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Search Results (217)

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Keywords = nitrogen and sulfur cycling

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19 pages, 6001 KiB  
Article
Distinct Regional and Seasonal Patterns of Atmospheric NH3 Observed from Satellite over East Asia
by Haklim Choi, Mi Eun Park and Jeong-Ho Bae
Remote Sens. 2025, 17(15), 2587; https://doi.org/10.3390/rs17152587 - 24 Jul 2025
Viewed by 213
Abstract
Ammonia (NH3), as a vital component of the nitrogen cycle, exerts significant influence on the biosphere, air quality, and climate by contributing to secondary aerosol formation through its reactions with sulfur dioxide (SO2) and nitrogen oxides (NOx). [...] Read more.
Ammonia (NH3), as a vital component of the nitrogen cycle, exerts significant influence on the biosphere, air quality, and climate by contributing to secondary aerosol formation through its reactions with sulfur dioxide (SO2) and nitrogen oxides (NOx). Despite its critical environmental role, NH3’s transient atmospheric lifetime and the variability in spatial and temporal distributions pose challenges for effective global monitoring and comprehensive impact assessment. Recognizing the inadequacies in current in situ measurement capabilities, this study embarked on an extensive analysis of NH3’s temporal and spatial characteristics over East Asia, using the Infrared Atmospheric Sounding Interferometer (IASI) onboard the MetOp-B satellite from 2013 to 2024. The atmospheric NH3 concentrations exhibit clear seasonality, beginning to rise in spring, peaking in summer, and then decreasing in winter. Overall, atmospheric NH3 shows an annual increasing trend, with significant increases particularly evident in Eastern China, especially in June. The regional NH3 trends within China have varied, with steady increases across most regions, while the Northeastern China Plain remained stable until a recent rapid rise. South Korea continues to show consistent and accelerating growth. East Asia demonstrates similar NH3 emission characteristics, driven by farmland and livestock. The spatial and temporal inconsistencies between satellite data and global chemical transport models underscore the importance of establishing accurate NH3 emission inventories in East Asia. Full article
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20 pages, 3953 KiB  
Article
Straw Returning Combined with Application of Sulfur-Coated Urea Improved Rice Yield and Nitrogen Use Efficiency Through Enhancing Carbon and Nitrogen Metabolism
by Guangxin Zhao, Kaiyu Gao, Ming Gao, Xiaotian Xu, Zeming Li, Xianzhi Yang, Ping Tian, Xiaoshuang Wei, Zhihai Wu and Meiying Yang
Agriculture 2025, 15(14), 1554; https://doi.org/10.3390/agriculture15141554 - 19 Jul 2025
Viewed by 335
Abstract
Straw returning inhibits tillering at the early stage of rice growth and thus affects grain yield. Sulfur-coated urea (SCU) has been expected to increase nitrogen use efficiency (NUE) and yield, save labor input, and reduce environmental pollution in crop production. Nevertheless, the sulfur [...] Read more.
Straw returning inhibits tillering at the early stage of rice growth and thus affects grain yield. Sulfur-coated urea (SCU) has been expected to increase nitrogen use efficiency (NUE) and yield, save labor input, and reduce environmental pollution in crop production. Nevertheless, the sulfur coatings of SCU are easy to break and then shorten the nutrient release cycle. Whether there was a complementary effect between straw returning and SCU in NUE and grain yield had remained elusive. To investigate the effects of straw returning combined with the application of SCU on NUE and rice yield, a two-year field experiment was conducted from 2022 to 2023 with three treatments (straw returning combined with conventional urea (SRU), no straw returning combined with SCU (NRS), straw returning combined with SCU (SRS)). We found that straw returning combined with the application of SCU increased rice yield and NUE significantly. Compared with SRU and NRS, SRS treatments significantly increased grain yield by 14.61–16.22%, and 4.14–7.35%, respectively. Higher effective panicle numbers per m2 and grain numbers per panicle were recorded in NRS and SRS treatments than SRU. SRS treatment increased nitrogen recovery efficiency by 79.53% and 22.97%, nitrogen agronomic efficiency by 18.68% and 17.37%, and nitrogen partial factor productivity by 10.51% and 9.81% compared with SRU and NRS treatment, respectively. The enhanced NUE in SRS was driven by higher leaf area index, SPAD value, net photosynthetic rate, carbon metabolic enzyme (RuBP and SPS) activity, nitrogen metabolic enzyme (NR, GS, and GOGAT) activity, sucrose and nitrogen content in leaves, and nitrogen accumulation in plant during grain filling. Moreover, the improved yield in SRS was closely related to superior NUE. In conclusion, straw returning combined with application of SCU boosted grain yield and NUE via enhanced carbon–nitrogen metabolism during the late growth period in rice. Full article
(This article belongs to the Special Issue Effects of Crop Management on Yields)
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17 pages, 1170 KiB  
Article
Effect of Sulfur Poisoning During Worldwide Harmonized Light Vehicles Test Cycle on NOx Reduction Performance and Active Sites of Selective Catalytic Reduction Filter
by Zhou Zhou, Fei Yu, Dongxia Yang, Shiying Chang, Xiaokun He, Yunkun Zhao, Jiangli Ma, Ting Chen, Huilong Lai and He Lin
Catalysts 2025, 15(7), 682; https://doi.org/10.3390/catal15070682 - 14 Jul 2025
Viewed by 439
Abstract
Selective catalytic reduction filter (SDPF) technology constitutes a critical methodology for controlling nitrogen oxide (NOx) and particulate matter emissions from light-duty diesel vehicles. A series of SDPFs with different sulfur poisoning times and concentrations were prepared using the worldwide harmonized light [...] Read more.
