, mediating nutrient transformation, plant–soil feedbacks, and ecosystem stability. Understanding their responses to vegetation succession is essential for predicting ecosystem recovery in fragile volcanic landscapes. We investigated soil fungal communities across five successional stages on the [...] Read more.
Soil fungi are pivotal drivers of biogeochemical cycling, mediating nutrient transformation, plant–soil feedbacks, and ecosystem stability. Understanding their responses to vegetation succession is essential for predicting ecosystem recovery in fragile volcanic landscapes. We investigated soil fungal communities across five successional stages on the Jingpo Lake lava plateau—grassland (GL), shrubland (SL), deciduous broad-leaved forest (DB), coniferous and broad-leaved mixed forest (CB), and coniferous forest (CF)—using high-throughput ITS sequencing and soil physicochemical analysis. Basidiomycota and Ascomycota dominated at the phylum level, with Sebacina, Cortinarius, and Mortierella as core genera. Alpha diversity (Shannon, Simpson, Chao1) was significantly higher in early-successional GL and SL than in DB (p < 0.05), while CB exhibited the lowest community evenness (Pielou-e). Co-occurrence networks revealed greater connectivity in GL, whereas forest types showed simplified topologies. LEfSe identified distinct fungal biomarkers for each vegetation type. PICRUSt2-based functional prediction indicated biosynthesis as the dominant pathway (>40%), with significant variation among vegetation types. Redundancy analysis (RDA) identified soil organic matter (SOM) as the primary predictor of fungal community composition. Our findings indicate that vegetation succession is associated with changes in fungal diversity and function primarily linked to variations in SOM, with moisture regimes as a secondary contextual factor. Notably, advanced forest stages exhibited reduced fungal diversity and simplified community structure—highlighting a trade-off between nutrient enrichment and microbial complexity in volcanic ecosystems. These insights advance our understanding of plant–soil–microbe coupling during ecosystem restoration on lava plateaus. Full article
(This article belongs to the Section Environmental Microbiology)
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7 pages, 720 KB  
Communication
Volume Matters: Dilution of Soil Inoculum Reduces Positive Plant–Soil Feedback in Pinus radiata Seedlings
by Joanna L. Green, Lauren P. Waller, Christel Brunschwig, Simeon Smaill and Leo Condron
Plants 2026, 15(5), 809; https://doi.org/10.3390/plants15050809 - 6 Mar 2026
Viewed by 453
Abstract
Soil conditioning can generate persistent plant–soil feedbacks (PSF) that influence plant performance under subsequent growth conditions, yet the role of soil inoculum volume in mediating these effects remains poorly understood. Here, we tested how inoculum volume influences the relative strength of a known [...] Read more.
Soil conditioning can generate persistent plant–soil feedbacks (PSF) that influence plant performance under subsequent growth conditions, yet the role of soil inoculum volume in mediating these effects remains poorly understood. Here, we tested how inoculum volume influences the relative strength of a known positive PSF effect. We performed a plant–soil feedback experiment with Pinus radiata D. Don in two phases: one, a “conditioning phase”, and two, a “feedback phase”, where inoculum from the first phase was used in different dilutions to test the growth differences resulting from conditioning. To understand how inoculum volume affects subsequent growth in the feedback phase, seedlings (n = 12 per treatment) were grown in soil from phase one using different volumetric dilutions; 100% conditioned soil, 50% conditioned soil + 50% inert media, or 25% conditioned soil + 75% inert media. Positive plant–soil feedbacks were observed in undiluted soils: seedlings produced 40–65% greater biomass and experienced 50–70% lower mortality compared to the lowest inoculum treatment. However, this response varied with dilution; the strength of plant–soil feedbacks decreased with increasing dilution of inoculum. These findings highlight soil inoculum volume as an important, but often overlooked, factor in plant–soil feedback experiments and applied soil management. Our study provides experimental evidence that effective soil conditioning depends on both conditioning and a required minimum inoculum volume to confer measurable benefits to future plantings. Full article
(This article belongs to the Section Plant–Soil Interactions)
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22 pages, 1058 KB  
Review
Microbiome-Induced Effects on Root Architecture in Rice Crops: Mechanisms, Drivers, and Functional Consequences
by Misagh Parhizkar, Manuel Esteban Lucas-Borja and Demetrio Antonio Zema
Crops 2026, 6(2), 25; https://doi.org/10.3390/crops6020025 - 25 Feb 2026
Viewed by 824
Abstract
Bacteria play an important role in addressing challenges in rice production by promoting plant growth and enhancing stress tolerance through multiple mechanisms. Different types of soil bacteria affect rice growth by improving nutrient absorption, managing stress, and enhancing root structure. The relationship between [...] Read more.
Bacteria play an important role in addressing challenges in rice production by promoting plant growth and enhancing stress tolerance through multiple mechanisms. Different types of soil bacteria affect rice growth by improving nutrient absorption, managing stress, and enhancing root structure. The relationship between rice plants and bacteria is intricate, as these bacteria can help reduce problems like salt stress, heavy metal toxicity, and infections. This review summarises studies published up to 2025 on how bacteria influence rice roots, including aspects like root length, density, biomass, and volume. Bibliometric analysis shows an increase of over 900% in research interest after 2020, with most studies conducted under controlled conditions and limited field validation. In addition to identifying key bacterial groups such as Bacillus, Pseudomonas, Burkholderia, and Azospirillum, this review identifies research gaps related to context dependency, strain specificity, and scalability. We have also emphasised the need for multi-strain inoculation strategies, field-scale experiments, and integration of microbial selection with rice breeding. The synthesis has highlighted that bacterial strains do not simply stimulate root growth but actively reprogram rice root architecture, modulating elongation, branching, density, and surface area as a response to environmental constraints. These effects are mediated by interconnected mechanisms that include phytohormone production, nutrient solubilisation, deaminase activity, stress-related gene regulation, and microbiome-driven feedback involving root exudation. Overall, viewing bacteria as regulators of root developmental dynamics rather than simple biofertilisers provides new insights for designing climate-adapted and sustainable rice production systems. Full article
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21 pages, 3683 KB  
Article
Boron Uptake by Navel Orange Seedlings as Influenced by Irrigation Water, Rootstock and Soil Texture
by José Miguel de Paz, Enrique Peiró, Maria Tasa, Juan Gabriel Pérez-Pérez and Fernando Visconti
Agronomy 2026, 16(4), 418; https://doi.org/10.3390/agronomy16040418 - 9 Feb 2026
Viewed by 745
Abstract
Boron (B) is an essential but narrow-range micronutrient for citrus, with toxicity risks heightened in dry regions due to potentially high-B irrigation water and limited soil leaching. ‘Forner-Alcaide 5’ (FA5) is a promising rootstock for enhancing B-tolerance of sweet orange, but it had [...] Read more.
Boron (B) is an essential but narrow-range micronutrient for citrus, with toxicity risks heightened in dry regions due to potentially high-B irrigation water and limited soil leaching. ‘Forner-Alcaide 5’ (FA5) is a promising rootstock for enhancing B-tolerance of sweet orange, but it had not been sufficiently tested before this study, specifically considering soil texture. Therefore, this greenhouse study investigated the effects on B absorption and biomass buildup of irrigating navel orange seedlings (cv. Navelina) grafted onto ‘Carrizo’ citrange (CC) and FA5 rootstocks, with 0.11, 2, or 5 mg B L−1 waters and grown in clay loam or sandy loam soils. The results of this complete three-factor trial revealed that leaves are the primary sink for B (24–1300 mg kg−1), indicating passive, transpiration-driven uptake and limited phloem redistribution. The presumed absence of sugar alcohols, and the weak binding affinity of B to the abundant sucrose, may account for the restricted phloem mobility of B in citrus, consistent with the mechanistic interpretation proposed in this study. FA5 rootstock showed greater B tolerance, sustaining 28% higher biomass than CC at 2 mg L−1 B. Plant B uptake was found to be more related to soil soluble B than adsorbed B. Interestingly, the relationship followed a diminishing-returns pattern, thereby suggesting a balancing feedback mechanism, potentially based on B-induced stomatal closure. This analytical link between irrigation B and plant accumulation offers a framework for managing B toxicity, pending field validation. Full article
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31 pages, 2453 KB  
Review
Exploring the Role of Root Exudates in Shaping Plant–Soil–Microbe Interactions to Support Agroecosystem Resilience
by Sandra Martins, Cátia Brito, Miguel Baltazar, Lia-Tânia Dinis and Sandra Pereira
Horticulturae 2026, 12(1), 90; https://doi.org/10.3390/horticulturae12010090 - 14 Jan 2026
Cited by 8 | Viewed by 3521
Abstract
Root exudates are key mediators of plant–soil–microbe interactions, shaping rhizosphere dynamics and influencing agroecosystem resilience. Comprising diverse primary and secondary metabolites, these compounds are actively secreted through specific transport pathways and are modulated by intrinsic plant traits and environmental conditions. Root exudates serve [...] Read more.
Root exudates are key mediators of plant–soil–microbe interactions, shaping rhizosphere dynamics and influencing agroecosystem resilience. Comprising diverse primary and secondary metabolites, these compounds are actively secreted through specific transport pathways and are modulated by intrinsic plant traits and environmental conditions. Root exudates serve as chemical signals that recruit and structure microbial communities, facilitating nutrient mobilization, microbial feedbacks, and the regulation of plant growth and stress responses. By modulating soil chemical, physical, and biological properties, exudates contribute to carbon cycling, soil health, and the maintenance of ecosystem services. Moreover, they play multifunctional roles in enhancing plant tolerance to abiotic and biotic stresses, while also mediating interactions with neighboring plants. This review provides a holistic perspective on root exudation, encompassing their mechanisms and drivers, roles in rhizosphere ecology and plant stress adaptation, and methodological advances, while highlighting opportunities to harness these processes for resilient, productive, and sustainable agroecosystems. Full article
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16 pages, 2222 KB  
Article
Extracellular Self-DNA Accumulation as a Potential Driver of Continuous Cropping Obstacle in Morchella sextelata and Morchella eximia
by Peixin He, Rujiang Wang, Qi Yin, Yingli Cai, Wenchang Zhang, Shaobo Wang, Xiaofei Shi, Shuhong Li and Wei Liu
Horticulturae 2026, 12(1), 78; https://doi.org/10.3390/horticulturae12010078 - 8 Jan 2026
Viewed by 851
Abstract
Continuous cropping obstacle (CCO) is becoming a major restrictive factor limiting the sustainable development of morel industry. The species-specific autotoxicity of extracellular self-DNA (esDNA) may be one of the primary drivers underlying the occurrence of CCO. In this study, the effects of short [...] Read more.
Continuous cropping obstacle (CCO) is becoming a major restrictive factor limiting the sustainable development of morel industry. The species-specific autotoxicity of extracellular self-DNA (esDNA) may be one of the primary drivers underlying the occurrence of CCO. In this study, the effects of short fragments (≤250 bp) of esDNA or extracellular DNA (exDNA) on mycelial growth of cultivable Morchella eximia and M. sextelata were assayed. These effects were quantified using a response index (RI). The results indicated the dose-dependent, strain-specific, and conspecific autotoxicity of esDNA in cultivable morels. At ecologically relevant DNA concentrations, the strain-specific and conspecific growth inhibitory effects of esDNA in tested Morchella strains were consistently negative (RI < 0). Additionally, our study found that the growth-inhibitory effects of exDNA from M. sextelata on M. eximia strains were weaker than those observed in the reverse scenario. Taken together, our study suggests, for the first time, the conspecific autotoxicity of esDNA in cultivable Morchella under laboratory conditions, providing novel insights into the potential mechanisms of CCO and highlighting its prospective applications in morel production. Full article
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15 pages, 2494 KB  
Article
The Effects of Short-Term Warming on Plant Diversity and Ecosystem Multifunctionality in Alpine Grasslands
by Jianghao Cheng, Junxi Wu, Zekai Kong, Mingxue Xiang, Yanjie Zhang, Zhaoqi Wang, Fangfang Shi, Junye Wu, Xuhui Ding and Chunli Li
Diversity 2026, 18(1), 23; https://doi.org/10.3390/d18010023 - 30 Dec 2025
Viewed by 500
Abstract
Climate warming is one of the most pressing global changes, with profound consequences for biodiversity, ecosystem functioning, and the provision of ecosystem services. Although warming is expected to alter soil nutrient cycling and plant community structure, the mechanisms through which it reshapes ecosystem [...] Read more.
Climate warming is one of the most pressing global changes, with profound consequences for biodiversity, ecosystem functioning, and the provision of ecosystem services. Although warming is expected to alter soil nutrient cycling and plant community structure, the mechanisms through which it reshapes ecosystem multifunctionality (EMF) remain insufficiently understood. Here, we conducted a 3-year field warming experiment in an alpine grassland to assess how warming influences plant diversity, soil nutrients, and their joint effects on EMF. We found that plant α-diversity declined in both control and warming groups in 2021 and partially recovered by 2023, though recovery was weaker under warming. In contrast, β-diversity (turnover) showed a continuous increasing trend under warming across years, although differences from the control were not statistically significant. EMF, evaluated with single- and multi-threshold approaches, exhibited a consistent decline, with warming accelerating this reduction and producing more complex bimodal fluctuations within intermediate threshold ranges (55–75% and 80–90%). Warming also restructured the functional drivers of EMF: soil organic carbon (SOC) and available nitrogen (AN) emerged as dominant regulators, whereas the contributions of total nitrogen and turnover weakened. Collectively, these findings demonstrate that warming not only alters biodiversity patterns and ecosystem functions but also reshapes the soil–plant–function feedbacks that sustain EMF. By identifying SOC and AN as critical mediators, this study highlights a mechanistic pathway through which climate warming may undermine ecosystem resilience and long-term sustainability, providing insights essential for predicting terrestrial ecosystem responses under future climate scenarios. Full article
(This article belongs to the Section Plant Diversity)
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