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Keywords = mycorrhizae

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23 pages, 2768 KiB  
Article
Sustainable Cotton Production in Sicily: Yield Optimization Through Varietal Selection, Mycorrhizae, and Efficient Water Management
by Giuseppe Salvatore Vitale, Nicolò Iacuzzi, Noemi Tortorici, Giuseppe Indovino, Loris Franco, Carmelo Mosca, Antonio Giovino, Aurelio Scavo, Sara Lombardo, Teresa Tuttolomondo and Paolo Guarnaccia
Agronomy 2025, 15(8), 1892; https://doi.org/10.3390/agronomy15081892 - 6 Aug 2025
Abstract
This study explores the revival of cotton (Gossypium spp. L.) farming in Italy through sustainable practices, addressing economic and water-related challenges by integrating cultivar selection, arbuscular mycorrhizal fungi (AMF) inoculation, and deficit irrigation under organic farming. Field trials evaluated two widely grown [...] Read more.
This study explores the revival of cotton (Gossypium spp. L.) farming in Italy through sustainable practices, addressing economic and water-related challenges by integrating cultivar selection, arbuscular mycorrhizal fungi (AMF) inoculation, and deficit irrigation under organic farming. Field trials evaluated two widely grown Mediterranean cultivars (Armonia and ST-318) under three irrigation levels (I-100: 100% crop water requirement; I-70: 70%; I-30: 30%) across two Sicilian soil types (sandy loam vs. clay-rich). Under I-100, lint yields reached 0.99 t ha−1, while severe deficit (I-30) yielded only 0.40 t ha−1. However, moderate deficit (I-70) maintained 75–79% of full yields, proving a viable strategy. AMF inoculation significantly enhanced plant height (68.52 cm vs. 65.85 cm), boll number (+22.1%), and seed yield (+12.5%) (p < 0.001). Cultivar responses differed: Armonia performed better under water stress, while ST-318 thrived with full irrigation. Site 1, with higher organic matter, required 31–38% less water and achieved superior irrigation water productivity (1.43 kg m−3). Water stress also shortened phenological stages, allowing earlier harvests—important for avoiding autumn rains. These results highlight the potential of combining adaptive irrigation, resilient cultivars, and AMF to restore sustainable cotton production in the Mediterranean, emphasizing the importance of soil-specific management. Full article
(This article belongs to the Section Farming Sustainability)
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16 pages, 1313 KiB  
Article
Mycorrhizas Promote Total Flavonoid Levels in Trifoliate Orange by Accelerating the Flavonoid Biosynthetic Pathway to Reduce Oxidative Damage Under Drought
by Lei Liu and Hong-Na Mu
Horticulturae 2025, 11(8), 910; https://doi.org/10.3390/horticulturae11080910 (registering DOI) - 4 Aug 2025
Abstract
Flavonoids serve as crucial plant antioxidants in drought tolerance, yet their antioxidant regulatory mechanisms within mycorrhizal plants remain unclear. In this study, using a two-factor design, trifoliate orange (Poncirus trifoliata (L.) Raf.) seedlings in the four-to-five-leaf stage were either inoculated with Funneliformis [...] Read more.
Flavonoids serve as crucial plant antioxidants in drought tolerance, yet their antioxidant regulatory mechanisms within mycorrhizal plants remain unclear. In this study, using a two-factor design, trifoliate orange (Poncirus trifoliata (L.) Raf.) seedlings in the four-to-five-leaf stage were either inoculated with Funneliformis mosseae or not, and subjected to well-watered (70–75% of field maximum water-holding capacity) or drought stress (50–55% field maximum water-holding capacity) conditions for 10 weeks. Plant growth performance, photosynthetic physiology, leaf flavonoid content and their antioxidant capacity, reactive oxygen species levels, and activities and gene expression of key flavonoid biosynthesis enzymes were analyzed. Although drought stress significantly reduced root colonization and soil hyphal length, inoculation with F. mosseae consistently enhanced the biomass of leaves, stems, and roots, as well as root surface area and diameter, irrespective of soil moisture. Despite drought suppressing photosynthesis in mycorrhizal plants, F. mosseae substantially improved photosynthetic capacity (measured via gas exchange) and optimized photochemical efficiency (assessed by chlorophyll fluorescence) while reducing non-photochemical quenching (heat dissipation). Inoculation