Selective catalytic reduction filter (SDPF) technology constitutes a critical methodology for controlling nitrogen oxide (NOx) and particulate matter emissions from light-duty diesel vehicles. A series of SDPFs with different sulfur poisoning times and concentrations were prepared using the worldwide harmonized light vehicles test cycle (WLTC). Bench testing revealed that sulfur poisoning diminished the catalyst’s NH3 storage capacity, impaired the transient NOx reduction efficiency, and induced premature ammonia leakage. After multiple sulfur poisoning incidents, the NOx reduction performance stabilized. Higher SO2 concentrations accelerated catalyst deactivation and hastened the attainment of this equilibrium state. The characterization results for the catalyst indicate that the catalyst accumulated the same sulfur content after tail gas poisoning with different sulfur concentrations and that sulfur existed in the form of SO42−. The sulfur species in low-sulfur-poisoning-concentration catalysts mainly included sulfur ammonia and sulfur copper species, while high-sulfur-poisoning-concentration catalysts contained a higher proportion of sulfur copper species. Neither species type significantly altered the zeolite coating’s crystalline structure. Sulfur ammonia species could easily lead to a significant decrease in the specific surface area of the catalyst, which could be decomposed at 500 °C to achieve NOx reduction performance regeneration. In contrast, sulfur copper species required higher decomposition temperatures (600 °C), achieving only partial regeneration. Full article
(This article belongs to the Section Environmental Catalysis)
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18 pages, 7268 KiB  
Article
Effects of Pyrolysis and Activation Conditions on SO2 and NO Adsorption by Biochar and Its Environmental Impact
by Kyungil Cho, Hyeonrok Choi and Yongwoon Lee
Sustainability 2025, 17(13), 6137; https://doi.org/10.3390/su17136137 - 4 Jul 2025
Viewed by 355
Abstract
This study investigates the adsorption performance of biochar synthesized under varying pyrolysis and CO2 activation conditions for the simultaneous removal of nitrogen monoxide (NO) and sulfur dioxide (SO2), with an additional focus on its environmental impacts via life cycle assessment [...] Read more.
This study investigates the adsorption performance of biochar synthesized under varying pyrolysis and CO2 activation conditions for the simultaneous removal of nitrogen monoxide (NO) and sulfur dioxide (SO2), with an additional focus on its environmental impacts via life cycle assessment (LCA). Biochar was produced from Hinoki cypress using a two-stage process comprising initial pyrolysis followed by CO2 activation, and its physicochemical properties were evaluated through pore structure analysis. Adsorption experiments were conducted under both single- and combined-gas conditions to assess the synergistic or competitive behaviors of NO and SO2 adsorption. The results indicated that activation conditions significantly influenced the surface area and pore volume of biochar, leading to enhanced gas adsorption capacities. A trade-off between biochar yield and pollutant removal efficiency was observed, suggesting an optimal activation temperature balancing these two factors. Furthermore, the LCA approach, employing IPCC 2021 GWP 100 metrics, quantified the environmental impacts of biochar production under different thermal conditions. The findings revealed that although higher activation temperatures improved adsorption efficiency, they also resulted in increased energy consumption and associated greenhouse gas emissions. These outcomes demonstrate the necessity of optimizing activation parameters not only for functional performance but also for environmental sustainability. This work provides insight into designing efficient biochar-based gas treatment systems and supports their potential application as eco-friendly alternatives in industrial emission control strategies. Full article
(This article belongs to the Special Issue Biomass Transformation and Sustainability)
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19 pages, 5133 KiB  
Article
Comparative Metagenomics Reveals Microbial Diversity and Biogeochemical Drivers in Deep-Sea Sediments of the Marcus-Wake and Magellan Seamounts
by Chengcheng Li, Bailin Cong, Wenquan Zhang, Tong Lu, Ning Guo, Linlin Zhao, Zhaohui Zhang and Shenghao Liu
Microorganisms 2025, 13(7), 1467; https://doi.org/10.3390/microorganisms13071467 - 24 Jun 2025
Viewed by 587
Abstract
Seamounts are distributed globally across the oceans and are generally considered oases of biomass abundance as well as hotspots of species richness. Diverse microbial communities are essential for biogeochemical cycling, yet their functional partitioning among seamounts with geographic features remains poorly investigated. Through [...] Read more.
