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Search Results (1,044)

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Keywords = plant community models

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17 pages, 5600 KiB  
Article
From Marshes to Mines: Germination and Establishment of Crinum bulbispermum on Gold Mine Tailings
by Vincent C. Clarke, Sarina Claassens, Dirk P. Cilliers and Stefan J. Siebert
Plants 2025, 14(15), 2443; https://doi.org/10.3390/plants14152443 (registering DOI) - 7 Aug 2025
Abstract
The growth potential of Crinum bulbispermum was evaluated on gold mine tailings. The primary objectives were to model the species’ climatic niche in relation to gold mining regions, assess its germination success on tailings, and compare seedling survival and growth on tailings versus [...] Read more.
The growth potential of Crinum bulbispermum was evaluated on gold mine tailings. The primary objectives were to model the species’ climatic niche in relation to gold mining regions, assess its germination success on tailings, and compare seedling survival and growth on tailings versus other soil types. Species distribution modelling identified the South African Grassland Biome on the Highveld (1000+ m above sea level), where the majority of gold mines are located, as highly suitable for the species. Pot trials demonstrated above 85% germination success across all soil treatments, including gold mine tailings, indicating its potential for restoration through direct seeding. An initial seedling establishment rate of 100% further demonstrated the species’ resilience to mine tailings, which are often seasonally dry, nutrient-poor, and may contain potentially toxic metals. However, while C. bulbispermum was able to germinate and establish in mine tailings, long-term growth potential (over 12 months) was constrained by low organic carbon content (0.11%) and high salinity (194.50 mS/m). These findings underscore the critical role of soil chemistry and organic matter in supporting long-term plant establishment and growth on gold tailings. Building on previous research, this study confirms the ability of this thick-rooted geophyte to tolerate chemically extreme soil conditions. Crinum bulbispermum shows promise for phytostabilization and as a potential medicinal plant crop on tailings. However, future research on microbial community interactions and soil amendment strategies is essential to ensure its long-term sustainability. Full article
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12 pages, 2259 KiB  
Article
Soil C:N:P Stoichiometry in Two Contrasting Urban Forests in the Guangzhou Metropolis: Differences and Related Dominates
by Yongmei Xiong, Zhiqi Li, Shiyuan Meng and Jianmin Xu
Forests 2025, 16(8), 1268; https://doi.org/10.3390/f16081268 - 3 Aug 2025
Viewed by 169
Abstract
Carbon (C) sequestration and nitrogen (N) and phosphorus (P) accumulation in urban forest green spaces are significant for global climate regulation and alleviating nutrient pollution. However, the effects of management and conservation practices across different urban forest vegetation types on soil C, N, [...] Read more.
Carbon (C) sequestration and nitrogen (N) and phosphorus (P) accumulation in urban forest green spaces are significant for global climate regulation and alleviating nutrient pollution. However, the effects of management and conservation practices across different urban forest vegetation types on soil C, N, and P contents and stoichiometric ratios remain largely unexplored. We selected forest soils from Guangzhou, a major Metropolis in China, as our study area. Soil samples were collected from two urban secondary forests that naturally regenerated after disturbance (108 samples) and six urban forest parks primarily composed of artificially planted woody plant communities (72 samples). We employed mixed linear models and variance partitioning to analyze and compare soil C, N, and P contents and their stoichiometry and its main driving factors beneath suburban forests and urban park vegetation. These results exhibited that soil pH and bulk density in urban parks were higher than those in suburban forests, whereas soil water content, maximum storage capacity, and capillary porosity were higher in urban forests than in urban parks. Soil C, N, and P contents and their stoichiometry (except for N:P ratio) were significantly higher in suburban forests than in urban parks. Multiple analyzes showed that soil pH had the most pronounced negative influence on soil C, N, C:N, C:P, and N:P, but the strongest positive influence on soil P in urban parks. Soil water content had the strongest positive effect on soil C, N, P, C:N, and C:P, while soil N:P was primarily influenced by the positive effect of soil non-capillary porosity in suburban forests. Overall, our study emphasizes that suburban forests outperform urban parks in terms of carbon and nutrient accumulation, and urban green space management should focus particularly on the impact of soil pH and moisture content on soil C, N, and P contents and their stoichiometry. Full article
(This article belongs to the Special Issue Carbon, Nitrogen, and Phosphorus Storage and Cycling in Forest Soil)
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15 pages, 428 KiB  
Article
Biodiversity Patterns and Community Construction in Subtropical Forests Driven by Species Phylogenetic Environments
by Pengcheng Liu, Jiejie Jiao, Chuping Wu, Weizhong Shao, Xuesong Liu and Liangjin Yao
Plants 2025, 14(15), 2397; https://doi.org/10.3390/plants14152397 - 2 Aug 2025
Viewed by 487
Abstract
To explore the characteristics of species diversity and phylogenetic diversity, as well as the dominant processes of community construction, in different forest types (deciduous broad-leaved forest, mixed coniferous and broad-leaved forest, and Chinese fir plantation) in subtropical regions, analyze the specific driving patterns [...] Read more.
