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Keywords = mineral organic associations

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17 pages, 4238 KiB  
Article
Carbonatogenic Bacteria from Corallium rubrum Colonies
by Vincenzo Pasquale, Roberto Sandulli, Elena Chianese, Antonio Lettino, Maria Esther Sanz-Montero, Mazhar Ali Jarwar and Stefano Dumontet
Minerals 2025, 15(8), 839; https://doi.org/10.3390/min15080839 (registering DOI) - 7 Aug 2025
Abstract
The precipitation of minerals, in particular carbonates, is a widespread phenomenon in all ecosystems, where it assumes a high relevance both from a geological and biogeochemical standpoint. Most carbonate rocks are of biological origin and made in an aquatic environment. In particular, bioprecipitation [...] Read more.
The precipitation of minerals, in particular carbonates, is a widespread phenomenon in all ecosystems, where it assumes a high relevance both from a geological and biogeochemical standpoint. Most carbonate rocks are of biological origin and made in an aquatic environment. In particular, bioprecipitation of carbonates is believed to have started in the Mesoproterozoic Era, thanks to a process often driven by photosynthetic microorganisms. Nevertheless, an important contribution to carbonate precipitation is also due to the metabolic activity of heterotrophic bacteria, which is not restricted to specific taxonomic groups or to specific environments, making this process a ubiquitous phenomenon. In this framework, the relationship between carbonatogenic microorganisms and other living organisms assumes a particular interest. This study aims to isolate and identify the culturable heterotrophic bacterial component associated with the coenosarc of Corallium rubrum in order to evaluate the occurrence of strains able to precipitate carbonates. In particular, the study was focused on the identification and characterisation of bacterial strains isolated from a coral coenosarc showing a high carbonatogenic capacity under laboratory conditions. Samples of C. rubrum were taken in the coastal waters of three Italian regions. The concentration of the aerobic heterotrophic microflora colonising C. rubrum coenosarc samples spanned from 3 to 6∙106 CFU/cm2. This variation in microbial populations colonising the C. rubrum coenosarc, spanning over 6 orders of magnitude, is not mirrored by a corresponding variability in the colony morphotypes recorded, with the mean being 5.1 (±2.1 sd). Among these bacteria, the carbonatogenic predominant species was Staphylococcus equorum (93% of the isolates), whereas Staphylococcus xylosus and Shewanella sp. accounted only for 3% of isolates each. All these strains showed a remarkable capacity of precipitating calcium carbonate, in the form of calcite crystals organised radially as well crystalised spherulites (S. equorum) or coalescing spherulites (Shewanella sp.). S. xylosus only produced amorphous precipitates of calcium carbonate. All bacterial strains identified were positive both for the production of urease and carbon anhydrase in vitro at 30 °C. It seems that they potentially possess the major biochemical abilities conducive to Ca2+ precipitation, as they showed in vitro. In addition, all our carbonatogenic isolates were able to hydrolyse the phytic acid calcium salt and then were potentially able to induce precipitation of calcium phosphates also through such a mechanism. Full article
(This article belongs to the Special Issue Carbonate Petrology and Geochemistry, 2nd Edition)
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23 pages, 4361 KiB  
Article
Novel Visible Light-Driven Ho2InSbO7/Ag3PO4 Photocatalyst for Efficient Oxytetracycline Contaminant Degradation
by Jingfei Luan and Tiannan Zhao
Molecules 2025, 30(15), 3289; https://doi.org/10.3390/molecules30153289 - 6 Aug 2025
Abstract
In this study, a Z-scheme Ho2InSbO7/Ag3PO4 (HAO) heterojunction photocatalyst was successfully fabricated for the first time by ultrasound-assisted solvothermal method. The structural features, compositional components and morphological characteristics of the synthesized materials were thoroughly characterized by [...] Read more.