Seamounts are distributed globally across the oceans and are generally considered oases of biomass abundance as well as hotspots of species richness. Diverse microbial communities are essential for biogeochemical cycling, yet their functional partitioning among seamounts with geographic features remains poorly investigated. Through metagenomic sequencing and genome-resolved analysis, we revealed that Proteobacteria (33.18–40.35%) dominated the bacterial communities, while Thaumarchaeota (5.98–10.86%) were the predominant archaea. Metagenome-assembled genomes uncovered 117 medium-quality genomes, 81.91% of which lacked species-level annotation, highlighting uncultured diversity. In the Nazuna seamount, which is located in the Marcus-Wake seamount region, microbiomes exhibited heightened autotrophic potential via the 3-hydroxypropionate cycle and dissimilatory nitrate reduction, whereas in the Magellan seamounts regions, nitrification and organic nitrogen metabolism were prioritized. Sulfur oxidation genes dominated Nazuna seamount microbes, with 33 MAGs coupling denitrification to sulfur redox pathways. Metal resistance genes for tellurium, mercury, and copper were prevalent, alongside habitat-specific iron transport systems. Cross-feeding interactions mediated by manganese, reduced ferredoxin, and sulfur–metal integration suggested adaptive detoxification strategies. This study elucidates how deep-sea microbes partition metabolic roles and evolve metal resilience mechanisms across geographical niches. It also supports the view that microbial community structure and metabolic function across seamount regions are likely influenced by the geomorphological features of the seamounts. Full article
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19 pages, 5381 KiB  
Article
Complementary Rhizosphere Microbial Strategies Drive Functional Specialization in Coastal Halophyte Succession: Differential Adaptation of Suaeda glauca and Phragmites communis to Saline–Alkali Stress
by Hao Dai, Mingyun Jia, Jianhui Xue, Zhuangzhuang Liu, Dongqin Zhou, Zhaoqi Hou, Jinping Yu and Shipeng Lu
Microorganisms 2025, 13(6), 1399; https://doi.org/10.3390/microorganisms13061399 - 16 Jun 2025
Viewed by 527
Abstract
While rhizosphere microbiome functions in saline soils are well documented, complementary microbial strategies between pioneer and late-successional halophytes remain unexplored. Here, we used 16S rRNA sequencing and FAPROTAX functional prediction to compare the rhizosphere bacterial communities of two key halophytes—Suaeda glauca and [...] Read more.