with F. mosseae elevated the total flavonoid content in leaves by 46.67% (well-watered) and 14.04% (drought), accompanied by significantly enhanced activities of key synthases such as phenylalanine ammonia-lyase (PAL), chalcone synthase (CHS), chalcone isomerase (CHI), 4-coumarate:coA ligase (4CL), and cinnamate 4-hydroxylase (C4H), with increases ranging from 16.90 to 117.42% under drought. Quantitative real-time PCR revealed that both mycorrhization and drought upregulated the expression of PtPAL1, PtCHI, and Pt4CL genes, with soil moisture critically modulating mycorrhizal regulatory effects. In vitro assays showed that flavonoid extracts scavenged radicals at rates of 30.07–41.60% in hydroxyl radical (•OH), 71.89–78.06% in superoxide radical anion (O2•−), and 49.97–74.75% in 2,2-diphenyl-1-picrylhydrazyl (DPPH). Mycorrhizal symbiosis enhanced the antioxidant capacity of flavonoids, resulting in higher scavenging rates of •OH (19.07%), O2•− (5.00%), and DPPH (31.81%) under drought. Inoculated plants displayed reduced hydrogen peroxide (19.77%), O2•− (23.90%), and malondialdehyde (17.36%) levels. This study concludes that mycorrhizae promote the level of total flavonoids in trifoliate orange by accelerating the flavonoid biosynthesis pathway, hence reducing oxidative damage under drought. Full article
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24 pages, 2419 KiB  
Review
Arbuscular Mycorrhizal Fungi in the Ecological Restoration of Tropical Forests: A Bibliometric Review
by Yajaira Arévalo, María Eugenia Avila-Salem, Paúl Loján, Narcisa Urgiles-Gómez, Darwin Pucha-Cofrep, Nikolay Aguirre and César Benavidez-Silva
Forests 2025, 16(8), 1266; https://doi.org/10.3390/f16081266 - 2 Aug 2025
Viewed by 207
Abstract
Arbuscular mycorrhizal fungi (AMF) play a vital role in the restoration of tropical forests by enhancing soil fertility, facilitating plant establishment, and improving ecosystem resilience. This study presents a comprehensive bibliometric analysis of global scientific output on AMF in the context of ecological [...] Read more.
Arbuscular mycorrhizal fungi (AMF) play a vital role in the restoration of tropical forests by enhancing soil fertility, facilitating plant establishment, and improving ecosystem resilience. This study presents a comprehensive bibliometric analysis of global scientific output on AMF in the context of ecological restoration, based on 3835 publications indexed in the Web of Science and Scopus databases from 2001 to 2024. An average annual growth rate of approximately 9.45% was observed, with contributions from 10,868 authors across 880 journals. The most prominent journals included Mycorrhiza (3.34%), New Phytologist (3.00%), and Applied Soil Ecology (2.79%). Thematically, dominant research areas encompassed soil–plant interactions, phytoremediation, biodiversity, and microbial ecology. Keyword co-occurrence analysis identified “arbuscular mycorrhizal fungi,” “diversity,” “soil,” and “plant growth” as core topics, while emerging topics such as rhizosphere interactions and responses to abiotic stress showed increasing prominence. Despite the expanding body of literature, key knowledge gaps remain, particularly concerning AMF–plant specificity, long-term restoration outcomes, and integration of microbial community dynamics. These findings offer critical insights into the development of AMF research and underscore its strategic importance in tropical forest restoration, providing a foundation for future studies and informing ecosystem management policies. Full article
(This article belongs to the Section Forest Biodiversity)
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16 pages, 3526 KiB  
Article
Effects of Glomus iranicum Inoculation on Growth and Nutrient Uptake in Potatoes Associated with Broad Beans Under Greenhouse Conditions
by Duglas Lenin Contreras-Pino, Samuel Pizarro, Patricia Verastegui-Martinez, Richard Solórzano-Acosta and Edilson J. Requena-Rojas
Microbiol. Res. 2025, 16(7), 164; https://doi.org/10.3390/microbiolres16070164 - 21 Jul 2025
Viewed by 360
Abstract
The rising global demand for food, including potatoes, necessitates increased crop production. To achieve higher yields, farmers frequently depend on regular applications of nitrogen and phosphate fertilizers. As people seek more environmentally friendly alternatives, biofertilizers are gaining popularity as a potential replacement for [...] Read more.
The rising global demand for food, including potatoes, necessitates increased crop production. To achieve higher yields, farmers frequently depend on regular applications of nitrogen and phosphate fertilizers. As people seek more environmentally friendly alternatives, biofertilizers are gaining popularity as a potential replacement for synthetic fertilizers. This study aimed to determine how Glomus iranicum affects the growth of potatoes (Solanum tuberosum L.) and the nutritional value of potato tubers when grown alongside broad beans (Vicia faba L.). An experiment was conducted using potatoes tested at five dosage levels of G. iranicum, ranging from 0 to 4 g, to see its impact on the plants and soil. Inoculation with G. iranicum produced variable results in associated potato and bean crops, with significant effects on some variables. In particular, inoculation with 3 g of G. iranicum produced an increase in plant height (24%), leaf dry weight (90%), and tuber dry weight (57%) of potatoes. Similarly, 4 g of G. iranicum produced an increase in the foliar fresh weight (115%), root length (124%), root fresh weight (159%), and root dry weight (243%) of broad beans compared to no inoculation. These findings suggest that G. iranicum could be a helpful biological tool in Andean crops to improve the productivity of potatoes associated with broad beans. This could potentially reduce the need for chemical fertilizers in these crops. Full article
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17 pages, 2706 KiB  
Article
Phylogenetic Determinants Behind the Ecological Traits of Relic Tree Family Juglandaceae, Their Root-Associated Symbionts, and Response to Climate Change
by Robin Wilgan
Int. J. Mol. Sci. 2025, 26(14), 6866; https://doi.org/10.3390/ijms26146866 - 17 Jul 2025
Viewed by 227
Abstract
Dual mycorrhizal symbiosis, i.e., the association with both arbuscular and ectomycorrhizal fungal symbionts, is an ambiguous phenomenon concurrently considered as common among various genetic lineages of trees and a result of bias in data analyses. Recent studies have shown that the ability to [...] Read more.
Dual mycorrhizal symbiosis, i.e., the association with both arbuscular and ectomycorrhizal fungal symbionts, is an ambiguous phenomenon concurrently considered as common among various genetic lineages of trees and a result of bias in data analyses. Recent studies have shown that the ability to form dual mycorrhizal associations is a distinguishing factor for the continental-scale invasion of alien tree species. However, the phylogenetic mechanisms that drive it remain unclear. In this study, all the evidence on root-associated symbionts of Juglandaceae from South and North America, Asia, and Europe was combined and re-analysed following current knowledge and modern molecular-based identification methods. The Juglandaceae family was revealed to represent a specific pattern of symbiotic interactions that are rare among deciduous trees and absent among conifers. Closely related phylogenetic lineages of trees usually share the same type of symbiosis, but Juglandaceae contains several possible ones concurrently. The hyperdiversity of root symbionts of Juglandaceae, unlike other tree families, was concurrently found in Central and North America, Asia, and Europe, indicating its phylogenetic determinants, which endured geographical isolation. However, for many Juglandaceae, including the invasive Juglans and Pterocarya species, this was never studied or was studied only with outdated methods. Further molecular research on root symbionts of Juglandaceae, providing long sequences and high taxonomic resolutions, is required to explain their ecological roles. Full article
(This article belongs to the Collection Advances in Molecular Plant Sciences)
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14 pages, 2403 KiB  
Article
Drought Stress Enhances Mycorrhizal Colonization in Rice Landraces Across Agroecological Zones of Far-West Nepal
by Urmila Dhami, Nabin Lamichhane, Sudan Bhandari, Gunanand Pant, Lal Bahadur Thapa, Chandra Prasad Pokhrel, Nikolaos Monokrousos and Ram Kailash Prasad Yadav
Soil Syst. 2025, 9(3), 72; https://doi.org/10.3390/soilsystems9030072 - 9 Jul 2025
Viewed by 309
Abstract
Mycorrhizal symbiosis in rice enhances drought adaptation but there are limited studies regarding the frequency and amplitude of mycorrhizae colonization in traditional landraces. This study investigates mycorrhizal colonization frequency (FMS) and intensity (IRS) in 12 rice landraces across three agroecological zones (Tarai, Inner-Tarai, [...] Read more.
Mycorrhizal symbiosis in rice enhances drought adaptation but there are limited studies regarding the frequency and amplitude of mycorrhizae colonization in traditional landraces. This study investigates mycorrhizal colonization frequency (FMS) and intensity (IRS) in 12 rice landraces across three agroecological zones (Tarai, Inner-Tarai, Mid-hill) of Far-West Nepal under drought stress. Field experiments exposed landraces to control, intermittent, and complete drought treatments, with soil properties and root colonization analyzed. Results revealed FMS and IRS variations driven by soil composition and genotype. Mid-hill soils (acidic, high organic matter) showed lower FMS but elevated IRS under drought, while neutral pH in Tarai and silt/clay-rich soils supported higher FMS. Sandy soil in Inner-Tarai also promoted FMS. Drought significantly increased IRS, particularly in Anjana and Sauthiyari (Tarai), Chiudi and Shanti (Inner-Tarai), and Chamade and Jhumke (Mid-hill), which exhibited IRS surges of 171–388%. These landraces demonstrated symbiotic resilience, linking mycorrhizal networks to enhanced nutrient/water uptake. Soil organic matter and nutrient levels amplified IRS responses, underscoring fertility’s role in adaptation. FMS ranged from 50 to 100%, and IRS 1.20–19.74%, with intensity being a stronger drought-tolerance indicator than frequency. The study highlights the conservation urgency for these landraces, as traditional varieties decline due to hybrid adoption. Their drought-inducible mycorrhizal symbiosis offers a sustainable strategy for climate-resilient rice production, emphasizing soil–genotype interactions in agroecological adaptation. Full article
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16 pages, 4549 KiB  
Article
Co-Application of Seaweed Extract (Solieria filiformis) and Silicon: Effect on Sporulation, Mycorrhizal Colonization, and Initial Growth of Mimosa caesalpiniaefolia
by Isaac Alves da Silva, José Lucas Sousa de Andrade, Francisco Luan Almeida Barbosa, Murilo de Sousa Almeida, Marjory Lima Holanda Araújo, Adijailton Jose de Souza, Ademir Sergio Ferreira Araujo, Arthur Prudêncio de Araujo Pereira and Kaio Gráculo Vieira Garcia
Microorganisms 2025, 13(7), 1581; https://doi.org/10.3390/microorganisms13071581 - 4 Jul 2025
Viewed by 532
Abstract
Seaweed extracts (SEs) and silicon (Si) are known to enhance plant growth under adverse conditions. However, their combined effects on arbuscular mycorrhizal fungi (AMF) are not yet fully understood. This study evaluated the effect of the co-application of an SE and Si on [...] Read more.
Seaweed extracts (SEs) and silicon (Si) are known to enhance plant growth under adverse conditions. However, their combined effects on arbuscular mycorrhizal fungi (AMF) are not yet fully understood. This study evaluated the effect of the co-application of an SE and Si on the AMF spore abundance, mycorrhizal colonization, and early growth of Mimosa caesalpiniaefolia. Plants were grown in a greenhouse for 70 days in soil with or without an SE (Solieria filiformis) and three Si levels (0, 150, and 300 mg kg−1). Growth parameters, AMF spore abundance, mycorrhizal colonization, and plant/soil chemical composition were assessed. SE and Si increased the plant height, stem diameter, number of leaves, and shoot dry mass, while higher Si levels reduced the root dry mass and length. Mycorrhizal colonization was highest (64%) at 150 mg kg−1 Si with SE, whereas AMF spore abundance decreased as Si increased. SE and 300 mg kg−1 Si raised the Si levels in the shoot, while root Si increased only at 300 mg kg−1 Si. Shoot Na increased at 300 mg kg−1 Si without SE, whereas K was highest at 150 mg kg−1 Si with SE. The soil pH, electrical conductivity, and Na increased at 300 mg kg−1 Si, while K and P decreased at this level without SE. These findings indicate that SE and Si co-application benefits early growth and may modulate mycorrhizal symbiosis, highlighting the importance of proper management to maximize plant and soil benefits. Full article
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16 pages, 2295 KiB  
Article
Research on the Response of Arbuscular Mycorrhizae Fungi to Grape Growth Under High Temperature Stress
by Panyu Jian, He Zhang, Xiaojun Xi, Xiangjing Yin, Pengpeng Sun, Qian Zha and Dejian Zhang
Int. J. Mol. Sci. 2025, 26(13), 6165; https://doi.org/10.3390/ijms26136165 - 26 Jun 2025
Viewed by 253
Abstract
Arbuscular mycorrhizae fungi (AMF) plays an important role in plants’ response to environmental stress, and the main environmental stress encountered in grape production is high temperature stress. This study aims to inoculate Funneliformis mosseae (A type of AMF) on grapes and investigate their [...] Read more.
Arbuscular mycorrhizae fungi (AMF) plays an important role in plants’ response to environmental stress, and the main environmental stress encountered in grape production is high temperature stress. This study aims to inoculate Funneliformis mosseae (A type of AMF) on grapes and investigate their tolerance to high temperature stress after inoculation. The results showed that AMF could infect grape roots, and the mycorrhizal infection rate was 20.78%. After inoculation with AMF, the growth of grape plants was significantly better than that in the non-inoculation group. Compared with the uninoculated group, the net photosynthetic rate, transpiration rate and stomatal conductance were higher in the AMF group, and the intercellular CO2 concentration was lower. After high temperature treatment, there was no significant difference in the content of hydrogen peroxide (H2O2) in grape leaves between the two experimental groups at each time, and the activities of superoxide dismutase (SOD), peroxidase (POD), catalase (CAT) and other enzymes showed great differences, especially after high temperature treatment for 6 h. The activities of SOD, POD and CAT in AMF group were significantly higher than those in uninoculated group. The content of malondialdehyde (MDA) in grape leaves of the two experimental groups had no significant difference between 0 h and 3 h after high temperature treatment, and the MDA content in the AMF group was significantly lower than that in the uninoculated group after 6 h of high temperature treatment. The contents of soluble sugar and soluble protein in the AMF group were higher than those in the uninoculated group at all time periods, especially after 6 h of high temperature treatment. In addition, we found that VvHSP70, VvHSP17.9, VvGLOS1, VvHSFA2 genes all responded to high temperature stress, but there was no significant difference between the AMF group and the uninoculated group. It can be seen from the above that AMF can significantly enhance the adaptability of grape plants to high temperature stress by improving photosynthetic efficiency, antioxidant enzyme activity, soluble sugar and soluble protein content, and reduce Malondialdehyde (MDA) content, which provides guidance and theoretical basis for grape production. Full article
(This article belongs to the Special Issue Crop Biotic and Abiotic Stress Tolerance: 4th Edition)
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17 pages, 4013 KiB  
Article
Sustainable Agrivoltaic Farming: The Role of Mycorrhiza in Promoting Mint Cultivation and High-Quality Essential Oil Production
by Bihter Çolak Esetlili, M. Tolga Esetlili, Kaan Emir and Murat Eröz
Sustainability 2025, 17(12), 5516; https://doi.org/10.3390/su17125516 - 16 Jun 2025
Viewed by 584
Abstract
Agriphotovoltaic (Agri-PV) systems are a dual-purpose solution for resolving land utilization conflicts through combining agricultural practices and photovoltaic power generation. However, the reduced light intensities and altered microclimatic conditions under PV modules may have negative effects on the productivity of crops. This study [...] Read more.
Agriphotovoltaic (Agri-PV) systems are a dual-purpose solution for resolving land utilization conflicts through combining agricultural practices and photovoltaic power generation. However, the reduced light intensities and altered microclimatic conditions under PV modules may have negative effects on the productivity of crops. This study investigated whether incorporating arbuscular mycorrhizal fungi (AMF) inoculation into Agri-PV systems could mitigate such limitations for mint cultivation (Mentha arvensis and Mentha × piperita). A field trial was conducted in Bandırma, Türkiye, where both mint species were grown under and between PV panels, with and without AMF. The photosynthetically active radiation (PAR), temperature, fresh biomass, nutrient uptake, and essential oil content were evaluated. PAR was reduced by more than 90% under panels, while air temperatures were 1.0–1.6 °C lower than those in the between-panel areas. AMF inoculation significantly improved the yield and quality. In Mentha arvensis, the fresh herb yield increased by 43.4% (from 10,620 to 15,230 kg ha−1), and the essential oil content reached 10.08% under between-panel mycorrhizal conditions. For Mentha × piperita, the highest menthol concentration (30.38%) was observed exclusively in between-panel plots with AMF. In contrast, the highest oil content (4.50%) was achieved under shaded, mycorrhizal conditions, indicating that both light exposure and microbial interactions shape biochemical responses. This is the first study to demonstrate the synergistic impact of AMF inoculation and agrivoltaic shading on essential oil crops. This paper presents a novel and sustainable model that enhances crop productivity and biochemical quality in solar-integrated agriculture. Full article
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20 pages, 3407 KiB  
Review
A Critical Review: Unearthing the Hidden Players—The Role of Extremophilic Fungi in Forest Ecosystems
by Muhammad Talal, Xiaoming Chen, Irfana Iqbal and Imran Ali
Forests 2025, 16(5), 855; https://doi.org/10.3390/f16050855 - 20 May 2025
Viewed by 479
Abstract
Often thought of as a mesic paradise, forest ecosystems are a mosaic of microhabitats with temporal oscillations that cause significant environmental stresses, providing habitats for extremophilic and extremotolerant fungi. Adapted to survive and thrive under conditions lethal to most mesophiles (e.g., extreme temperatures, [...] Read more.
Often thought of as a mesic paradise, forest ecosystems are a mosaic of microhabitats with temporal oscillations that cause significant environmental stresses, providing habitats for extremophilic and extremotolerant fungi. Adapted to survive and thrive under conditions lethal to most mesophiles (e.g., extreme temperatures, pH, water potential, radiation, salinity, nutrient scarcity, and pollutants), these species are increasingly recognized as vital yet underappreciated elements of forest biodiversity and function. This review examines the current understanding of the roles of extremophilic fungi in forests, scrutinizing their presence in these ecosystems with a critical eye. Particularly under severe environmental conditions, extremophilic fungi play a crucial role in forest ecosystems, as they significantly enhance decomposition and nutrient cycling, and foster mutualistic interactions with plants that increase stress resilience. This helps to maintain ecosystem stability. We examine the definition of “extreme” within forest settings, survey the known diversity and distribution of these fungi across various forest stress niches (cold climates, fire-affected areas, acidic soils, canopy surfaces, polluted sites), and delve into their possible ecological functions, including decomposition of recalcitrant matter, nutrient cycling under stress, interactions with plants (pathogenesis, endophytism, perhaps mycorrhizae), bioremediation, and contributions to soil formation. However, the review stresses significant methodological difficulties, information gaps, and field-based natural biases. We recommend overcoming cultural constraints, enhancing the functional annotation of “omics” data, and planning investigations that clarify the specific activities and interactions of these cryptic creatures within the forest matrix to further advance the field. Here, we demonstrate that moving beyond simple identification to a deeper understanding of function will enable us to more fully appreciate the value of extremophilic fungi in forest ecosystems, particularly in relation to environmental disturbances and climate change. Full article
(This article belongs to the Section Forest Ecology and Management)
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16 pages, 1878 KiB  
Article
Deterministic Processes Dominantly Shape Ectomycorrhizal Fungi Community Associated with Pinus tabuliformis, an Endemic Tree Species in China
by Yongjun Fan, Zhimin Yu, Jinyan Li, Xinyu Li, Lu Wang, Jiani Lu, Jianjun Ma and Yonglong Wang
Horticulturae 2025, 11(5), 545; https://doi.org/10.3390/horticulturae11050545 - 18 May 2025
Viewed by 391
Abstract
Pinus tabuliformis is a well-recognized woody mycorrhizae host plant growing in North China. EM fungi contribute to the host health and the stability of the forest ecosystem. However, ectomycorrhiae (EM) fungal community associated with this species is less documented. In this study, we [...] Read more.
Pinus tabuliformis is a well-recognized woody mycorrhizae host plant growing in North China. EM fungi contribute to the host health and the stability of the forest ecosystem. However, ectomycorrhiae (EM) fungal community associated with this species is less documented. In this study, we examined EM fungal diversity and composition of P. tabuliformis from three sites in Inner Mongolia, China by using Illumina MiSeq sequencing on the rDNA ITS2 region. Our results showed that a total of 105 EM fungal operational taxonomic units (OTUs) were identified from 15 composite root samples, and the dominant lineages were /suillus-rhizopogon, /tomentella-thelephora, /tricholoma, /amphinema-tylospora, /wilcoxina, /inocybe, and /Sebacina. A high proportion of unique EM fungal OTUs (33, 31.4% of total OTUs) were detected, and some abundant OTUs preferred to exist in specific sites. The composition of EM fungal communities was significantly different among the sites, with soil, climatic, and spatial variables being related to the community variations. The EM fungal community assembly was mainly driven by environmental factors in deterministic processes. These findings suggest that this endemic Pinaceae species in China also harbored a rich and distinctive EM fungal community and deterministic processes played more important roles than stochastic in shaping the symbiotic fungal community. Our study improves our understanding of EM fungal diversity and community structure from the perspective of a single host plant that has not been investigated exclusively before. Full article
(This article belongs to the Section Plant Pathology and Disease Management (PPDM))
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28 pages, 4104 KiB  
Article
Transcriptome Analysis Reveals the Molecular Mechanisms for Mycorrhiza-Enhanced Drought Tolerance in Maize by Regulating the Ca2+ Signaling Pathway
by Qiaoming Zhang, Wenjing Yang, Miaomiao Wang, Junwei Chen, Zhaoran Zhang, Yanan Wei, Qingshan Chang and Minggui Gong
J. Fungi 2025, 11(5), 375; https://doi.org/10.3390/jof11050375 - 14 May 2025
Cited by 1 | Viewed by 573
Abstract
With the continuous change of climate, drought stress has emerged as the primary constraint on crop growth, posing a significant threat to the stability of global grain reserves. Arbuscular mycorrhizal fungi (AMF), as a kind of widely distributed root endophytes, enhance the drought [...] Read more.
With the continuous change of climate, drought stress has emerged as the primary constraint on crop growth, posing a significant threat to the stability of global grain reserves. Arbuscular mycorrhizal fungi (AMF), as a kind of widely distributed root endophytes, enhance the drought tolerance of maize (Zea mays L.) through regulating the physiological and molecular responses. However, comprehensive transcriptome analysis to reveal the molecular mechanism of drought tolerance in the symbiotic process between AMF and maize is still limited. In the potted plant experiment, maizes inoculated with and without arbuscular mycorrhizal fungus Funneliformis mosseae were grown under well-watered (WW) or drought-stressed (DS) conditions. By using RNA-Seq and transcriptome analysis on maize roots and leaves, this work aimed to investigate the differential expressed genes (DEGs) related to the Ca2+ signaling pathway induced by AMF symbiosis under drought stress. Our findings indicated that F. mosseae inoculation resulted in a decrease in the net fluxes of Ca2+, while simultaneously elevating Ca2+ contents in the maize roots and leaves under well-watered or drought-stressed conditions. Notably, 189 DEGs were regulated not only by AMF symbiosis and drought stress, but also exhibited preferential expression in either leaves or roots. The annotation and enrichment of Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) showed that most of the DEGs were significantly enriched in Ca2+ signaling pathway genes, related to signal transduction, cellular process, and defense response. A high number of DEGs with this function (including calcineurin B-like protein (CBL), CBL-interacting protein kinase (CIPK), mitogen-activated protein kinase (MAPK), and calcium-dependent protein kinase (CDPK) receptor kinases) were upregulated-DEGs or downregulated-DEGs in F. mosseae-inoculated maizes under drought stress. Furthermore, some DEGs belong to transcription factor (TF) families, including bHLH ERF, and, MYB, were speculated to play key roles in improving the drought tolerance of maize. Based on the expression data and co-expression analysis between TF and Ca2+ signaling pathway genes, Whirly1 with CBL11, and BRI1-EMS-SUPPRESSOR 1 (BES1) with CBL10, CIPK24, CDPK1, CDPK14, CDPK19, and MAPK9 genes showed significant positive correlations, while B3 domain-containing transcription factors (B3 TFs) with MAPK1 and both CBL9 genes showed significant negative correlations in response to both F. mosseae inoculation and drought stress. The regulation of Ca2+ signaling pathways by AMF symbiosis was an important response mechanism of maize to improve their drought resistance. This study provides insightful perspectives on how AMF-induced modulation of gene expression within the Ca2+ signaling pathway can enhance the drought tolerance of mycorrhizal maize in the future. Full article
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14 pages, 1251 KiB  
Article
Role of Native Arbuscular Mycorrhizal Fungi in Modulating Nutrient Subcellular Distribution in Wheat Grown in Mn-Toxic Soil
by Jorge Miguel Silva Faria, Ana Paula Pinto, Pedro Barrulas, Isabel Brito and Dora M. Teixeira
J. Xenobiot. 2025, 15(3), 70; https://doi.org/10.3390/jox15030070 - 11 May 2025
Viewed by 459
Abstract
Heavy metal toxicity leads to impaired crop growth and reduced crop yields and product quality by disrupting plant nutrient uptake, inhibiting development, inducing oxidative stress, and causing cellular toxicity. Arbuscular mycorrhizal fungi (AMF) can play a crucial role in crops’ adaptation to manganese [...] Read more.
Heavy metal toxicity leads to impaired crop growth and reduced crop yields and product quality by disrupting plant nutrient uptake, inhibiting development, inducing oxidative stress, and causing cellular toxicity. Arbuscular mycorrhizal fungi (AMF) can play a crucial role in crops’ adaptation to manganese (Mn) toxicity by regulating nutrient uptake and altering subcellular compartmentalization. The present study examines the influence of intact extraradical mycelia (ERMs) from native AMF on wheat (Triticum aestivum) grown in Mn-toxic soil, with a focus on the tissue-specific and subcellular Ca, Mg, P, and Mn distribution. Wheat cultivated in soil pre-colonized using an intact ERM associated with Lolium rigidum or Ornithopus compressus exhibited enhanced growth and improved P contents. During the first week of growth, the Mn concentrations increased in the wheat’s roots and shoots, but Mn was subsequently reduced and sequestered within the cell wall. In contrast, in the absence of an intact ERM, the Mn accumulation in wheat followed an apparent continuous time-course pattern. AMF-mediated cell wall sequestration seems to contribute to Mn detoxification by limiting excessive cytoplasmic accumulation. Furthermore, AMF-driven changes in the element distribution suggest a dynamic response, wherein an early-stage nutrient uptake transitions into a long-term protective mechanism. These findings highlight the potential of AMF in mitigating Mn stress in crops, providing insights for sustainable agriculture and soil remediation strategies. Full article
(This article belongs to the Special Issue Plant Biostimulants - a Promising Tool in Organic Farming)
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16 pages, 7598 KiB  
Article
Combined Soil Inoculation with Mycorrhizae and Trichoderma Alleviates Nematode-Induced Decline in Mycorrhizal Diversity
by Fernanda Covacevich, Gabriela Fernandez-Gnecco, Verónica F. Consolo, Pablo L. Burges, Gonzalo F. Calo and Eduardo A. Mondino
Diversity 2025, 17(5), 334; https://doi.org/10.3390/d17050334 - 5 May 2025
Cited by 1 | Viewed by 654
Abstract
Arbuscular mycorrhizal fungi (AMF) and Trichoderma spp. (T) are known as plant-beneficial fungi effective against root-knot nematodes, but their interactions in the rhizosphere are not well understood. This study examined how Meloidogyne javanica influences AMF colonization and community diversity at the root-soil interface [...] Read more.
