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Search Results (491)

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20 pages, 2027 KiB  
Article
Metal-Ion-Free Preparation of κ-Carrageenan/Cellulose Hydrogel Beads Using an Ionic Liquid Mixture for Effective Cationic Dye Removal
by Dojin Kim, Dong Han Kim, Jeong Eun Cha, Saerom Park and Sang Hyun Lee
Gels 2025, 11(8), 596; https://doi.org/10.3390/gels11080596 - 1 Aug 2025
Viewed by 133
Abstract
A metal-ion-free method was developed to prepare κ-carrageenan/cellulose hydrogel beads for efficient cationic dye removal. The beads were fabricated using a mixture of 1-ethyl-3-methylimidazolium acetate and N,N-dimethylformamide as the solvent system, followed by aqueous ethanol-induced phase separation. This process eliminated the need for [...] Read more.
A metal-ion-free method was developed to prepare κ-carrageenan/cellulose hydrogel beads for efficient cationic dye removal. The beads were fabricated using a mixture of 1-ethyl-3-methylimidazolium acetate and N,N-dimethylformamide as the solvent system, followed by aqueous ethanol-induced phase separation. This process eliminated the need for metal-ion crosslinkers, which typically neutralize anionic sulfate groups in κ-carrageenan, thereby preserving a high density of accessible binding sites. The resulting beads formed robust interpenetrating polymer networks. The initial swelling ratio reached up to 28.3 g/g, and even after drying, the adsorption capacity remained over 50% of the original. The maximum adsorption capacity for crystal violet was 241 mg/g, increasing proportionally with κ-carrageenan content due to the higher surface concentration of anionic sulfate groups. Kinetic and isotherm analyses revealed pseudo-second-order and Langmuir-type monolayer adsorption, respectively, while thermodynamic parameters indicated that the process was spontaneous and exothermic. The beads retained structural integrity and adsorption performance across pH 3–9 and maintained over 90% of their capacity after five reuse cycles. These findings demonstrate that κ-carrageenan/cellulose hydrogel beads prepared via a metal-ion-free strategy offer a sustainable and effective platform for cationic dye removal from wastewater, with potential for heavy metal ion adsorption. Full article
(This article belongs to the Special Issue Physical and Mechanical Properties of Polymer Gels (3rd Edition))
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10 pages, 1555 KiB  
Article
Lithium-Decorated C26 Fullerene in DFT Investigation: Tuning Electronic Structures for Enhanced Hydrogen Storage
by Jiangang Yu, Lili Liu, Quansheng Li, Zhidong Xu, Yujia Shi and Cheng Lei
Molecules 2025, 30(15), 3223; https://doi.org/10.3390/molecules30153223 - 31 Jul 2025
Viewed by 212
Abstract
Hydrogen energy holds immense potential to address the global energy crisis and environmental challenges. However, its large-scale application is severely hindered by the lack of efficient hydrogen storage materials. This study systematically investigates the H2 adsorption properties of intrinsic C26 fullerene [...] Read more.
Hydrogen energy holds immense potential to address the global energy crisis and environmental challenges. However, its large-scale application is severely hindered by the lack of efficient hydrogen storage materials. This study systematically investigates the H2 adsorption properties of intrinsic C26 fullerene and Li-decorated C26 fullerene using density functional theory (DFT) calculations. The results reveal that Li atoms preferentially bind to the H5-5 site of C26, driven by significant electron transfer (0.90 |e|) from Li to C26. This electron redistribution modulates the electronic structure of C26, as evidenced by projected density of states (PDOS) analysis, where the p orbitals of C atoms near the Fermi level undergo hybridization with Li orbitals, enhancing the electrostatic environment for H2 adsorption. For Li-decorated C26, the average adsorption energy and consecutive adsorption energy decrease as more H2 molecules are adsorbed, indicating a gradual weakening of adsorption strength and signifying a saturation limit of three H2 molecules. Charge density difference and PDOS analyses further demonstrate that H2 adsorption induces synergistic electron transfer from both Li (0.89 |e| loss) and H2 (0.01 |e| loss) to C26 (0.90 |e| gain), with orbital hybridization between H s orbitals, C p orbitals, and Li orbitals stabilizing the adsorbed system. This study aimed to provide a comprehensive understanding of the microscopic mechanism underlying Li-enhanced H2 adsorption on C26 fullerene and offer insights into the rational design of metal-decorated fullerene-based systems for efficient hydrogen storage. Full article
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19 pages, 7965 KiB  
Article
The Influence of Light Rare-Earth Substitution on Electronic and Magnetic Properties of CoFe2O4 Nanoparticles
by Rareș Bortnic, Adam Szatmari, Tiberiu Dragoiu, Radu George Hategan, Roman Atanasov, Lucian Barbu-Tudoran, Coriolan Tiusan, Raluca Lucacel-Ciceo, Roxana Dudric and Romulus Tetean
Nanomaterials 2025, 15(15), 1152; https://doi.org/10.3390/nano15151152 - 25 Jul 2025
Viewed by 309
Abstract
Co0.95R0.05Fe2O4 nanoparticles with R = La, Pr, Nd, Sm, and Eu were synthesized via an environmentally friendly sol–gel method. The prepared samples were studied using X-ray diffraction measurements (XRD), transmission electron microscopy (TEM), X-ray photoelectron microscopy [...] Read more.