While rhizosphere microbiome functions in saline soils are well documented, complementary microbial strategies between pioneer and late-successional halophytes remain unexplored. Here, we used 16S rRNA sequencing and FAPROTAX functional prediction to compare the rhizosphere bacterial communities of two key halophytes—Suaeda glauca and Phragmites communis—in a reclaimed coastal wetland. The results demonstrate that both plants significantly restructured microbial communities through convergent enrichment of stress-tolerant taxa (Firmicutes, Pseudomonas, Bacillus, and Planococcus) while suppressing sulfur-oxidizing bacteria (Sulfurovum and Thiobacillus). However, they exhibited distinct microbial specialization: S. glauca uniquely enriched organic-matter-degrading taxa (Promicromonospora and Zhihengliuella) and upregulated aromatic compound degradation (2.29%) and ureolysis (0.86%) according to FAPROTAX analysis, facilitating carbon mobilization in early successional stages. Notably, P. communis selectively recruited nitrogen-cycling Serratia, with increased nitrate respiration (3.51% in P. communis vs. 0.91% in S. glauca) function, reflecting its higher nitrogen demand. Environmental factors also diverged: S. glauca’s microbiome correlated with potassium and sodium, whereas P. communis responded to phosphorus and chloride. These findings uncover distinct microbial recruitment strategies by halophytes to combat saline stress—S. glaucaP. communis synergy through microbial carbon-nitrogen coupling—offering a template for consortia design in saline soil restoration. Full article
(This article belongs to the Section Plant Microbe Interactions)
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18 pages, 1914 KiB  
Review
Microbial Community Dynamics and Biogeochemical Cycling in Microplastic-Contaminated Sediment
by Xuanxuan Zhang, Dina Ding, Yinglin Liu, Zhiming Yao, Pingping Duan, Hanyu Yuan, Hanzhong Fan and Yanhui Dai
Nanomaterials 2025, 15(12), 902; https://doi.org/10.3390/nano15120902 - 11 Jun 2025
Viewed by 708
Abstract
Sediments are important repositories for microplastics (MPs) which exhibit higher microbial community richness and greater diversity than corresponding aqueous phases. Recently, the effects of MPs on microorganisms in sediments have received widespread attention. This review summarizes current knowledge on how MPs alter microbial [...] Read more.
Sediments are important repositories for microplastics (MPs) which exhibit higher microbial community richness and greater diversity than corresponding aqueous phases. Recently, the effects of MPs on microorganisms in sediments have received widespread attention. This review summarizes current knowledge on how MPs alter microbial diversity, composition, function, and biogeochemical cycling in sedimentary environments. The impacts of MPs on microorganisms in sediments can be affected by several factors, including MP type, the sedimentary environment, exposure time, and exposure concentration. Generally, biodegradable MPs cause more significant changes to the microbial community structure in sediments due to degradability and high bioavailability. Short-term exposure to MPs may enhance microbial diversity, and long-term exposure may lead to a reduction in diversity. High concentrations cause more serious impacts on microbial diversity than low concentrations. MPs mainly interfere with cycles of carbon, nitrogen, phosphorus, and sulfur in the sedimentary environment by changing microbial community structure, enzyme activity, and gene abundance. In conclusion, key research gaps are pinpointed, and future research directions presented. This review provides valuable insights into the health risks and ecological responses of MPs in sedimentary environments. Full article
(This article belongs to the Special Issue Environmental Fate, Transport and Effects of Nanoplastics)
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17 pages, 4881 KiB  
Article
Functionalization-Dependent Cytotoxicity of Silver Nanoparticles: A Comparative Study of Chlorhexidine and Metronidazole Conjugates
by Karol P. Steckiewicz, Monika Dmochowska, Elżbieta Megiel, Ewelina Barcińska and Iwona Inkielewicz-Stępniak
Biomolecules 2025, 15(6), 850; https://doi.org/10.3390/biom15060850 - 10 Jun 2025
Viewed by 799
Abstract
This study examines the cytotoxicity of two silver nanoparticle formulations—AgNPs conjugated with chlorhexidine (AgNPs-CHL) and AgNPs conjugated with polyethylene glycol and metronidazole (AgNPs-PEG-MET)—as examples of the surface functionalization of silver nanoparticles with drugs via sulfur–silver bonds and nitrogen–silver interactions. We previously reported the [...] Read more.