In this study, a Z-scheme Ho2InSbO7/Ag3PO4 (HAO) heterojunction photocatalyst was successfully fabricated for the first time by ultrasound-assisted solvothermal method. The structural features, compositional components and morphological characteristics of the synthesized materials were thoroughly characterized by a series of techniques, including X-ray diffraction, Fourier transform infrared spectroscopy, Raman spectrum, X-ray photoelectron spectroscopy, transmission electron microscopy, scanning electron microscopy and energy-dispersive X-ray spectroscopy. A comprehensive array of analytical techniques, including ultraviolet-visible diffuse reflectance absorption spectra, photoluminescence spectroscopy, time-resolved photoluminescence spectroscopy, photocurrent testing, electrochemical impedance spectroscopy, electron paramagnetic resonance, and ultraviolet photoelectron spectroscopy, was employed to systematically investigate the optical, chemical, and photoelectronic properties of the materials. Using oxytetracycline (OTC), a representative tetracycline antibiotic, as the target substrate, the photocatalytic activity of the HAO composite was assessed under visible light irradiation. Comparative analyses demonstrated that the photocatalytic degradation capability of the HAO composite surpassed those of its individual components. Notably, during the degradation process, the application of the HAO composite resulted in an impressive removal efficiency of 99.89% for OTC within a span of 95 min, along with a total organic carbon mineralization rate of 98.35%. This outstanding photocatalytic performance could be ascribed to the efficient Z-scheme electron-hole separation system occurring between Ho2InSbO7 and Ag3PO4. Moreover, the adaptability and stability of the HAO heterojunction were thoroughly validated. Through experiments involving the capture of reactive species and electron paramagnetic resonance analysis, the active species generated by HAO were identified as hydroxyl radicals (•OH), superoxide anions (•O2), and holes (h+). This identification provides valuable insights into the mechanisms and pathways associated with the photodegradation of OTC. In conclusion, this research not only elucidates the potential of HAO as an efficient Z-scheme heterojunction photocatalyst but also marks a significant contribution to the advancement of sustainable remediation strategies for OTC contamination. Full article
(This article belongs to the Special Issue Nanomaterials in Photochemical Devices: Advances and Applications)
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21 pages, 1538 KiB  
Article
Soil Fungal Activity and Microbial Response to Wildfire in a Dry Tropical Forest of Northern Colombia
by Eliana Martínez Mera, Ana Carolina Torregroza-Espinosa, Ana Cristina De la Parra-Guerra, Marielena Durán-Castiblanco, William Zapata-Herazo, Juan Sebastián Rodríguez-Rebolledo, Fernán Zabala-Sierra and David Alejandro Blanco Alvarez
Diversity 2025, 17(8), 546; https://doi.org/10.3390/d17080546 - 1 Aug 2025
Viewed by 193
Abstract
Wildfires can significantly alter soil physicochemical conditions and microbial communities in forest ecosystems. This study aimed to characterize the culturable soil fungal community and evaluate biological activity in Banco Totumo Bijibana, a protected dry tropical forest in Atlántico, Colombia, affected by a wildfire [...] Read more.
Wildfires can significantly alter soil physicochemical conditions and microbial communities in forest ecosystems. This study aimed to characterize the culturable soil fungal community and evaluate biological activity in Banco Totumo Bijibana, a protected dry tropical forest in Atlántico, Colombia, affected by a wildfire in 2014. Twenty soil samples were collected for microbiological (10 cm depth) and physicochemical (30 cm) analysis. Basal respiration was measured using Stotzky’s method, nitrogen mineralization via Rawls’ method, and fungal diversity through culture-based identification and colony-forming unit (CFU) counts. Diversity was assessed using Simpson, Shannon–Weaver, and ACE indices. The soils presented low organic matter (0.70%) and nitrogen content (0.035%), with reduced biological activity as indicated by basal respiration (0.12 kg C ha−1 d−1) and mineralized nitrogen (5.61 kg ha−1). Four fungal morphotypes, likely from the genus Aspergillus, were identified. Simpson index indicated moderate dominance, while Shannon–Weaver values reflected low diversity. Correlation analysis showed Aspergillus-3 was positively associated with moisture, whereas Aspergillus-4 correlated negatively with pH and sand content. The species accumulation curve reached an asymptote, suggesting an adequate sampling effort. Although no control site was included, the findings provide a baseline characterization of post-fire soil microbial structure and function in a dry tropical ecosystem. Full article
(This article belongs to the Section Microbial Diversity and Culture Collections)
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26 pages, 8845 KiB  
Article
Occurrence State and Genesis of Large Particle Marcasite in a Thick Coal Seam of the Zhundong Coalfield in Xinjiang
by Xue Wu, Ning Lü, Shuo Feng, Wenfeng Wang, Jijun Tian, Xin Li and Hayerhan Xadethan
Minerals 2025, 15(8), 816; https://doi.org/10.3390/min15080816 - 31 Jul 2025
Viewed by 194
Abstract
The Junggar Basin contains a large amount of coal resources and is an important coal production base in China. The coal seam in Zhundong coalfield has a large single-layer thickness and high content of inertinite, but large particle Fe-sulphide minerals are associated with [...] Read more.