Co0.95R0.05Fe2O4 nanoparticles with R = La, Pr, Nd, Sm, and Eu were synthesized via an environmentally friendly sol–gel method. The prepared samples were studied using X-ray diffraction measurements (XRD), transmission electron microscopy (TEM), X-ray photoelectron microscopy (XPS), and magnetic measurements. All compounds were found to be single phases adopting a cubic Fd-3m structure. EDS analysis confirmed the presence of Co, Fe, R, and oxygen in all cases. The XPS measurements reveal that the Co 2p core-level spectra are characteristic for Co3+ ions, as indicated by the 2p3/2 and 2p1/2 binding energies and spin–orbit splitting values. The analysis of the Fe 2p core-level spectra reveals the presence of both Fe3+ and Fe2+ ions in the investigated samples. The doped samples exhibit lower saturation magnetizations than the pristine sample. Very good agreement with the saturation magnetization values was obtained if we assumed that the light rare-earth ions occupy octahedral sites and their magnetic moments align parallel to those of the 3d transition metal ions. The ZFC-FC curves indicate that some nanoparticles remain superparamagnetic, while others exhibit ferrimagnetic ordering at room temperature, suggesting the presence of interparticle interactions. The Mr/Ms ratio at room temperature reflects the dominance of magnetostatic interactions. Full article
(This article belongs to the Section Nanophotonics Materials and Devices)
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19 pages, 3112 KiB  
Article
Durable Superhydrophobic Composite Coating Based on Hydrangea-like SiO2 Nanoparticles with Excellent Performance in Anticorrosion, Drag Reduction, and Antifouling
by Yuhao Xue, Yamei Zhao, Xiaoqi Gu, Mengdan Huo, Kunde Yang, Mingyu Liu, Sixian Fan and Maoyong Zhi
Materials 2025, 18(15), 3443; https://doi.org/10.3390/ma18153443 - 23 Jul 2025
Viewed by 273
Abstract
Superhydrophobic coatings possess distinct wettability characteristics and hold significant potential in metal corrosion protection and underwater drag reduction. However, their practical application is often hindered by poor durability arising from the fragility of their micro/nanostructured surface roughness. In this study, a durable superhydrophobic [...] Read more.
Superhydrophobic coatings possess distinct wettability characteristics and hold significant potential in metal corrosion protection and underwater drag reduction. However, their practical application is often hindered by poor durability arising from the fragility of their micro/nanostructured surface roughness. In this study, a durable superhydrophobic coating featuring a hierarchical, hydrangea-like micro/nanostructure was successfully fabricated on an aluminum alloy substrate via a simple one-step cold-spraying technique. The coating consisted of hydrangea-shaped SiO2 nanoparticles modified with 1H,1H,2H,2H-perfluorodecyltrimethoxysilane (PFDT) to produce multiscale roughness, while epoxy resin (EP) served as the binding matrix to enhance mechanical integrity. The hydrangea-like SiO2 nanostructures were characterized by solid cores and wrinkled, petal-like outgrowths. This unique morphology not only increased the surface roughness but also provided more active sites for air entrapment, thereby enhancing the coating’s overall performance. The h-SiO2@PFDT-EP composite coating exhibited excellent superhydrophobicity, with a WCA of 170.1° ± 0.8° and a SA of 2.7° ± 0.5°. Durability was evaluated through sandpaper abrasion, tape peeling, acid and alkali immersion, artificial weathering, and salt spray tests. The results demonstrated that the coating retained stable superhydrophobic performance under various environmental stresses. Compared with bare 6061 aluminum and EP coatings, its corrosion current density was reduced by four and three orders of magnitude, respectively. Furthermore, the coating achieved a maximum drag-reduction rate of 31.01% within a velocity range of 1.31–7.86 m/s. The coating also displayed excellent self-cleaning properties. Owing to its outstanding durability, corrosion resistance, and drag-reducing capability, this one-step fabricated superhydrophobic coating showed great promise for applications in marine engineering and defense. Full article
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11 pages, 1987 KiB  
Article
Dirhodium Tetraacetate Binding to Lysozyme at Body Temperature
by Gabriella Tito, Giarita Ferraro and Antonello Merlino
Int. J. Mol. Sci. 2025, 26(14), 6582; https://doi.org/10.3390/ijms26146582 - 9 Jul 2025
Viewed by 182
Abstract
Paddlewheel dirhodium complexes are cytotoxic compounds that are also used as catalysts and in the formation of Rh-based artificial metalloenzymes. Low-temperature structures of adducts formed by the model protein hen egg white lysozyme (HEWL) with dirhodium tetraacetate ([Rh2(μ-O2CCH3 [...] Read more.