To explore the characteristics of species diversity and phylogenetic diversity, as well as the dominant processes of community construction, in different forest types (deciduous broad-leaved forest, mixed coniferous and broad-leaved forest, and Chinese fir plantation) in subtropical regions, analyze the specific driving patterns of soil nutrients and other environmental factors on the formation of forest diversity in different forest types, and clarify the differences in response to environmental heterogeneity between natural forests and plantation forests. Based on 48 fixed monitoring plots of 50 m × 50 m in Shouchang Forest Farm, Jiande City, Zhejiang Province, woody plants with a diameter at breast height ≥5 cm were investigated. Species diversity indices (Margalef index, Shannon–Wiener index, Simpson index, and Pielou index), phylogenetic structure index (PD), and environmental factors were used to analyze the relationship between diversity characteristics and environmental factors through variance analysis, correlation analysis, and generalized linear models. Phylogenetic structural indices (NRI and NTI) were used, combined with a random zero model, to explore the mechanisms of community construction in different forest types. Research has found that (1) the deciduous broad-leaved forest had the highest species diversity (Margalef index of 4.121 ± 1.425) and phylogenetic diversity (PD index of 21.265 ± 7.796), significantly higher than the mixed coniferous and broad-leaved forest and the Chinese fir plantation (p < 0.05); (2) there is a significant positive correlation between species richness and phylogenetic diversity, with the best fit being AIC = 70.5636 and R2 = 0.9419 in broad-leaved forests; however, the contribution of evenness is limited; (3) the specific effects of soil factors on different forest types: available phosphorus (AP) is negatively correlated with the diversity of deciduous broad-leaved forests (p < 0.05), total phosphorus (TP) promotes the diversity of coniferous and broad-leaved mixed forests, while the diversity of Chinese fir plantations is significantly negatively correlated with total nitrogen (TN); (4) the phylogenetic structure of three different forest types shows a divergent pattern in deciduous broad-leaved forests, indicating that competition and exclusion dominate the construction of deciduous broad-leaved forests; the aggregation mode of Chinese fir plantation indicates that environmental filtering dominates the construction of Chinese fir plantation; the mixed coniferous and broad-leaved forest is a transitional model, indicating that the mixed coniferous and broad-leaved forest is influenced by both stochastic processes and ecological niche processes. In different forest types in subtropical regions, the species and phylogenetic diversity of broad-leaved forests is significantly higher than in other forest types. The impact of soil nutrients on the diversity of different forest types varies, and the characteristics of community construction in different forest types are also different. This indicates the importance of protecting the original vegetation and provides a scientific basis for improving the ecological function of artificial forest ecosystems through structural adjustment. The research results have important practical guidance value for sustainable forest management and biodiversity conservation in the region. Full article
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16 pages, 2326 KiB  
Article
Patterns and Determinants of Ecological Uniqueness in Plant Communities on the Qinghai-Tibetan Plateau
by Liangtao Li and Gheyur Gheyret
Plants 2025, 14(15), 2379; https://doi.org/10.3390/plants14152379 - 1 Aug 2025
Viewed by 259
Abstract
The Qinghai-Tibetan Plateau is one of the world’s most prominent biodiversity hotspots. Understanding the spatial patterns of ecological uniqueness in its plant communities is essential for uncovering the mechanisms of community assembly and informing effective conservation strategies. In this study, we analyzed data [...] Read more.