This study examines the cytotoxicity of two silver nanoparticle formulations—AgNPs conjugated with chlorhexidine (AgNPs-CHL) and AgNPs conjugated with polyethylene glycol and metronidazole (AgNPs-PEG-MET)—as examples of the surface functionalization of silver nanoparticles with drugs via sulfur–silver bonds and nitrogen–silver interactions. We previously reported the synthesis of these NPs and their efficiency in periodontitis treatment. Here, we analyze the relationships between the cytotoxic mechanisms of AgNPs and their surface chemistry. UV–Vis spectroscopy, dynamic light scattering (DLS), and scanning electron microscopy (SEM) with energy-dispersive X-ray spectroscopy (EDX) were used for physicochemical studies of the conjugates in two environments: aqueous solutions and commonly used cell culture media. Cytotoxicity was assessed in human fetal osteoblasts (hFOB 1.19) and human gingival fibroblasts (HGF-1) through BrdU and LDH assays, ROS detection, cell cycle analysis, apoptosis assays, and protein expression studies. AgNPs-CHL showed aggregation and increased hydrodynamic diameters in the culture medium, while AgNPs-PEG-MET remained stable. Both exhibited concentration-dependent cytotoxicity: AgNPs-CHL at 0.4–10 μg/mL and AgNPs-PEG-MET at 0.75–10 μg/mL. AgNPs-CHL, in which silver surface functionalization was realized via nitrogen–silver interactions, induced significant ROS generation, LDH release, and necroptosis, marked by increased RIP1, RIP3, and MLKL proteins. In the case of AgNPs-PEG-MET, where sulfur–silver bonds combined the drug via a PEG linker, they triggered apoptosis, as evidenced by elevated caspase-2 levels and flow cytometry. These findings highlight that the type of surface functionalization of silver nanoparticles significantly influences their physicochemical behavior and biological effects. Understanding these mechanisms is crucial in designing safer, more effective nanoparticle-based therapies for periodontal and other inflammatory conditions. Full article
(This article belongs to the Special Issue Metallic Nanoparticles: Biosynthesis and Therapeutic Potential)
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21 pages, 2648 KiB  
Article
Sustainable Soil Management: The Dynamic Impact of Combined Use of Crop Rotation and Fertilizers from Agri-Food and Sulfur Hydrocarbon Refining Processes Wastes
by Angela Maffia, Federica Marra, Mariateresa Oliva, Santo Battaglia, Carmelo Mallamaci and Adele Muscolo
Land 2025, 14(6), 1171; https://doi.org/10.3390/land14061171 - 29 May 2025
Viewed by 503
Abstract
Sustainable agriculture increasingly relies on strategies that improve soil fertility while reducing the environmental footprint of chemical inputs. The primary objective of this research was to disentangle the individual and combined effects of crop rotation and fertilization on soil quality. This study aimed [...] Read more.
Sustainable agriculture increasingly relies on strategies that improve soil fertility while reducing the environmental footprint of chemical inputs. The primary objective of this research was to disentangle the individual and combined effects of crop rotation and fertilization on soil quality. This study aimed to determine whether the effectiveness of fertilization was modified by rotational practices—exploring whether these interactions were additive, antagonistic, or synergistic. This study assessed the impact of two-year open-field crop rotations—broccoli–tomato and broccoli–pepper—combined with organic and mineral fertilization on soil chemical and biological properties. Treatments included sulfur bentonite enriched with orange waste (SBO), horse manure (HM), mineral fertilizer (NPK), and an unfertilized control (CTR). Soil samples were collected after each crop cycle and analyzed for enzymatic activities (fluorescein diacetate hydrolase, dehydrogenase, catalase), microbial biomass carbon (MBC), organic matter, total nitrogen, and macro- and micronutrient content. The results showed that organic amendments, particularly SBO and HM, significantly increased microbial activity, MBC, and nutrient availability compared to NPK and CTR. Organic treatments also led to a reduction in soil pH (−12%) and a more balanced ionic profile, enhancing soil biological fertility across both rotations. By contrast, the NPK treatments favored higher nitrate and chloride concentrations (3.5 and 4.6 mg * g−1 dw, respectively) but did not improve biological indicators. Improvements were more pronounced in the second crop cycle, suggesting the cumulative benefits of organic amendments over time. These findings highlight the potential of combining organic fertilization with crop rotation to enhance soil health and support long-term sustainability in horticultural systems. Full article
(This article belongs to the Special Issue Soil Ecological Risk Assessment Based on LULC)
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17 pages, 2269 KiB  
Article
Litter and Pruning Biomass in Mango Orchards: Quantification and Nutrient Analysis
by Alan Niscioli, Constancio A. Asis, Joanne Tilbrook, Dallas Anson, Danilo Guinto, Mila Bristow and David Rowlings
Sustainability 2025, 17(10), 4452; https://doi.org/10.3390/su17104452 - 14 May 2025
Viewed by 547
Abstract
Litter and pruning biomass are integral to nutrient cycling in the plant–soil ecosystem, contributing significantly to organic matter formation and humus development through decomposition and nutrient mineralization, which ultimately influence soil fertility and health. However, the litterfall dynamics in mango orchards are not [...] Read more.
Litter and pruning biomass are integral to nutrient cycling in the plant–soil ecosystem, contributing significantly to organic matter formation and humus development through decomposition and nutrient mineralization, which ultimately influence soil fertility and health. However, the litterfall dynamics in mango orchards are not well understood, and its contribution to nutrient cycling has seldom been measured. This study aimed to estimate litterfall and pruning biomass in mango orchards and assess the nutrient contents of various biomass components. Litter and pruning biomass samples were collected from four commercial mango orchards planted with Kensington Pride (‘KP’) and ‘B74’ (‘Calypso®’) cultivars in the Darwin and Katherine regions, using litter traps placed on the orchard floors. Samples were sorted (leaves, flowers, panicles, fruits, and branches) and analyzed for nutrient contents. Results showed that most biomass abscissions occurred between late June and August, spanning approximately 100 days involving floral induction phase, fruit set, and maturity. Leaves made up most of the abscised litter biomass, while branches were the primary component of pruning biomass. The overall ranking of biomass across both regions and orchards is as follows: leaves > branches > panicles > flowers > fruits. The carbon–nitrogen (C:N) ratio of litter pruning material ranged from 30 (flowers) to 139 (branches). On a hectare basis, litter and biomass inputs contained 1.2 t carbon (C), 21.2 kg nitrogen (N), 0.80 kg phosphorus (P), 4.9 kg potassium (K), 8.7 kg calcium (Ca), 2.0 kg magnesium (Mg), 1.1 kg sulfur (S), 15 g boron (B), 13.6 g copper (Cu), 99.3 g iron (Fe), 78.6 g manganese (Mn), and 28.6 g zinc (Zn). The results indicate that annual litterfall may contribute substantially to plant nutrient supply and soil health when incorporated into the soil to undergo decomposition. This study contributes to a better understanding of litter biomass, nutrient sources, and nutrient cycling in tropical mango production systems, offering insights that support accurate nutrient budgeting and help prevent over-fertilization. However, further research is needed to examine biomass accumulation under different pruning regimes, decomposition dynamics, microbial interactions, and broader ecological effects to understand litterfall’s role in promoting plant growth, enhancing soil health, and supporting sustainable mango production. Full article
(This article belongs to the Special Issue Sustainable Management: Plant, Biodiversity and Ecosystem)
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15 pages, 3412 KiB  
Article
Genomic Insights and Comparative Analysis of Novel Rhodopseudomonas Species: A Purple Non-Sulfur Bacterium Isolated from Latex Rubber Sheet Wastewater
by Chollachai Klaysubun, Nattarika Chaichana, Sirikan Suwannasin, Kamonnut Singkhamanan, Thunchanok Yaikhan, Duangporn Kantachote, Rattanaruji Pomwised, Monwadee Wonglapsuwan and Komwit Surachat
Life 2025, 15(5), 754; https://doi.org/10.3390/life15050754 - 8 May 2025
Viewed by 647
Abstract
Rhodopseudomonas is recognized for its versatile metabolic capabilities that enable it to effectively degrade pollutants and survive various environmental stresses. In this study, we conducted a genome analysis of Rhodopseudomonas sp. P1 to investigate its genetic potential for wastewater treatment processes. Phylogenetic and [...] Read more.
Rhodopseudomonas is recognized for its versatile metabolic capabilities that enable it to effectively degrade pollutants and survive various environmental stresses. In this study, we conducted a genome analysis of Rhodopseudomonas sp. P1 to investigate its genetic potential for wastewater treatment processes. Phylogenetic and genome-relatedness analyses confirmed that strain P1 is genetically distinct from other species within the Rhodopseudomonas genus, establishing it as a novel species. The genome sequences obtained and analyzed focused on genes related to carbon and nutrient removal, photosynthetic capabilities, nitrate and nitrite reduction, and the biodegradation of common wastewater pollutants. The identification of wastewater treatment-related genes followed an extensive review of the existing literature that helped in selecting genes involved in various wastewater treatment mechanisms. The genome of Rhodopseudomonas sp. P1 contains a diverse array of genes involved in carbon and nutrient cycling, pollutant biodegradation, and metal resistance, all of which are crucial for its survival in the complex wastewater environment. Specifically, the strain contains genes responsible for the denitrification, nitrogen fixation, sulfur cycling, and detoxification of toxic metals such as copper and arsenic. These findings highlight the potential application of Rhodopseudomonas sp. P1 in wastewater treatment, particularly in environments contaminated with organic pollutants and heavy metals. However, while the genomic features indicate significant promise, the practical implementation of Rhodopseudomonas sp. P1 in real-world wastewater treatment systems will require further investigation, optimization, and validation to fully harness its potential for sustainable and efficient wastewater treatment. Full article
(This article belongs to the Section Microbiology)
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14 pages, 1365 KiB  
Article
Hydrocracking of Various Vacuum Residues
by Dicho Stratiev
Fuels 2025, 6(2), 35; https://doi.org/10.3390/fuels6020035 - 7 May 2025
Cited by 1 | Viewed by 654
Abstract
The residue conversion processes, coking, visbreaking, and fluid catalytic cracking (FCC), have demonstrated that feedstock quality is the single factor that most affects process performance. While, for the FCC, it is known that the heavy oil conversion at a maximum gasoline yield point [...] Read more.
The residue conversion processes, coking, visbreaking, and fluid catalytic cracking (FCC), have demonstrated that feedstock quality is the single factor that most affects process performance. While, for the FCC, it is known that the heavy oil conversion at a maximum gasoline yield point can vary between 50 and 85 wt. %, for the vacuum residue hydrocracking, no reports have appeared yet to reveal the dependence of conversion on the quality of vacuum residue being hydrocracked. In order to search for such a dependence, eight vacuum residues derived from medium, heavy, and extra heavy crude oils have been hydrocracked in a laboratory unit at different reaction temperatures. The current study has witnessed that the vacuum residue hydrocracking obeys the same rule as that of the other residue conversion processes, confirming that the feedstock quality has a great influence on the process performance. A conversion variation between 45 and 85 wt. % can be observed when the sediment content in the hydrocracked atmospheric residue is within the acceptable limit, guaranteeing the planned cycle length. An intercriteria analysis was performed, and it revealed that the vacuum residue conversion has negative consonances with the contents of nitrogen and metals. Correlations were developed which predict the conversion at constant operating conditions within the uncertainty of conversion measurement of 1.7 wt. % and correlation coefficient of 0.964. The conversion at constant hydrocracked atmospheric residue (HCAR) sediment content was predicted with a correlation coefficient of 0.985. The correlations developed in this work disclosed that the higher the contents of metals, nitrogen, and asphaltenes, and the lower the content of sulfur, the lower the conversion in the hydrocracking process is. It was also shown that vacuum residues, which have the same reactivity (the same conversion at identical operating conditions), can indicate significant difference in the conversion at the same HCAR sediment content due to their diverse propensity to form sediments in the process of hydrocracking. Full article
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27 pages, 3565 KiB  
Article
Thiocapsa, Lutimaribacter, and Delftia Are Major Bacterial Taxa Facilitating the Coupling of Sulfur Oxidation and Nutrient Recycling in the Sulfide-Rich Isinuka Spring in South Africa
by Henry Joseph Oduor Ogola, Ramganesh Selvarajan, Somandla Ncube and Lawrence Madikizela
Biology 2025, 14(5), 503; https://doi.org/10.3390/biology14050503 - 5 May 2025
Viewed by 668
Abstract
Sulfur cycling is a fundamental biogeochemical process, yet its microbial underpinnings in environments like the Isinuka sulfur pool remain poorly understood. Using high-throughput Illumina 16S rRNA sequencing and PICRUSt-based functional inference, we analyzed bacterial diversity and metabolic potential in sediment and water samples. [...] Read more.
Sulfur cycling is a fundamental biogeochemical process, yet its microbial underpinnings in environments like the Isinuka sulfur pool remain poorly understood. Using high-throughput Illumina 16S rRNA sequencing and PICRUSt-based functional inference, we analyzed bacterial diversity and metabolic potential in sediment and water samples. Sediments, characterized by high sulfide/sulfate/thiosulfate, salinity, alkalinity, and organic matter content under anoxic conditions, supported diverse sulfur-reducing and organic-degrading bacteria, primarily from the Proteobacteria, Firmicutes, Bacteroidetes, and Actinobacteria phyla. In contrast, the anoxic water column harbored a less diverse community dominated by α-, γ-, and β-Proteobacteria, including Thiocapsa and Lutimaribacter. Sulfur oxidation genes (soxABCXYZ, sqr) were abundant in water, while sulfate reduction genes (dsrAB, aprAB, and sat/met3) were concentrated in sediments. Core microbiome analysis identified Thiocapsa, Lutimaribacter, and Delftia as functional keystones, integrating sulfur oxidation and nutrient recycling. Sediments supported dissimilatory sulfate-reducing bacteria (unclassified Desulfobacteraceae, Desulfosarcina, Desulfococcus, Desulfotignum, and Desulfobacter), while water samples were enriched in sulfur-oxidizing bacteria like Thiocapsa. Metabolic profiling revealed extensive sulfur, nitrogen, and carbon cycling pathways, with sulfur autotrophic denitrification and anoxygenic photosynthesis coupling sulfur–nitrogen and sulfur–carbon cycles. This study provides key theoretical insights into the microbial dynamics in sulfur-rich environments, highlighting their roles in biogeochemical cycling and potential applications in environmental management. Full article
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16 pages, 5233 KiB  
Article
Effects of Colony Breeding System and Nest Architecture on Soil Microbiome and Fertility in the Fungus-Growing Termite Macrotermes barneyi Light
by Jiachang Zhou, Wenquan Qin, Yang Zeng, Xin Huang, Jing Yuan, Yuting Yin, Paike Xu, Xiaohong Fan, Runfeng Zhang, Ganghua Li and Yinqi Zhang
Insects 2025, 16(5), 470; https://doi.org/10.3390/insects16050470 - 29 Apr 2025
Viewed by 674
Abstract
Macrotermes barneyi is a typical fungus-growing termite that forms both monogynous (single queen) and polygynous (multiple queen) colonies in nature. This species influences the local soil fertility in part by redistributing nutrients across the landscape in its habitats. However, how the colony structure [...] Read more.
Macrotermes barneyi is a typical fungus-growing termite that forms both monogynous (single queen) and polygynous (multiple queen) colonies in nature. This species influences the local soil fertility in part by redistributing nutrients across the landscape in its habitats. However, how the colony structure of M. barneyi affects nutrient cycling and microbial communities within the nest is not well understood. In this study, we compared the physicochemical properties and microbial communities across nest parts between monogynous and polygynous colonies of M. barneyi. Our results showed that the fungus garden is the most nutrient-rich part of the nest, with higher soil moisture, organic matter, ammonium nitrogen, nitrate nitrogen, available sulfur, available potassium, available silicon, and available boron than other nest parts. Notably, the fungus garden in monogynous colonies had higher nitrate nitrogen, available sulfur, and available silicon than those in the polygynous colonies. The microbial α-diversity in the fungus garden was lower than that in other parts of the nest. β-diversity analysis revealed a clear separation of microbial communities between monogynous and polygynous colonies across nest parts. Furthermore, the relative abundance of functional genes associated with “cell cycle control, cell division, and chromosome partitioning” was higher in the fungus garden of polygynous colonies compared to monogynous colonies. Our results suggest that the fungus garden plays a crucial role in maintaining colony stability in M. barneyi colonies. The rapid depletion of nutrients in the fungus garden to sustain the larger population in polygynous colonies likely influences microbial community dynamics and nutrient cycling. Full article
(This article belongs to the Section Social Insects and Apiculture)
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17 pages, 1253 KiB  
Review
Metagenome-Assembled Genomes (MAGs): Advances, Challenges, and Ecological Insights
by Salvador Mirete, Mercedes Sánchez-Costa, Jorge Díaz-Rullo, Carolina González de Figueras, Pablo Martínez-Rodríguez and José Eduardo González-Pastor
Microorganisms 2025, 13(5), 985; https://doi.org/10.3390/microorganisms13050985 - 25 Apr 2025
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Abstract
Metagenome-assembled genomes (MAGs) have revolutionized microbial ecology by enabling the genome-resolved study of uncultured microorganisms directly from environmental samples. By leveraging high-throughput sequencing, advanced assembly algorithms, and genome binning techniques, researchers can reconstruct microbial genomes without the need for cultivation. These methodological advances [...] Read more.
Metagenome-assembled genomes (MAGs) have revolutionized microbial ecology by enabling the genome-resolved study of uncultured microorganisms directly from environmental samples. By leveraging high-throughput sequencing, advanced assembly algorithms, and genome binning techniques, researchers can reconstruct microbial genomes without the need for cultivation. These methodological advances have expanded the known microbial diversity, revealing novel taxa and metabolic pathways involved in key biogeochemical cycles, including carbon, nitrogen, and sulfur transformations. MAG-based studies have identified microbial lineages form Archaea and Bacteria responsible for methane oxidation, carbon sequestration in marine sediments, ammonia oxidation, and sulfur metabolism, highlighting their critical roles in ecosystem stability. From a sustainability perspective, MAGs provide essential insights for climate change mitigation, sustainable agriculture, and bioremediation. The ability to characterize microbial communities in diverse environments, including soil, aquatic ecosystems, and extreme habitats, enhances biodiversity conservation and supports the development of microbial-based environmental management strategies. Despite these advancements, challenges such as assembly biases, incomplete metabolic reconstructions, and taxonomic uncertainties persist. Continued improvements in sequencing technologies, hybrid assembly approaches, and multi-omics integration will further refine MAG-based analyses. As methodologies advance, MAGs will remain a cornerstone for understanding microbial contributions to global biogeochemical processes and developing sustainable interventions for environmental resilience. Full article
(This article belongs to the Section Microbiomes)
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