Paddlewheel dirhodium complexes are cytotoxic compounds that are also used as catalysts and in the formation of Rh-based artificial metalloenzymes. Low-temperature structures of adducts formed by the model protein hen egg white lysozyme (HEWL) with dirhodium tetraacetate ([Rh2(μ-O2CCH3)4]) when crystals of the protein were treated with the metal compound at 20 °C demonstrated that [Rh2(μ-O2CCH3)4] in part breaks down upon reaction with HEWL; dimeric Rh-Rh units bind the side chains of Asp18 and the C-terminal carboxylate, and monometallic fragments coordinate the side chains of Arg14 and His15 in 20% ethylene glycol, 0.100 M sodium acetate at pH 4.5 and 0.600 M sodium nitrate, while dimeric Rh-Rh units bind the side chains of Asn93 and Lys96, the C-terminal carboxylate and Asp101, with monometallic fragments that bind the side chains of Lys33 and His15 in 0.010 M HEPES pH 7.5 and 2.00 M sodium formate. To verify whether the binding of this metallodrug to proteins also occurs at body temperature, crystals of HEWL were grown in 0.010 M HEPES pH 7.5 and 2.00 M sodium formate at 37 °C and soaked with [Rh2(μ-O2CCH3)4] at the same temperature. X-ray diffraction data collected on these crystals at 37 °C demonstrate that [Rh2(μ-O2CCH3)4] reacts with proteins at body temperature. The structures of the Rh/HEWL adduct formed at 20 °C (obtained from data collected at 100 K) and at 37 °C under the same experimental conditions are very similar, with metal binding sites that are conserved. However, metal-containing fragment occupancy is higher in the structure obtained at 37 °C, suggesting a role of temperature in defining the protein metalation process. Full article
(This article belongs to the Special Issue Peptide and Protein Metalation)
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21 pages, 2191 KiB  
Review
Heavy Metal Ion Detection Based on Lateral Flow Assay Technology: Principles and Applications
by Xiaobo Xie, Xinyue Hu, Xin Cao, Qianhui Zhou, Wei Yang, Ranran Yu, Shuaiqi Liu, Huili Hu, Ji Qi and Zhiyang Zhang
Biosensors 2025, 15(7), 438; https://doi.org/10.3390/bios15070438 - 7 Jul 2025
Viewed by 589
Abstract
Heavy metal ions pose a significant threat to the environment and human health due to their high toxicity and bioaccumulation. Traditional instrumentations, although sensitive, are often complex, costly, and unsuitable for on-site rapid detection of heavy metal ions. Lateral flow assay technology has [...] Read more.
Heavy metal ions pose a significant threat to the environment and human health due to their high toxicity and bioaccumulation. Traditional instrumentations, although sensitive, are often complex, costly, and unsuitable for on-site rapid detection of heavy metal ions. Lateral flow assay technology has emerged as a research hotspot due to its rapid, simple, and cost-effective advantages. This review summarizes the applications of lateral flow assay technology based on nucleic acid molecules and antigen–antibody interactions in heavy metal ion detection, focusing on recognition mechanisms such as DNA probes, nucleic acid enzymes, aptamers, and antigen–antibody binding, as well as signal amplification strategies on lateral flow testing strips. By incorporating these advanced technologies, the sensitivity and specificity of lateral flow assays have been significantly improved, enabling highly sensitive detection of various heavy metal ions, including Hg2+, Cd2+, Pb2+, and Cr3+. In the future, the development of lateral flow assay technology for detection of heavy metal ions will focus on multiplex detection, optimization of signal amplification strategies, integration with portable devices, and standardization and commercialization. With continuous technological advancements, lateral flow assay technology will play an increasingly important role in environmental monitoring, food safety, and public health. Full article
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17 pages, 2818 KiB  
Review
Metabolic Responses, Uptake, and Export of Copper in Cyanobacteria
by Jean Coutinho Oder, Thamires Emidio Sateles, Laila Barros de Souza, Adriano Nunes-Nesi, Wagner L. Araújo and Luna Alvarenga-Lucius
Biology 2025, 14(7), 798; https://doi.org/10.3390/biology14070798 - 1 Jul 2025
Viewed by 455
Abstract
Copper (Cu) is an essential micronutrient for cyanobacteria, where it functions as a cofactor in key proteins involved in photosynthesis and antioxidant defense. However, at elevated concentrations, Cu becomes toxic, exhibiting algicidal effects by disrupting metal homeostasis and competing for metal-binding sites on [...] Read more.