The Junggar Basin contains a large amount of coal resources and is an important coal production base in China. The coal seam in Zhundong coalfield has a large single-layer thickness and high content of inertinite, but large particle Fe-sulphide minerals are associated with coal seams in some mining areas. A series of economic and environmental problems caused by the combustion of large-grained Fe-sulphide minerals in coal have seriously affected the economic, clean and efficient utilization of coal. In this paper, the ultra-thick coal seam of the Xishanyao formation in the Yihua open-pit mine of the Zhundong coalfield is taken as the research object. Through the analysis of coal quality, X-ray fluorescence spectrometer test of major elements in coal, inductively coupled plasma mass spectrometry test of trace elements, SEM-Raman identification of Fe-sulphide minerals in coal and LA-MC-ICP-MS test of sulfur isotope of marcasite, the coal quality characteristics, main and trace element characteristics, macro and micro occurrence characteristics of Fe-sulphide minerals and sulfur isotope characteristics of marcasite in the ultra-thick coal seam of the Xishanyao formation are tested. On this basis, the occurrence state and genesis of large particle Fe-sulphide minerals in the ultra-thick coal seam of the Xishanyao formation are clarified. The main results and understandings are as follows: (1) the occurrence state of Fe-sulphide minerals in extremely thick coal seams is clarified. The Fe-sulphide minerals in the extremely thick coal seam are mainly marcasite, and concentrated in the YH-2, YH-3, YH-8, YH-9, YH-14, YH-15 and YH-16 horizons. Macroscopically, Fe-sulphide minerals mainly occur in three forms: thin film Fe-sulphide minerals, nodular Fe-sulphide minerals, and disseminated Fe-sulphide minerals. Microscopically, they mainly occur in four forms: flake, block, spearhead, and crack filling. (2) The difference in sulfur isotope of marcasite was discussed, and the formation period of marcasite was preliminarily divided. The overall variation range of the δ34S value of marcasite is wide, and the extreme values are quite different. The polyflake marcasite was formed in the early stage of diagenesis and the δ34S value was negative, while the fissure filling marcasite was formed in the late stage of diagenesis and the δ34S value was positive. (3) The coal quality characteristics of the thick coal seam were analyzed. The organic components in the thick coal seam are mainly inertinite, and the inorganic components are mainly clay minerals and marcasite. (4) The difference between the element content in the thick coal seam of the Zhundong coalfield and the average element content of Chinese coal was compared. The major element oxides in the thick coal seam are mainly CaO and MgO, followed by SiO2, Al2O3, Fe2O3 and Na2O. Li, Ga, Ba, U and Th are enriched in trace elements. (5) The coal-accumulating environment characteristics of the extremely thick coal seam are revealed. The whole thick coal seam is formed in an acidic oxidation environment, and the horizon with Fe-sulphide minerals is in an acidic reduction environment. The acidic reduction environment is conducive to the formation of marcasite and is not conducive to the formation of pyrite. (6) There are many matrix vitrinite, inertinite content, clay content, and terrigenous debris in the extremely thick coal seam. The good supply of peat swamp, suitable reduction environment and pH value, as well as groundwater leaching and infiltration, together cause the occurrence of large-grained Fe-sulphide minerals in the extremely thick coal seam of the Xishanyao formation in the Zhundong coalfield. Full article
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16 pages, 1101 KiB  
Article
Nutritional Characterization of Fruits from Three African Plant Species: Dialium guineense Willd, Parkia biglobosa Jacq. and Andansonia digitata L.
by Manuela Lageiro, Jaime Fernandes, Ana C. Marques, Manuela Simões and Ana Rita F. Coelho
Plants 2025, 14(15), 2344; https://doi.org/10.3390/plants14152344 - 29 Jul 2025
Viewed by 280
Abstract
Dialium guineense (velvet tamarind), Parkia biglobosa Jacq. (African locust bean) and Adanosonia digitata L. (baobab) are fruits from African plants whose nutritional potential remains poorly characterised. As such, their pulps and seeds were analysed for colour (CIELab system), moisture, ash, protein, fat, soluble [...] Read more.
Dialium guineense (velvet tamarind), Parkia biglobosa Jacq. (African locust bean) and Adanosonia digitata L. (baobab) are fruits from African plants whose nutritional potential remains poorly characterised. As such, their pulps and seeds were analysed for colour (CIELab system), moisture, ash, protein, fat, soluble and insoluble dietary fibre, free sugars (HPLC-RI), organic acids (HPLC-PDA), macro and microelements (XRF analyser) and amygdalin (HPLC-PDA). The colours of their pulps differed considerable (ΔE > 38 between the velvet tamarind and African locust bean) and the moisture content was lower in seeds (about 7%) compared to pulps (9–13%). Seeds were more concentrated in protein (20–28%) and fat (5–22%), whereas pulps were richer in sugar (1–12%). African locust bean pulp was the sweetest (39% total sugar), while baobab pulp contained the highest soluble fibre (>30%) and citric acid (3.2%), and velvet tamarind pulp was distinguished by its tartaric acid content (3.4%). Seeds of the African fruits presented higher Ca, P, S and Fe contents, whereas pulps had higher K content. No amygdalin (<6.34 mg per 100 g of dry weight) or toxic heavy metal contents were detected. The PCA segregated samples by pulp and seed and the PC1 explains the sugar and moisture of the pulps, while protein, fat and minerals are associated with the seeds. These data confirm that African fruit pulps and seeds have distinct functional profiles, are safe for food use and can be consumed, which is important for efforts to promote the conservation of these tropical plant species. Full article
(This article belongs to the Section Plant Nutrition)
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21 pages, 2522 KiB  
Article
Long-Term Flat-Film Hole-Sowing Increases Soil Organic Carbon Stocks and Resilience Under Future Climate Change Scenarios
by Hanbing Cao, Xinru Chen, Yunqi Luo, Zhanxiang Wu, Chengjiao Duan, Mengru Cao, Jorge L. Mazza Rodrigues, Junyu Xie and Tingliang Li
Agronomy 2025, 15(8), 1808; https://doi.org/10.3390/agronomy15081808 - 26 Jul 2025
Viewed by 302
Abstract
Analyzing the soil organic carbon (SOC) stock in dryland areas of southern Shanxi, particularly under the influence of fertilization and mulching conditions, is crucial for enhancing soil fertility and crop productivity and understanding the SOC pool’s resilience to future climate change scenarios in [...] Read more.
Analyzing the soil organic carbon (SOC) stock in dryland areas of southern Shanxi, particularly under the influence of fertilization and mulching conditions, is crucial for enhancing soil fertility and crop productivity and understanding the SOC pool’s resilience to future climate change scenarios in the region. In a long-term experimental site located in Hongtong County, Shanxi Province, soil samples were collected from the 0–100 cm depth over a nine-year period. These samples were analyzed to evaluate the impact of five treatments: no fertilization and no mulching (CK), conventional farming practices (FP), nitrogen reduction and controlled fertilization (MF), nitrogen reduction and controlled fertilization with ridge-film furrow-sowing (RF), and nitrogen reduction and controlled fertilization with flat-film hole-sowing (FH). The average annual yield of wheat grain, SOC stock, water-soluble organic carbon (WSOC), particulate organic carbon (POC), light fraction organic carbon (LFOC), mineral-associated organic carbon (MOC), and heavy fraction organic carbon (HFOC) stocks were measured. The results revealed that the FH treatment not only significantly increased wheat grain yield but also significantly elevated the SOC stock by 23.71% at the 0–100 cm depth compared to CK. Furthermore, this treatment significantly enhanced the POC, LFOC, and MOC stocks by 106.43–292.98%, 36.93–158.73%, and 17.83–81.55%, respectively, within 0–80 cm. However, it also significantly decreased the WSOC stock by 34.32–42.81% within the same soil layer and the HFOC stock by 72.05–101.51% between the 20 and 100 cm depth. Notably, the SOC stock at the 0–100 cm depth was primarily influenced by the HFOC. Utilizing the DNDC (denitrification–decomposition) model, we found that future temperature increases are detrimental to SOC sequestration in dryland areas, whereas reduced rainfall is beneficial. The simulation results indicated that in a warmer climate, a 2 °C temperature increase would result in a SOC stock decrease of 0.77 to 1.01 t·ha−1 compared to a 1 °C increase scenario. Conversely, under conditions of reduced precipitation, a 20% rainfall reduction would lead to a SOC stock increase of 1.53% to 3.42% compared to a 10% decrease scenario. In conclusion, the nitrogen reduction and controlled fertilization with flat-film hole-sowing (FH) treatment emerged as the most effective practice for increasing SOC sequestration in dryland areas by enhancing the HFOC stock. This treatment also fortified the SOC pool’s capacity to withstand future climate change, thereby serving as the optimal approach for concurrently enhancing production and fertility in this region. Full article
(This article belongs to the Section Agroecology Innovation: Achieving System Resilience)
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21 pages, 1980 KiB  
Article
Organic Manure with Chemical Fertilizers Improves Rice Productivity and Decreases N2O Emissions by Increasing Soil Nitrogen Sequestration
by Yiren Liu, Jingshang Xiao, Xianjin Lan, Jianhua Ji, Hongqian Hou, Liumeng Chen and Zhenzhen Lv
Agronomy 2025, 15(8), 1783; https://doi.org/10.3390/agronomy15081783 - 24 Jul 2025
Viewed by 233
Abstract
Soil organic nitrogen (SON) positively influences crop productivity, greenhouse gas (GHG) emissions, and sustained nitrogen (N) supply. Herein, we observed the effect of different treatments; no fertilizers (CK), chemical fertilizers (nitrogen, phosphorus, and potassium (NPK)), organic manure, and NPK + OM (NPKOM). This [...] Read more.
Soil organic nitrogen (SON) positively influences crop productivity, greenhouse gas (GHG) emissions, and sustained nitrogen (N) supply. Herein, we observed the effect of different treatments; no fertilizers (CK), chemical fertilizers (nitrogen, phosphorus, and potassium (NPK)), organic manure, and NPK + OM (NPKOM). This study was performed in a randomized complete block design (RCBD) with three replications. The results indicated that NPKOM treatment significantly decreased the nitrous oxide (N2O) emissions by 19.97% and 17.47% compared to NPK in both years. This was linked with improved soil nutrient availability, soil organic carbon, soil organic nitrogen (SON) storage (10.06% and 12.38%), SON sequestration (150% and 140%), increased soil particulate (44.11% and 44%), and mineral-associated organic N (26.98% and 26.47%) availability. Furthermore, NPKOM also enhanced nitrate reductase (NR: 130% and 112%), glutamine synthetase (GS: 93% and 88%), sucrose phosphate synthase (SPS: 79% and 98%), SSs (synthetic direction; 57% and 50%), and decreased SSs activity in the decomposition direction (18% and 21%). This, in turn, inhibited the decomposition of sucrase and enhanced starch conversion into carbohydrates, thus leading to an increase in rice yield and a decrease in N2O emissions. All fertilizations, particularly NPKOM, significantly enhanced grain protein contents by increasing N uptake and its availability. Therefore, NPKOM is an effective practice to enhance rice productivity, and SON sequestration and mitigate the N2O emissions and subsequent climate change. Full article
(This article belongs to the Section Soil and Plant Nutrition)
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24 pages, 3436 KiB  
Article
Peculiarities of 222Radon and 238Uranium Behavior in Mineral Waters of Highland Terrains
by George Chelnokov, Vasilii Lavrushin, Natalya Kharitonova, Andrey Pavlov and Farid Salikhov
Water 2025, 17(15), 2211; https://doi.org/10.3390/w17152211 - 24 Jul 2025
Viewed by 202
Abstract
Mineral waters from two tectonically active mountain systems within the Alpine-Himalayan orogenic belt, the Pamir and the Greater Caucasus (Elbrus region), were analyzed for 222Rn activity and 238U concentrations to establish correlations with geological conditions, physicochemical characteristics of water, and to [...] Read more.
Mineral waters from two tectonically active mountain systems within the Alpine-Himalayan orogenic belt, the Pamir and the Greater Caucasus (Elbrus region), were analyzed for 222Rn activity and 238U concentrations to establish correlations with geological conditions, physicochemical characteristics of water, and to assess the potential health risk associated with 238U and 222Rn. It was found that in mineral waters of the Pamir, the concentrations of 238U (0.004–13.3 µg/L) and activity of 222Rn (8–130 Bq/L) are higher than in the Elbrus area: 0.04–3.74 µg/L and 6–33 Bq/L, respectively. Results indicate that uranium mobility in water is strongly influenced by T, pH, and Eh, but is less affected by the age of host rocks or springs′ elevation, whereas radon activity in waters depends on the age of rocks, spring elevation, 238U content, and values of δ18O and δ2H in water. This study reveals fundamental geological distinctions governing uranium and radon sources in the mineral waters of these regions. Isotopic evidence (222Rn and 3He/4He) demonstrates crustal radon sources prevail in Pamir, whereas the Elbrus system suggests mantle-derived components. The U concentrations do not exceed 30 µg/L, and most water samples (94%) showed 222Rn activities below 100 Bq/L, complying with the drinking water exposure limits recommended by the World Health Organization and European Union Directive. However, in intermountain depressions of the Pamirs, at low absolute elevations (~2300 m), radon concentrations in water can increase significantly, which requires special attention and study. Full article
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19 pages, 1766 KiB  
Article
A Simple Model to Predict the Temporal Nitrogen Saturation Point of a Jack Pine (Pinus banksiana L.) Forest
by Andrew M. McDonough and Shaun A. Watmough
Forests 2025, 16(7), 1195; https://doi.org/10.3390/f16071195 - 19 Jul 2025
Viewed by 310
Abstract
Dry jack pine forests exposed to elevated nitrogen (N) deposition do not necessarily exhibit traditional N saturation responses. Using empirical results from a five year above-canopy N deposition experiment, a simple nitrogen (N) saturation model was developed for jack pine (Pinus banksiana [...] Read more.
Dry jack pine forests exposed to elevated nitrogen (N) deposition do not necessarily exhibit traditional N saturation responses. Using empirical results from a five year above-canopy N deposition experiment, a simple nitrogen (N) saturation model was developed for jack pine (Pinus banksiana Lamb.) forests dominated by cryptogams. For the model, a series of differential equations using empirically derived rate constants (k) were applied to estimate changes in net N pools in biotic and abiotic components across a narrow N deposition gradient (0, 5, 10, 15, 20, and 25 kg N ha−1 yr−1). Critical soil C:N ratios were used as the model limit to signify saturation. We explored the saturation response time by priming the model to mineralize approximately one percent of the soil N pool after the critical C:N ratio was reached. A portion of this pool was made available to jack pine trees. Nitrogen leaching below the rooting zone occurred when the mass of N mineralized from the soil organic- and A horizon layers exceeded the theoretical mass required by jack pine, driving the mineral soil below the critical C:N ratio. The model suggests that N leaching below the rooting zone could happen around 50 (1% LFH N mineralization) years after the onset of deposition at 25 kg N ha−1 yr−1. In contrast, N deposition rates ≤ 20 kg N ha−1 yr−1 are not expected to be associated with N leaching over this timeframe. The modeled results are consistent with empirical surveys of jack pine forests exposed to elevated N deposition for several decades. Full article
(This article belongs to the Section Forest Health)
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18 pages, 2570 KiB  
Article
Applicability of Visible–Near-Infrared Spectroscopy to Predicting Water Retention in Japanese Forest Soils
by Rando Sekiguchi, Tatsuya Tsurita, Masahiro Kobayashi and Akihiro Imaya
Forests 2025, 16(7), 1182; https://doi.org/10.3390/f16071182 - 17 Jul 2025
Viewed by 267
Abstract
This study assessed the applicability of visible–near-infrared (vis-NIR) spectroscopy to predicting the water retention characteristics of forest soils in Japan, which vary widely owing to the presence of volcanic ash. Soil samples were collected from 34 sites, and the volumetric water content was [...] Read more.
This study assessed the applicability of visible–near-infrared (vis-NIR) spectroscopy to predicting the water retention characteristics of forest soils in Japan, which vary widely owing to the presence of volcanic ash. Soil samples were collected from 34 sites, and the volumetric water content was measured at eight levels of matric suction. Spectral data were processed by using the second derivative of the absorbance, and regression models were developed by using explainable boosting machine (EBM), which is an interpretable machine learning method. Although the prediction accuracy was limited owing to the small sample size and soil heterogeneity, EBM performed better under saturated conditions (R2 = 0.30), which suggests that vis-NIR spectroscopy can capture water-related features, especially under wet conditions. Importance analysis consistently selected wavelengths that were associated with organic matter and hydrated clay minerals. The important wavelengths clearly shifted from free-water bands in wet soils to mineral-related absorption bands in dry soils. These findings highlight the potential of coupling vis-NIR spectroscopy with interpretable models like EBM for estimating the hydraulic properties of forest soils. Improved accuracy is expected with larger datasets and stratified models by soil type, which can facilitate more efficient soil monitoring in forests. Full article
(This article belongs to the Section Forest Soil)
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18 pages, 1503 KiB  
Article
Methodology to Determine the Associative Potential of Small-Scale Mining Communities
by Oscar Jaime Restrepo-Baena, Sara Pérez-Zapata, María Margarita Gamarra, Jorge Iván Tobón and Gustavo Viana
Mining 2025, 5(3), 46; https://doi.org/10.3390/mining5030046 - 16 Jul 2025
Viewed by 369
Abstract
This study presents a methodology developed in collaboration with the Colombian National Mining Agency, aimed at enhancing the economic and productive activity of small-scale miners in Colombia through the promotion of associativity. Despite persistent challenges in the formalization and sustainable development of the [...] Read more.
This study presents a methodology developed in collaboration with the Colombian National Mining Agency, aimed at enhancing the economic and productive activity of small-scale miners in Colombia through the promotion of associativity. Despite persistent challenges in the formalization and sustainable development of the artisanal mining sector, fostering associative models offers a pathway towards a more sustainable mining industry, aligned with current national policies. The proposed roadmap, designed to achieve this objective, is divided into three sequential phases. The first, the Baseline Survey, focuses on comprehensively understanding the initial socio-economic and operational conditions of mining communities. This is followed by Participatory Strategic Planning, which involves projecting the long-term role and development of mining associative figures. Finally, the Annual Operational Planning and Execution phase concentrates on the concrete implementation of activities designed to achieve sustainable organizational goals. During the design and initial implementation of this roadmap, we found that continuous support and tailored training programs are essential for mining communities. These programs are critical for fostering the development of collective skills and strengthening community ties within mining organizations. The findings highlight that by strengthening collective capabilities and community ties, mining organizations can enhance their self-management capacities and significantly contribute to the economic development of their regions. This approach addresses key challenges in the sector by promoting a more organized and resilient operational framework. The implementation of a participatory methodology, coupled with specific organizational strengthening programs, coordinated execution, and continuous monitoring, provides a viable route towards a more sustainable and formalized small-scale mining sector in Colombia. This roadmap offers a practical framework for fostering self-managed and economically contributing mining organizations. Full article
(This article belongs to the Special Issue Envisioning the Future of Mining, 2nd Edition)
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22 pages, 826 KiB  
Review
Inactivation of Emerging Opportunistic Foodborne Pathogens Cronobacter spp. and Arcobacter spp. on Fresh Fruit and Vegetable Products: Effects of Emerging Chemical and Physical Methods in Model and Real Food Systems—A Review
by Junior Bernardo Molina-Hernandez, Beatrice Cellini, Fatemeh Shanbeh Zadeh, Lucia Vannini, Pietro Rocculi and Silvia Tappi
Foods 2025, 14(14), 2463; https://doi.org/10.3390/foods14142463 - 14 Jul 2025
Viewed by 711
Abstract
The consumption of fresh fruit and vegetables is essential for a healthy diet as they contain a diverse composition of vitamins, minerals, fibre, and bioactive compounds. However, cross-contamination during harvest and post-harvest poses a high risk of microbial contamination. Therefore, handling fruit and [...] Read more.
The consumption of fresh fruit and vegetables is essential for a healthy diet as they contain a diverse composition of vitamins, minerals, fibre, and bioactive compounds. However, cross-contamination during harvest and post-harvest poses a high risk of microbial contamination. Therefore, handling fruit and vegetables during processing and contact with wet equipment and utensil surfaces is an ideal environment for microbial contamination and foodborne illness. Nevertheless, less attention has been paid to some emerging pathogens that are now increasingly recognised as transmissible to humans through contaminated fruit and vegetables, such as Arcobacter and Cronobacter species in various products, which are the main risk in fruit and vegetables. Cronobacter and Arcobacter spp. are recognised food-safety hazards because they pose a risk of foodborne disease, especially in vulnerable groups such as newborns and immunocompromised individuals. Cronobacter spp. have been linked to severe infant conditions—notably meningitis and sepsis—most often traced to contaminated powdered infant formula. Although Arcobacter spp. have been less extensively studied, they have also been associated with foodborne disease, chiefly from dairy products and meat. With this in mind, this review provides an overview of the main chemical and physical sanitisation methods in terms of their ability to reduce the contamination of fresh fruit and vegetable products caused by two emerging pathogens: Arcobacter and Cronobacter. Emerging chemical (organic acid compounds, extracts, and essential oils) and physical methods (combination of UV-C with electrolysed water, ultrasound, and cold atmospheric plasma) offer innovative and environmentally friendly alternatives to traditional approaches. These methods often utilise natural materials, less toxic solvents, and novel techniques, resulting in more sustainable processes compared with traditional methods that may use harsh chemicals and environmentally harmful processes. This review provides the fruit and vegetable industry with a general overview of possible decontamination alternatives to develop optimal and efficient processes that ensure food safety. Full article
(This article belongs to the Section Food Engineering and Technology)
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17 pages, 2432 KiB  
Article
Fertilization Effects of Solid Digestate Treatments on Earthworm Community Parameters and Selected Soil Attributes
by Anna Mazur-Pączka, Kevin R. Butt, Marcin Jaromin, Edmund Hajduk, Mariola Garczyńska, Joanna Kostecka and Grzegorz Pączka
Agriculture 2025, 15(14), 1511; https://doi.org/10.3390/agriculture15141511 - 13 Jul 2025
Viewed by 824
Abstract
An increasing number of soils, including those in EU countries, are affected by organic matter deficiency and the deterioration of nutrients, and using mineral fertilizers is often associated with negative environmental impacts. One of the basic recommendations for sustainable agriculture is to increase [...] Read more.
An increasing number of soils, including those in EU countries, are affected by organic matter deficiency and the deterioration of nutrients, and using mineral fertilizers is often associated with negative environmental impacts. One of the basic recommendations for sustainable agriculture is to increase the proportion of organic fertilizers in crop production and preserve soil biodiversity. An increasingly common organic fertilizer is biogas plant digestate, the physical and chemical properties of which depend primarily on the waste material used in biogas production. However, the fertilizer value of this additive and its effects on the soil environment, including beneficial organisms, remain insufficiently studied. Soil macrofauna, particularly earthworms, play a crucial role in soil ecosystems, because they significantly impact the presence of plant nutrients, actively participate in forming soil structures, and strongly influence organic matter dynamics. The present study was undertaken to determine the effects of fertilizing a silt loam soil with the solid fraction of digestate in monoculture crop production on earthworm community characteristics and the resulting changes in selected soil physicochemical properties. The research was conducted at a single site, so the original soil characteristics across the experimental plots were identical. Plots were treated annually (for 3 years; 2021–2023) with different levels of digestate: DG100 (100% of the recommended rate; 30 t ha−1), DG75 (75% of the recommended rate; 22.5 t ha−1), DG50 (15 t ha−1), DG25 (7.5 t ha−1), and CL (a control plot without fertilizer). An electrical method was used to extract earthworms. Those found at the study site belonged to seven species representing three ecological groups: Dendrodrilus rubidus (Sav.), Lumbricus rubellus (Hoff.), and Dendrobaena octaedra (Sav.) (epigeics); Aporrectodea caliginosa (Sav.), Aporrectodea rosea (Sav.), and Octolasion lacteum (Örley) (endogeics); and Lumbricus terrestris (L.) (anecics). Significant differences in the abundance and biomass of earthworms were found between the higher level treatments (DG100, DG75, and DG50), and the lowest level of fertilization and the control plot (DG25 and CL). The DG25 and CL plots showed an average of 24.7% lower earthworm abundance and 22.8% lower biomass than the other plots. There were no significant differences in the earthworm metrics between the plots within each of the two groups (DG100, DG75, and DG50; and DG25 and CL). The most significant influence on the average abundance and average biomass of Lumbricidae was probably exerted by soil moisture and the annual dosage of digestate. A significant increase in the abundance and biomass of Lumbricidae was shown at plots DG100, DG75, and DG50 in the three successive years of the experiment. The different fertilizer treatments were found to have different effects on selected soil parameters. No significant differences were found among the values of the analyzed soil traits within each plot in the successive years of the study. Full article
(This article belongs to the Section Agricultural Soils)
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27 pages, 1957 KiB  
Article
Vegetable Productivity, Soil Physicochemical and Biochemical Properties, and Microbiome in Response to Organic Substitution in an Intensive Greenhouse Production System
by Xing Liu, Haohui Xu, Yanan Cheng, Ying Zhang, Yonggang Li, Fei Wang, Changwei Shen and Bihua Chen
Agriculture 2025, 15(14), 1493; https://doi.org/10.3390/agriculture15141493 - 11 Jul 2025
Viewed by 289
Abstract
Partial substitution of mineral N fertilizer with manure (organic substitution) is considered as an effective way to reduce N input in intensive agroecosystems. Here, based on a 3-year field experiment, we assessed the influence of different organic substitution ratios (15%, 30%, 45%, and [...] Read more.
Partial substitution of mineral N fertilizer with manure (organic substitution) is considered as an effective way to reduce N input in intensive agroecosystems. Here, based on a 3-year field experiment, we assessed the influence of different organic substitution ratios (15%, 30%, 45%, and 60%, composted chicken manure applied) on vegetable productivity and soil physicochemical and biochemical properties as well as microbiome (metagenomic sequencing) in an intensive greenhouse production system (cucumber-tomato rotation). Organic substitution ratio in 30% got a balance between stable vegetable productivity and maximum N reduction. However, higher substitution ratios decreased annual vegetable yield by 23.29–32.81%. Organic substitution (15–45%) improved soil fertility (12.18–19.94% increase in soil total organic carbon content) and such improvement was not obtained by higher substitution ratio. Soil mean enzyme activity was stable to organic substitution despite the activities of some selected enzymes changed (catalase, urease, sucrase, and alkaline phosphatase). Organic substitution changed the species and functional structures rather than diversity of soil microbiome, and enriched the genes related to soil denitrification (including nirK, nirS, and nosZ). Besides, the 30% of organic substitution obviously enhanced soil microbial network complexity and this enhancement was mainly associated with altered soil pH. At the level tested herein, organic substitution ratio in 30% was suitable for greenhouse vegetable production locally. Long-term influence of different organic substitution ratios on vegetable productivity and soil properties in intensive greenhouse system needs to be monitored. Full article
(This article belongs to the Section Agricultural Systems and Management)
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18 pages, 1291 KiB  
Article
Effect of Calcium Addition on Extracellular Enzymes and Soil Organic Carbon in Maize Rhizosphere Soils
by Zhaoquan He, Xue Shang and Xiaoze Jin
Agronomy 2025, 15(7), 1680; https://doi.org/10.3390/agronomy15071680 - 11 Jul 2025
Viewed by 360
Abstract
This study examined the regulatory mechanism of calcium (Ca) amendment on the dynamics of soil organic carbon (SOC) fractions and extracellular enzyme activities, elucidating the role of Ca in soil carbon cycling processes. A field experiment with maize was conducted, comparing treatments of [...] Read more.
This study examined the regulatory mechanism of calcium (Ca) amendment on the dynamics of soil organic carbon (SOC) fractions and extracellular enzyme activities, elucidating the role of Ca in soil carbon cycling processes. A field experiment with maize was conducted, comparing treatments of low calcium (T1), high calcium (T2), and a calcium-free control (CK). Measurements included inter-root SOC fractions—soluble organic carbon (DOC), microbial biomass carbon (MBC), and readily oxidizable organic carbon (ROC)—and the activities of the following extracellular enzymes: β-xylanase, β-glucosidase (β-glu), phenol oxidase (Phox), peroxidase (Pero), phosphatase (Phos), acetylaminoglucosidase (NAG), and urease. The main findings indicated the following: (1) Calcium addition significantly increased SOC content (115.04% and 99.22% higher in T1 and T2, respectively, than CK during the entire reproductive period) and enhanced microbial activity (elevated DOC and MBC). However, SOC decreased by 8.44% (T1) and 16.38% (T2) relative to CK in the late reproductive stage (irrigation–ripening), potentially reflecting microbial utilization (supported by the inverse correlation between SOC and MBC/DOC), and maize carbon reallocation during grain filling. (2) Calcium activated β-glu, Phox, Phos, NAG, and urease (p < 0.05), with pronounced increases in Phox (241.13 IU·L−1) and Phos (1126.65 U·L−1), indicating enhanced organic matter mineralization and phosphorus availability. (3) Calcium-driven MBC and ROC accumulation was associated with the positive regulation of Phox (path coefficient > 0.8) and the negative regulation of Phos. SOC was co-regulated by β-glu and Phos (R2 = 0.753). (4) Calcium dynamically optimized the short-term carbon distribution through enzyme activity while promoting long-term sequestration. Our study provides new evidence supporting multi-pathway interactions through which calcium mediates enzyme networks to influence the soil carbon cycle. The findings provide a theoretical foundation for calcium fertilizer management and soil carbon sequestration strategies in agriculture, advancing academic and practical goals for sustainable development and carbon neutrality. Full article
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