Arbuscular mycorrhizal fungi (AMF) and Trichoderma spp. (T) are known as plant-beneficial fungi effective against root-knot nematodes, but their interactions in the rhizosphere are not well understood. This study examined how Meloidogyne javanica influences AMF colonization and community diversity at the root-soil interface of tomato plants. A 60-day growth chamber experiment was conducted with tomato plants grown in non-sterile agricultural soil, either infected or not with M. javanica, that received a single inoculation with AMF or Trichoderma (strains T363 or TJ15), combined AMF + T inoculations, or no inoculation (Control). Both single and combined inoculations significantly reduced root galls, eggs, and soil nematode larvae. An AMF community analysis via single-strand conformation polymorphism of the D1 region of 28S rDNA gene (Glomeraceae family) revealed that M. javanica decreased AMF diversity and altered community structure, in plants single-inoculated with AMF. However, a combined inoculation with Trichoderma appears to prevent this reduction and maintain AMF diversity. While M. javanica reduced root mycorrhizal colonization, it did not affect Trichoderma abundance. These results suggest that Trichoderma may be more resilient to nematode infection, helping stabilize AMF communities and enhance biocontrol. Thus, combining AMF and Trichoderma inoculations could better preserve root health and improve biological control effectiveness against M. javanica. Full article
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20 pages, 4234 KiB  
Article
Impact of Farming System on Soil Microbial Communities Associated with Common Bean in a Region of Northern Spain
by Marta Suarez-Fernandez, Juan Jose Ferreira and Ana Campa
Plants 2025, 14(9), 1359; https://doi.org/10.3390/plants14091359 - 30 Apr 2025
Cited by 1 | Viewed by 548
Abstract
Agricultural soil microbiomes play a crucial role in the modification and maintenance of soil properties such as soil fertility, nutrient availability, and organic matter decomposition. This study assessed the influence of organic and conventional farming practices on soil microbiomes associated with common bean [...] Read more.
Agricultural soil microbiomes play a crucial role in the modification and maintenance of soil properties such as soil fertility, nutrient availability, and organic matter decomposition. This study assessed the influence of organic and conventional farming practices on soil microbiomes associated with common bean (Phaseolus vulgaris L.) at the field scale in Northern Spain. Metabarcoding techniques were used to compare both microbial communities. Alpha and beta diversity analyses revealed that organic soils supported richer fungal communities with a higher species evenness, whereas conventional soils were abundant in prokaryotes. Taxonomic assignment of the observed Operational Taxonomic Units (OTUs) identified a total of 1141 prokaryotic and 622 fungal taxa. Among these, 200 prokaryotic and 113 fungal OTUs showed significant differences in response to different farming practices. This classification allowed the establishment of a core microbial community associated with the common bean crop, comprising 594 prokaryotic OTUs classified into 11 phyla, and 256 fungal OTUs classified into 11 phyla. Functional analyses indicated that organic farming promoted a broader range of prokaryotic functions related to nitrogen metabolism, stronger positive interactions between fungi and bacteria, a higher abundance of beneficial microorganisms, such as biocontrol fungi and mycorrhizae, and greater overall microbial stability. In contrast, conventional soil showed a higher prevalence of potentially phytopathogenic fungi and more complex, competitive microbial interactions. These results highlight the effect of the farming system on the diversity and microbial composition of the soils associated with bean crops in Northern Spain. While further research in different climatic regions and crop systems is essential, these findings underscore the potential of organic farming to improve soil diversity and enhance microbial network interactions. Full article
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