Copper (Cu) is an essential micronutrient for cyanobacteria, where it functions as a cofactor in key proteins involved in photosynthesis and antioxidant defense. However, at elevated concentrations, Cu becomes toxic, exhibiting algicidal effects by disrupting metal homeostasis and competing for metal-binding sites on critical cellular proteins. Due to the considerable morphological and physiological diversity within the phylum Cyanobacteria, the thresholds for Cu deficiency or toxicity vary considerably among strains. Maintaining Cu homeostasis in cyanobacterial cells is a complex process involving multiple layers of regulation. It begins at the extracellular polysaccharide layer, involves specialized membrane-bound proteins (in the outer, plasma, and thylakoid membranes), and results in transcriptional regulation in response to intracellular Cu status. This review summarizes the current understanding of Cu uptake and efflux pathways in cyanobacteria and explores how these mechanisms contribute to maintaining cellular Cu balance. The knowledge gained may contribute to the application of cyanobacteria in bioremediation strategies and/or the targeted use of Cu in the control of harmful cyanobacterial blooms. Full article
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21 pages, 4431 KiB  
Article
Enhancing the K-Poisoning Resistance of Heteropoly Acid-Modified Ce/AC Catalyst for Low-Temperature NH3-SCR
by Tongyue Zhou, Tianlong Xiong, Mengyang Fan, Qiao Chen, Yongchun Deng and Jianjun Li
Processes 2025, 13(7), 2069; https://doi.org/10.3390/pr13072069 - 30 Jun 2025
Viewed by 302
Abstract
The combustion of biomass fuels releases alkali metals, which induce severe catalyst deactivation due to alkali metal (K) poisoning in low-temperature ammonia selective catalytic reduction (NH3-SCR) systems. To address this issue, this study developed a series of heteropoly acid (HPA)-modified Ce/AC [...] Read more.
The combustion of biomass fuels releases alkali metals, which induce severe catalyst deactivation due to alkali metal (K) poisoning in low-temperature ammonia selective catalytic reduction (NH3-SCR) systems. To address this issue, this study developed a series of heteropoly acid (HPA)-modified Ce/AC catalysts prepared via incipient wetness impregnation. The low-temperature NH3-SCR performance (80–200 °C) of these catalysts was systematically evaluated, with particular emphasis on their denitrification activity and K-poisoning resistance. The silicotungstic-acid (TSiA)-modified Ce/Ac (TSiA-Ce/AC) catalyst showed an improvement (>20%) in NO conversion activity under the K poisoning condition. The superior K-poisoning resistance of the TSiA-Ce/AC catalyst was attributed to the high density of Brønsted acidic sites and the strong K binding affinity of TSiA, which together protected active sites and preserved the standard SCR reaction pathway under K contaminations. This study proposes a novel strategy for enhancing catalyst K resistance in low-temperature NH3-SCR systems. Full article
(This article belongs to the Special Issue Advances in Metal Catalyst: Synthesis and Application)
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18 pages, 7501 KiB  
Article
Probing the Active Site of Class 3 L-Asparaginase by Mutagenesis: Mutations of the Ser-Lys Tandems of ReAV
by Kinga Pokrywka, Marta Grzechowiak, Joanna Sliwiak, Paulina Worsztynowicz, Joanna I. Loch, Milosz Ruszkowski, Miroslaw Gilski and Mariusz Jaskolski
Biomolecules 2025, 15(7), 944; https://doi.org/10.3390/biom15070944 - 29 Jun 2025
Viewed by 349
Abstract
The ReAV enzyme from Rhizobium etli, a representative of Class 3 L-asparaginases, is sequentially and structurally different from other known L-asparaginases. This distinctiveness makes ReAV a candidate for novel antileukemic therapies. ReAV is a homodimeric protein, with each subunit containing a highly [...] Read more.
The ReAV enzyme from Rhizobium etli, a representative of Class 3 L-asparaginases, is sequentially and structurally different from other known L-asparaginases. This distinctiveness makes ReAV a candidate for novel antileukemic therapies. ReAV is a homodimeric protein, with each subunit containing a highly specific zinc-binding site created by two cysteines, a lysine, and a water molecule. