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Crop Biotic and Abiotic Stress Tolerance: 4th Edition

A special issue of International Journal of Molecular Sciences (ISSN 1422-0067). This special issue belongs to the section "Molecular Plant Sciences".

Deadline for manuscript submissions: 20 October 2025 | Viewed by 2118

Special Issue Editor


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Guest Editor
College of Plant Science and Technology, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China
Interests: QTL/gene clones; genomic breeding; plant genetics; plant architecture
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Special Issue Information

Dear Colleagues,

Crop production is affected by biotic and abiotic stresses, such as drought, salinity, flooding, low or high temperatures, and pest and disease attacks. Therefore, QTL/gene clone and functional analyses of traits related to these stresses are very important for the development of stress-resilient and high-yield crops. Recent advances in functional genomics in crops will accelerate the breeding and genetic improvement of crops for biotic and abiotic stresses and yield-related traits.

For this Special Issue, we welcome novel research related to QTL/gene clones, especially for biotic and abiotic stresses, molecular marker development, marker-assisted selection, genome editing, and genetic transformation, and their advancement and application in crop improvement. We also welcome reviews on recent molecular and biotechnological advances and their potential applications in the genetic improvement of corn.

Prof. Dr. Fazhan Qiu
Guest Editor

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Keywords

  • biotic and abiotic stress tolerance
  • QTL/gene mapping and clones
  • gene editing
  • marker-assisted selection
  • genomic breeding

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Published Papers (4 papers)

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Research

16 pages, 2295 KB  
Article
Research on the Response of Arbuscular Mycorrhizae Fungi to Grape Growth Under High Temperature Stress
by Panyu Jian, He Zhang, Xiaojun Xi, Xiangjing Yin, Pengpeng Sun, Qian Zha and Dejian Zhang
Int. J. Mol. Sci. 2025, 26(13), 6165; https://doi.org/10.3390/ijms26136165 - 26 Jun 2025
Viewed by 308
Abstract
Arbuscular mycorrhizae fungi (AMF) plays an important role in plants’ response to environmental stress, and the main environmental stress encountered in grape production is high temperature stress. This study aims to inoculate Funneliformis mosseae (A type of AMF) on grapes and investigate their [...] Read more.
Arbuscular mycorrhizae fungi (AMF) plays an important role in plants’ response to environmental stress, and the main environmental stress encountered in grape production is high temperature stress. This study aims to inoculate Funneliformis mosseae (A type of AMF) on grapes and investigate their tolerance to high temperature stress after inoculation. The results showed that AMF could infect grape roots, and the mycorrhizal infection rate was 20.78%. After inoculation with AMF, the growth of grape plants was significantly better than that in the non-inoculation group. Compared with the uninoculated group, the net photosynthetic rate, transpiration rate and stomatal conductance were higher in the AMF group, and the intercellular CO2 concentration was lower. After high temperature treatment, there was no significant difference in the content of hydrogen peroxide (H2O2) in grape leaves between the two experimental groups at each time, and the activities of superoxide dismutase (SOD), peroxidase (POD), catalase (CAT) and other enzymes showed great differences, especially after high temperature treatment for 6 h. The activities of SOD, POD and CAT in AMF group were significantly higher than those in uninoculated group. The content of malondialdehyde (MDA) in grape leaves of the two experimental groups had no significant difference between 0 h and 3 h after high temperature treatment, and the MDA content in the AMF group was significantly lower than that in the uninoculated group after 6 h of high temperature treatment. The contents of soluble sugar and soluble protein in the AMF group were higher than those in the uninoculated group at all time periods, especially after 6 h of high temperature treatment. In addition, we found that VvHSP70, VvHSP17.9, VvGLOS1, VvHSFA2 genes all responded to high temperature stress, but there was no significant difference between the AMF group and the uninoculated group. It can be seen from the above that AMF can significantly enhance the adaptability of grape plants to high temperature stress by improving photosynthetic efficiency, antioxidant enzyme activity, soluble sugar and soluble protein content, and reduce Malondialdehyde (MDA) content, which provides guidance and theoretical basis for grape production. Full article
(This article belongs to the Special Issue Crop Biotic and Abiotic Stress Tolerance: 4th Edition)
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16 pages, 2956 KB  
Article
Development of Molecular Markers for Bacterial Leaf Streak Resistance Gene bls2 and Breeding of New Resistance Lines in Rice
by Jieyi Huang, Xuan Wei, Min Tang, Ziqiu Deng, Yi Lan and Fang Liu
Int. J. Mol. Sci. 2025, 26(11), 5264; https://doi.org/10.3390/ijms26115264 - 30 May 2025
Viewed by 410
Abstract
Bacterial leaf streak (BLS) is one of the internationally significant quarantine diseases in rice. Effectively utilizing BLS resistance genes from wild rice (Oryza rufipogon Griff.) to breed new varieties offers a fundamental solution for BLS control. This study focused on the fine mapping [...] Read more.
Bacterial leaf streak (BLS) is one of the internationally significant quarantine diseases in rice. Effectively utilizing BLS resistance genes from wild rice (Oryza rufipogon Griff.) to breed new varieties offers a fundamental solution for BLS control. This study focused on the fine mapping of the BLS resistance gene bls2 and the development of closely linked molecular markers for breeding BLS-resistant lines. Using a Guangxi common wild rice accession DY19 (carrying bls2) as the donor parent and the highly BLS-susceptible indica rice variety 9311 as the recipient parent, BLS-resistant rice lines were developed through multiple generations of backcrossing and selfing, incorporating molecular marker-assisted selection (MAS), single nucleotide polymorphism(SNP) chip genotyping, pathogen inoculation assays, and agronomic trait evaluation. The results showed that bls2 was delimited to a 113 kb interval between the molecular markers ID2 and ID5 on chromosome 2, with both markers exhibiting over 98% accuracy in detecting bls2. Four stable new lines carrying the bls2 segment were obtained in the BC5F4 generation. These four lines showed highly significant differences in BLS resistance compared with 9311, demonstrating moderate resistance or higher with average lesion lengths ranging from 0.69 to 1.26 cm. Importantly, no significant differences were observed between these resistant lines and 9311 in key agronomic traits, including plant height, number of effective panicles, panicle length, seed setting rate, grain length, grain width, length-to-width ratio, and 1000-grain weight. Collectively, two molecular markers closely linked to bls2 were developed, which can be effectively applied in MAS, and four new lines with significantly enhanced resistance to BLS and excellent agronomic traits were obtained. These findings provide technical support and core germplasm resources for BLS resistance breeding. Full article
(This article belongs to the Special Issue Crop Biotic and Abiotic Stress Tolerance: 4th Edition)
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18 pages, 14317 KB  
Article
Genome-Wide Identification of the Cation/Proton Antiporter (CPA) Gene Family and Expression Pattern Analysis Under Salt Stress in Winter Rapeseed (Brassica rapa L.)
by Chunyang Han, Li Ma, Xiaolei Tao, Yintao Lian, Junyan Wu, Abbas Muhammad Fahim, Yanxia Xu, Xianliang Zhang, Lijun Liu, Gang Yang, Yuanyuan Pu, Tingting Fan, Wangtian Wang and Wancang Sun
Int. J. Mol. Sci. 2025, 26(7), 3099; https://doi.org/10.3390/ijms26073099 - 27 Mar 2025
Cited by 1 | Viewed by 519
Abstract
The CPA gene family regulates ionic balance and pH homeostasis in cells, significantly contributing to plant stress tolerance. In this study, a total of 63 BrCPA gene family members were identified in the whole genome of Brassica rapa L. (B. rapa), [...] Read more.
The CPA gene family regulates ionic balance and pH homeostasis in cells, significantly contributing to plant stress tolerance. In this study, a total of 63 BrCPA gene family members were identified in the whole genome of Brassica rapa L. (B. rapa), and the three subfamily members were BrNHX (9), BrKEA (15), and BrCHX (39), respectively. The members of the BrCPA gene family encoded 303-1259 amino acids, with molecular weights in the range of 32,860.39~139,884.73 kDa, distributed on 10 chromosomes, and contained 17 conserved motifs, BrNHX and BraKEA, and the BrCPA gene family members had the same molecular weights on 10 chromosomes and contain 17 conserved motifs. The BrNHX and BraKEA subfamilies have more exons than the BrCHX subfamily. An analysis of promoter cis-acting elements in the BrCPA gene showed that members of this gene family contain TC-rich, LTR, MBS, and ARE stress response elements. In addition, transcriptome analysis revealed the expression of CPA genes in B. rapa under salt stress. The selected genes were verified by RT-qPCR. By detecting the Na+ and K+ flow rates in the root and chloroplast cells of salt-tolerant and salt-sensitive varieties after salt treatment, it was found that the rate of Na+ and K+ efflux from the root and chloroplast cells of salt-sensitive varieties was significantly higher than that of salt-tolerant varieties. This investigation marks the first systematic identification of the CPA gene family in B. rapa. This study further explores its expression patterns and the efflux rates of Na+ and K+ across salt-tolerant varieties, providing a theoretical basis for understanding the role of the CPA gene family in the salt stress response of B. rapa. Full article
(This article belongs to the Special Issue Crop Biotic and Abiotic Stress Tolerance: 4th Edition)
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19 pages, 12568 KB  
Article
A Starch Phosphorylase, ZmPHOH, Improves Photosynthetic Recovery from Short-Term Cold Exposure in Maize
by Yao Qin, Haiping Ding, Hailiang Zhao, Xueqing Zheng, Jing Wang, Ziyi Xiao, Yuanru Wang, Hongwei Wang, Yinggao Liu, Dianming Gong and Fazhan Qiu
Int. J. Mol. Sci. 2025, 26(4), 1727; https://doi.org/10.3390/ijms26041727 - 18 Feb 2025
Viewed by 579
Abstract
The photosynthetic system of maize (Zea mays) leaves is sensitive to low temperatures and suffers from irreversible damage induced by cold exposure, making cold stress a major factor limiting maize yield. Identifying genes that improve the recovery of photosynthesis from low [...] Read more.
The photosynthetic system of maize (Zea mays) leaves is sensitive to low temperatures and suffers from irreversible damage induced by cold exposure, making cold stress a major factor limiting maize yield. Identifying genes that improve the recovery of photosynthesis from low temperatures in maize will help enhance the cold tolerance of this crop and ensure stable yields. Here, we demonstrate the role of starch phosphorylase 2 (ZmPHOH) in promoting photosynthetic recovery from cold damage. Chlorotic leaf3 (chl3), a null mutant of ZmPHOH, which undergoes chlorophyll degradation and chlorosis earlier than under normal growth conditions after brief exposure to 8 °C and restoration to normal. We determined that chl3 plants could not repair the damage to their photosynthetic system caused by short-term cold exposure after the temperature returned to normal. Metabolome and transcriptome profiling indicated that the soluble sugar content in chl3 leaves was significantly increased after cold treatment and could not be catabolized promptly, leading to repression of photosynthetic gene expression. Our results reveal that ZmPHOH enhances post-cold photosynthetic recovery by promoting the decomposition and metabolism of soluble sugars, thereby regulating the low-temperature resilience in maize, which provides new insights into the chilling tolerance mechanism of maize. Full article
(This article belongs to the Special Issue Crop Biotic and Abiotic Stress Tolerance: 4th Edition)
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