The Qinghai-Tibetan Plateau is one of the world’s most prominent biodiversity hotspots. Understanding the spatial patterns of ecological uniqueness in its plant communities is essential for uncovering the mechanisms of community assembly and informing effective conservation strategies. In this study, we analyzed data from 758 plots across 338 sites on the Qinghai-Tibetan Plateau. For each plot, the vegetation type was classified, and all plant species present, along with their respective abundance or coverage, were recorded in the database. To assess overall compositional variation, community β-diversity was quantified, while a plot-level approach was applied to determine the influence of local environmental conditions and community characteristics on ecological uniqueness. We used stepwise multiple regressions, variation partitioning, and structural equation modeling to identify the key drivers of spatial variation in ecological uniqueness. Our results show that (1) local contributions to β-diversity (LCBD) exhibit significant geographic variation—increasing with longitude, decreasing with latitude, and showing a unimodal trend along the elevational gradient; (2) shrubs and trees contribute more to β-diversity than herbaceous species, and LCBD is strongly linked to the proportion of rare species; and (3) community characteristics, including species richness and vegetation coverage, are the main direct drivers of ecological uniqueness, explaining 36.9% of the variance, whereas climate and soil properties exert indirect effects through their interactions. Structural equation modeling further reveals a coordinated influence of soil, climate, and community attributes on LCBD, primarily mediated through soil nutrient availability. These findings provide a theoretical basis for adaptive biodiversity management on the Qinghai-Tibetan Plateau and underscore the conservation value of regions with high ecological uniqueness. Full article
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25 pages, 2515 KiB  
Article
Solar Agro Savior: Smart Agricultural Monitoring Using Drones and Deep Learning Techniques
by Manu Mundappat Ramachandran, Bisni Fahad Mon, Mohammad Hayajneh, Najah Abu Ali and Elarbi Badidi
Agriculture 2025, 15(15), 1656; https://doi.org/10.3390/agriculture15151656 - 1 Aug 2025
Viewed by 295
Abstract
The Solar Agro Savior (SAS) is an innovative solution that is assisted by drones for the sustainable utilization of water and plant disease observation in the agriculture sector. This system integrates an alerting mechanism for humidity, moisture, and temperature variations, which affect the [...] Read more.
The Solar Agro Savior (SAS) is an innovative solution that is assisted by drones for the sustainable utilization of water and plant disease observation in the agriculture sector. This system integrates an alerting mechanism for humidity, moisture, and temperature variations, which affect the plants’ health and optimization in water utilization, which enhances plant yield productivity. A significant feature of the system is the efficient monitoring system in a larger region through drones’ high-resolution cameras, which enables real-time, efficient response and alerting for environmental fluctuations to the authorities. The machine learning algorithm, particularly recurrent neural networks, which is a pioneer with agriculture and pest control, is incorporated for intelligent monitoring systems. The proposed system incorporates a specialized form of a recurrent neural network, Long Short-Term Memory (LSTM), which effectively addresses the vanishing gradient problem. It also utilizes an attention-based mechanism that enables the model to assign meaningful weights to the most important parts of the data sequence. This algorithm not only enhances water utilization efficiency but also boosts plant yield and strengthens pest control mechanisms. This system also provides sustainability through the re-utilization of water and the elimination of electric energy through solar panel systems for powering the inbuilt irrigation system. A comparative analysis of variant algorithms in the agriculture sector with a machine learning approach was also illustrated, and the proposed system yielded 99% yield accuracy, a 97.8% precision value, 98.4% recall, and a 98.4% F1 score value. By encompassing solar irrigation and artificial intelligence-driven analysis, the proposed algorithm, Solar Argo Savior, established a sustainable framework in the latest agricultural sectors and promoted sustainability to protect our environment and community. Full article
(This article belongs to the Section Agricultural Technology)
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26 pages, 1790 KiB  
Article
A Hybrid Deep Learning Model for Aromatic and Medicinal Plant Species Classification Using a Curated Leaf Image Dataset
by Shareena E. M., D. Abraham Chandy, Shemi P. M. and Alwin Poulose
AgriEngineering 2025, 7(8), 243; https://doi.org/10.3390/agriengineering7080243 - 1 Aug 2025
Viewed by 249
Abstract
In the era of smart agriculture, accurate identification of plant species is critical for effective crop management, biodiversity monitoring, and the sustainable use of medicinal resources. However, existing deep learning approaches often underperform when applied to fine-grained plant classification tasks due to the [...] Read more.
In the era of smart agriculture, accurate identification of plant species is critical for effective crop management, biodiversity monitoring, and the sustainable use of medicinal resources. However, existing deep learning approaches often underperform when applied to fine-grained plant classification tasks due to the lack of domain-specific, high-quality datasets and the limited representational capacity of traditional architectures. This study addresses these challenges by introducing a novel, well-curated leaf image dataset consisting of 39 classes of medicinal and aromatic plants collected from the Aromatic and Medicinal Plant Research Station in Odakkali, Kerala, India. To overcome performance bottlenecks observed with a baseline Convolutional Neural Network (CNN) that achieved only 44.94% accuracy, we progressively enhanced model performance through a series of architectural innovations. These included the use of a pre-trained VGG16 network, data augmentation techniques, and fine-tuning of deeper convolutional layers, followed by the integration of Squeeze-and-Excitation (SE) attention blocks. Ultimately, we propose a hybrid deep learning architecture that combines VGG16 with Batch Normalization, Gated Recurrent Units (GRUs), Transformer modules, and Dilated Convolutions. This final model achieved a peak validation accuracy of 95.24%, significantly outperforming several baseline models, such as custom CNN (44.94%), VGG-19 (59.49%), VGG-16 before augmentation (71.52%), Xception (85.44%), Inception v3 (87.97%), VGG-16 after data augumentation (89.24%), VGG-16 after fine-tuning (90.51%), MobileNetV2 (93.67), and VGG16 with SE block (94.94%). These results demonstrate superior capability in capturing both local textures and global morphological features. The proposed solution not only advances the state of the art in plant classification but also contributes a valuable dataset to the research community. Its real-world applicability spans field-based plant identification, biodiversity conservation, and precision agriculture, offering a scalable tool for automated plant recognition in complex ecological and agricultural environments. Full article
(This article belongs to the Special Issue Implementation of Artificial Intelligence in Agriculture)
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24 pages, 1508 KiB  
Article
Genomic Prediction of Adaptation in Common Bean (Phaseolus vulgaris L.) × Tepary Bean (P. acutifolius A. Gray) Hybrids
by Felipe López-Hernández, Diego F. Villanueva-Mejía, Adriana Patricia Tofiño-Rivera and Andrés J. Cortés
Int. J. Mol. Sci. 2025, 26(15), 7370; https://doi.org/10.3390/ijms26157370 - 30 Jul 2025
Viewed by 302
Abstract
Climate change is jeopardizing global food security, with at least 713 million people facing hunger. To face this challenge, legumes as common beans could offer a nature-based solution, sourcing nutrients and dietary fiber, especially for rural communities in Latin America and Africa. However, [...] Read more.
Climate change is jeopardizing global food security, with at least 713 million people facing hunger. To face this challenge, legumes as common beans could offer a nature-based solution, sourcing nutrients and dietary fiber, especially for rural communities in Latin America and Africa. However, since common beans are generally heat and drought susceptible, it is imperative to speed up their molecular introgressive adaptive breeding so that they can be cultivated in regions affected by extreme weather. Therefore, this study aimed to couple an advanced panel of common bean (Phaseolus vulgaris L.) × tolerant Tepary bean (P. acutifolius A. Gray) interspecific lines with Bayesian regression algorithms to forecast adaptation to the humid and dry sub-regions at the Caribbean coast of Colombia, where the common bean typically exhibits maladaptation to extreme heat waves. A total of 87 advanced lines with hybrid ancestries were successfully bred, surpassing the interspecific incompatibilities. This hybrid panel was genotyped by sequencing (GBS), leading to the discovery of 15,645 single-nucleotide polymorphism (SNP) markers. Three yield components (yield per plant, and number of seeds and pods) and two biomass variables (vegetative and seed biomass) were recorded for each genotype and inputted in several Bayesian regression models to identify the top genotypes with the best genetic breeding values across three localities on the Colombian coast. We comparatively analyzed several regression approaches, and the model with the best performance for all traits and localities was BayesC. Also, we compared the utilization of all markers and only those determined as associated by a priori genome-wide association studies (GWAS) models. Better prediction ability with the complete SNP set was indicative of missing heritability as part of GWAS reconstructions. Furthermore, optimal SNP sets per trait and locality were determined as per the top 500 most explicative markers according to their β regression effects. These 500 SNPs, on average, overlapped in 5.24% across localities, which reinforced the locality-dependent nature of polygenic adaptation. Finally, we retrieved the genomic estimated breeding values (GEBVs) and selected the top 10 genotypes for each trait and locality as part of a recommendation scheme targeting narrow adaption in the Caribbean. After validation in field conditions and for screening stability, candidate genotypes and SNPs may be used in further introgressive breeding cycles for adaptation. Full article
(This article belongs to the Special Issue Plant Breeding and Genetics: New Findings and Perspectives)
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25 pages, 3167 KiB  
Article
A Sustainability-Oriented Assessment of Noise Impacts on University Dormitories: Field Measurements, Student Survey, and Modeling Analysis
by Xiaoying Wen, Shikang Zhou, Kainan Zhang, Jianmin Wang and Dongye Zhao
Sustainability 2025, 17(15), 6845; https://doi.org/10.3390/su17156845 - 28 Jul 2025
Viewed by 336
Abstract
Ensuring a sustainable and healthy human environment in university dormitories is essential for students’ learning, living, and overall health and well-being. To address this need, we carried out a series of systematic field measurements of the noise levels at 30 dormitories in three [...] Read more.
Ensuring a sustainable and healthy human environment in university dormitories is essential for students’ learning, living, and overall health and well-being. To address this need, we carried out a series of systematic field measurements of the noise levels at 30 dormitories in three representative major urban universities in a major provincial capital city in China and designed and implemented a comprehensive questionnaire and surveyed 1005 students about their perceptions of their acoustic environment. We proposed and applied a sustainability–health-oriented, multidimensional assessment framework to assess the acoustic environment of the dormitories and student responses to natural sound, technological sounds, and human-made sounds. Using the Structural Equation Modeling (SEM) approach combined with the field measurements and student surveys, we identified three categories and six factors on student health and well-being for assessing the acoustic environment of university dormitories. The field data indicated that noise levels at most of the measurement points exceeded the recommended or regulatory thresholds. Higher noise impacts were observed in early mornings and evenings, primarily due to traffic noise and indoor activities. Natural sounds (e.g., wind, birdsong, water flow) were highly valued by students for their positive effect on the students’ pleasantness and satisfaction. Conversely, human and technological sounds (traffic noise, construction noise, and indoor noise from student activities) were deemed highly disturbing. Gender differences were evident in the assessment of the acoustic environment, with male students generally reporting higher levels of the pleasantness and preference for natural sounds compared to female students. Educational backgrounds showed no significant influence on sound perceptions. The findings highlight the need for providing actionable guidelines for dormitory ecological design, such as integrating vertical greening in dormitory design, water features, and biodiversity planting to introduce natural soundscapes, in parallel with developing campus activity standards and lifestyle during noise-sensitive periods. The multidimensional assessment framework will drive a sustainable human–ecology–sound symbiosis in university dormitories, and the category and factor scales to be employed and actions to improve the level of student health and well-being, thus, providing a reference for both research and practice for sustainable cities and communities. Full article
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18 pages, 4241 KiB  
Article
Distribution Patterns and Assembly Mechanisms of Rhizosphere Soil Microbial Communities in Schisandra sphenanthera Across Altitudinal Gradients
by Weimin Li, Luyao Yang, Xiaofeng Cong, Zhuxin Mao and Yafu Zhou
Biology 2025, 14(8), 944; https://doi.org/10.3390/biology14080944 - 27 Jul 2025
Viewed by 254
Abstract
To investigate the characteristics of rhizosphere soil microbial communities associated with Schisandra sphenanthera across different altitudinal gradients and to reveal the driving factors of microbial community dynamics, this study collected rhizosphere soil samples at four elevations: 900 m (HB1), 1100 m (HB2), 1300 [...] Read more.
To investigate the characteristics of rhizosphere soil microbial communities associated with Schisandra sphenanthera across different altitudinal gradients and to reveal the driving factors of microbial community dynamics, this study collected rhizosphere soil samples at four elevations: 900 m (HB1), 1100 m (HB2), 1300 m (HB3), and 1500 m (HB4). High-throughput sequencing and molecular ecological network analysis were employed to analyze the microbial community composition and species interactions. A null model was applied to elucidate community assembly mechanisms. The results demonstrated that bacterial communities were dominated by Proteobacteria, Acidobacteriota, Actinobacteriota, and Chloroflexi. The relative abundance of Proteobacteria increased with elevation, while that of Acidobacteriota and Actinobacteriota declined. Fungal communities were primarily composed of Ascomycota and Basidiomycota, with both showing elevated relative abundances at higher altitudes. Diversity indices revealed that HB2 exhibited the highest bacterial Chao, Ace, and Shannon indices but the lowest Simpson index. For fungi, HB3 displayed the highest Chao and Ace indices, whereas HB4 showed the highest Shannon index and the lowest Simpson index. Ecological network analysis indicated stronger bacterial competition at lower elevations and enhanced cooperation at higher elevations, contrasting with fungal communities that exhibited increased competition at higher altitudes. Altitude and soil nutrients were negatively correlated with soil carbon content, while plant nutrients and fungal diversity positively correlated with soil carbon. Null model analysis suggested that deterministic processes dominated bacterial community assembly, whereas stochastic processes governed fungal assembly. These findings highlight significant altitudinal shifts in the microbial community structure and assembly mechanisms in S. sphenanthera rhizosphere soils, driven by the synergistic effects of soil nutrients, plant growth, and fungal diversity. This study provides critical insights into microbial ecology and carbon cycling in alpine ecosystems, offering a scientific basis for ecosystem management and conservation. Full article
(This article belongs to the Section Ecology)
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23 pages, 852 KiB  
Article
Does Foraging or the Avoidance of Predation Determine Habitat Selection by Selective Resident Grazers in the Serengeti Woodlands? A Mixed Strategy with Season
by Patrick Duncan and Anthony R. E. Sinclair
Animals 2025, 15(15), 2202; https://doi.org/10.3390/ani15152202 - 26 Jul 2025
Viewed by 256
Abstract
Savanna systems are characterised by a community of large mammal herbivores with up to 30 species; coexistence is based on resource partitioning. In this paper we analyse the features of the landscape and plant structure which lead herbivores to use particular locations, a [...] Read more.
Savanna systems are characterised by a community of large mammal herbivores with up to 30 species; coexistence is based on resource partitioning. In this paper we analyse the features of the landscape and plant structure which lead herbivores to use particular locations, a key to resource partitioning. The processes involved, top-down versus bottom-up, are well known for large species and small ones but not for medium-sized ones. We use two resident, medium-sized species, topi (Damaliscus lunatus jimela) and kongoni, (Alcelaphus buselaphus cokei) in the central woodlands of the Serengeti; selection of habitat by the residents is important for predator-prey interactions and for interactions among the grazers. Using Principal Component Analysis and Multiple Regression we develop highly predictive models which show that resource availability is the critical determinant of habitat selection in the dry season; and reduction in predation risk appears to be important in the wet season. These results show for the first time that habitat selection by the medium-sized herbivores is driven by different strategies in the two seasons. This contributes to understanding the processes involved in the dynamics of this globally important savanna system, a necessary foundation for management. Full article
(This article belongs to the Section Ecology and Conservation)
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16 pages, 2096 KiB  
Article
Acridine Derivatives as Antifungal and Antivirulence Agents Against Candida albicans
by Amra Yunus, Oluwatosin Oluwaseun Faleye, Jin-Hyung Lee and Jintae Lee
Int. J. Mol. Sci. 2025, 26(15), 7228; https://doi.org/10.3390/ijms26157228 - 25 Jul 2025
Viewed by 434
Abstract
Candida albicans is a clinically important fungal pathogen capable of causing both superficial and systemic infections, particularly in immunocompromised individuals. A key factor contributing to its pathogenicity is its ability to form biofilms, structured microbial communities that confer significant resistance to conventional antifungal [...] Read more.
Candida albicans is a clinically important fungal pathogen capable of causing both superficial and systemic infections, particularly in immunocompromised individuals. A key factor contributing to its pathogenicity is its ability to form biofilms, structured microbial communities that confer significant resistance to conventional antifungal therapies. Addressing this challenge, we explored the antivirulence potential of acridine derivatives, a class of heterocyclic aromatic compounds known for their diverse biological activities, including antimicrobial, antitumor, and antiparasitic properties. In this study, a series of acridine derivatives was screened against C. albicans biofilms, revealing notable inhibitory activity and highlighting their potential as scaffolds for the development of novel antifungal agents. Among the tested compounds, acridine-4-carboxylic acid demonstrated the most promising activity, significantly inhibiting the biofilm formation at 10 µg/mL without affecting planktonic cell growth, and with a minimum inhibitory concentration (MIC) of 60 µg/mL. Furthermore, it attenuated filamentation and cell aggregation in a fluconazole-resistant C. albicans strain. Toxicity assessments using Caenorhabditis elegans and plant models supported its low-toxicity profile. These findings highlight the potential of acridine-based scaffolds, particularly acridine-4-carboxylic acid, as lead structures for the development of therapeutics targeting both fungal growth and biofilm formation in Candida albicans infections. Full article
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29 pages, 2926 KiB  
Review
Microbial Symbiosis in Lepidoptera: Analyzing the Gut Microbiota for Sustainable Pest Management
by Abdul Basit, Inzamam Ul Haq, Moazam Hyder, Muhammad Humza, Muhammad Younas, Muhammad Rehan Akhtar, Muhammad Adeel Ghafar, Tong-Xian Liu and Youming Hou
Biology 2025, 14(8), 937; https://doi.org/10.3390/biology14080937 - 25 Jul 2025
Viewed by 416
Abstract
Recent advances in microbiome studies have deepened our understanding of endosymbionts and gut-associated microbiota in host biology. Of those, lepidopteran systems in particular harbor a complex and diverse microbiome with various microbial taxa that are stable and transmitted between larval and adult stages, [...] Read more.
Recent advances in microbiome studies have deepened our understanding of endosymbionts and gut-associated microbiota in host biology. Of those, lepidopteran systems in particular harbor a complex and diverse microbiome with various microbial taxa that are stable and transmitted between larval and adult stages, and others that are transient and context-dependent. We highlight key microorganisms—including Bacillus, Lactobacillus, Escherichia coli, Pseudomonas, Rhizobium, Fusarium, Aspergillus, Saccharomyces, Bifidobacterium, and Wolbachia—that play critical roles in microbial ecology, biotechnology, and microbiome studies. The fitness implications of these microbial communities can be variable; some microbes improve host performance, while others neither positively nor negatively impact host fitness, or their impact is undetectable. This review examines the central position played by the gut microbiota in interactions of insects with plants, highlighting the functions of the microbiota in the manipulation of the behavior of herbivorous pests, modulating plant physiology, and regulating higher trophic levels in natural food webs. It also bridges microbiome ecology and applied pest management, emphasizing S. frugiperda as a model for symbiont-based intervention. As gut microbiota are central to the life history of herbivorous pests, we consider how these interactions can be exploited to drive the development of new, environmentally sound biocontrol strategies. Novel biotechnological strategies, including symbiont-based RNA interference (RNAi) and paratransgenesis, represent promising but still immature technologies with major obstacles to overcome in their practical application. However, microbiota-mediated pest control is an attractive strategy to move towards sustainable agriculture. Significantly, the gut microbiota of S. frugiperda is essential for S. frugiperda to adapt to a wide spectrum of host plants and different ecological niches. Studies have revealed that the microbiome of S. frugiperda has a close positive relationship with the fitness and susceptibility to entomopathogenic fungi; therefore, targeting the S. frugiperda microbiome may have good potential for innovative biocontrol strategies in the future. Full article
(This article belongs to the Special Issue Recent Advances in Wolbachia and Spiroplasma Symbiosis)
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23 pages, 30904 KiB  
Article
How Do Invasive Species Influence Biotic and Abiotic Factors Drive Vegetation Success in Salt Marsh Ecosystems?
by Yong Zhou, Chunqi Qiu, Hongyu Liu, Yufeng Li, Cheng Wang, Gang Wang, Mengyuan Su and Chen He
Land 2025, 14(8), 1523; https://doi.org/10.3390/land14081523 - 24 Jul 2025
Viewed by 248
Abstract
Vegetation succession is a critical indicator of ecosystem structure and function and is often disrupted by the expansion of invasive species. However, ecosystem-scale studies elucidating invasion-driven succession mechanisms remain limited. This research focused on the Yancheng coastal salt marsh and analyzed the distribution [...] Read more.
Vegetation succession is a critical indicator of ecosystem structure and function and is often disrupted by the expansion of invasive species. However, ecosystem-scale studies elucidating invasion-driven succession mechanisms remain limited. This research focused on the Yancheng coastal salt marsh and analyzed the distribution variation of invasive species (Spartina alterniflora) and native species (Suaeda salsa and Phragmites australis) from 1987 to 2022 via the Google Earth Engine and random forest method. Logistic/Gaussian models were used to quantify land–sea distribution changes and vegetation succession trajectories. By integrating data on soil salinity, invasion duration, and fractional vegetation cover, generalized additive models (GAMs) were applied to identify the main factors influencing vegetation succession and to explore how Spartina alterniflora invasion affects the succession of salt marsh vegetation. The results indicated that the areas of Spartina alterniflora and Phragmites australis significantly increased by 3787.49 ha and 3452.60 ha in 35 years, respectively, contrasting with Suaeda salsa’s 82.46% decline. The FVC in the area has significantly increased by 42.10%, especially in the coexisted areas of different vegetation communities, indicating intensified interspecific competition. The overall trend of soil salinity was decreasing, with a decrease in soil salinity in native species areas from 0.72% to 0.37%. From the results of GAMs, soil salinity, tidal action, and invasion duration were significant factors influencing the distribution of native species, but salinity was not a significant factor affecting the Spartina alterniflora distribution. The findings revealed that the expansion of Spartina alterniflora changed the soil salinity and interspecific interactions, thereby altering the original plant community structure and establishing a new vegetation succession. This study enhances the understanding of the impacts of invasive species on ecosystems and offers theoretical support for salt marsh restoration. Full article
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26 pages, 8709 KiB  
Article
Minding Spatial Allocation Entropy: Sentinel-2 Dense Time Series Spectral Features Outperform Vegetation Indices to Map Desert Plant Assemblages
by Frederick N. Numbisi
Remote Sens. 2025, 17(15), 2553; https://doi.org/10.3390/rs17152553 - 23 Jul 2025
Viewed by 288
Abstract
The spatial distribution of ephemeral and perennial dryland plant species is increasingly modified and restricted by ever-changing climates and development expansion. At the interface of biodiversity conservation and developmental planning in desert landscapes is the growing need for adaptable tools in identifying and [...] Read more.
The spatial distribution of ephemeral and perennial dryland plant species is increasingly modified and restricted by ever-changing climates and development expansion. At the interface of biodiversity conservation and developmental planning in desert landscapes is the growing need for adaptable tools in identifying and monitoring these ecologically fragile plant assemblages, habitats, and, often, heritage sites. This study evaluates usage of Sentinel-2 time series composite imagery to discriminate vegetation assemblages in a hyper-arid landscape. Spatial predictor spaces were compared to classify different vegetation communities: spectral components (PCs), vegetation indices (VIs), and their combination. Further, the uncertainty in discriminating field-verified vegetation assemblages is assessed using Shannon entropy and intensity analysis. Lastly, the intensity analysis helped to decipher and quantify class transitions between maps from different spatial predictors. We mapped plant assemblages in 2022 from combined PCs and VIs at an overall accuracy of 82.71% (95% CI: 81.08, 84.28). A high overall accuracy did not directly translate to high class prediction probabilities. Prediction by spectral components, with comparably lower accuracy (80.32, 95% CI: 78.60, 81.96), showed lower class uncertainty. Class disagreement or transition between classification models was mainly contributed by class exchange (a component of spatial allocation) and less so from quantity disagreement. Different artefacts of vegetation classes are associated with the predictor space—spectral components versus vegetation indices. This study contributes insights into using feature extraction (VIs) versus feature selection (PCs) for pixel-based classification of plant assemblages. Emphasising the ecologically sensitive vegetation in desert landscapes, the study contributes uncertainty considerations in translating optical satellite imagery to vegetation maps of arid landscapes. These are perceived to inform and support vegetation map creation and interpretation for operational management and conservation of plant biodiversity and habitats in such landscapes. Full article
(This article belongs to the Section Remote Sensing in Agriculture and Vegetation)
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17 pages, 11610 KiB  
Article
Exploring the Impact of Species Participation Levels on the Performance of Dominant Plant Identification Models in the Sericite–Artemisia Desert Grassland by Using Deep Learning
by Wenhao Liu, Guili Jin, Wanqiang Han, Mengtian Chen, Wenxiong Li, Chao Li and Wenlin Du
Agriculture 2025, 15(14), 1547; https://doi.org/10.3390/agriculture15141547 - 18 Jul 2025
Viewed by 282
Abstract
Accurate plant species identification in desert grasslands using hyperspectral data is a critical prerequisite for large-scale, high-precision grassland monitoring and management. However, due to prolonged overgrazing and the inherent ecological vulnerability of the environment, sericite–Artemisia desert grassland has experienced significant ecological degradation. [...] Read more.
Accurate plant species identification in desert grasslands using hyperspectral data is a critical prerequisite for large-scale, high-precision grassland monitoring and management. However, due to prolonged overgrazing and the inherent ecological vulnerability of the environment, sericite–Artemisia desert grassland has experienced significant ecological degradation. Therefore, in this study, we obtained spectral images of the grassland in April 2022 using a Soc710 VP imaging spectrometer (Surface Optics Corporation, San Diego, CA, USA), which were classified into three levels (low, medium, and high) based on the level of participation of Seriphidium transiliense (Poljakov) Poljakov and Ceratocarpus arenarius L. in the community. The optimal index factor (OIF) was employed to synthesize feature band images, which were subsequently used as input for the DeepLabv3p, PSPNet, and UNet deep learning models in order to assess the influence of species participation on classification accuracy. The results indicated that species participation significantly impacted spectral information extraction and model classification performance. Higher participation enhanced the scattering of reflectivity in the canopy structure of S. transiliense, while the light saturation effect of C. arenarius was induced by its short stature. Band combinations—such as Blue, Red Edge, and NIR (BREN) and Red, Red Edge, and NIR (RREN)—exhibited strong capabilities in capturing structural vegetation information. The identification model performances were optimal, with a high level of S. transiliense participation and with DeepLabv3p, PSPNet, and UNet achieving an overall accuracy (OA) of 97.86%, 96.51%, and 98.20%. Among the tested models, UNet exhibited the highest classification accuracy and robustness with small sample datasets, effectively differentiating between S. transiliense, C. arenarius, and bare ground. However, when C. arenarius was the primary target species, the model’s performance declined as its participation levels increased, exhibiting significant omission errors for S. transiliense, whose producer’s accuracy (PA) decreased by 45.91%. The findings of this study provide effective technical means and theoretical support for the identification of plant species and ecological monitoring in sericite–Artemisia desert grasslands. Full article
(This article belongs to the Section Artificial Intelligence and Digital Agriculture)
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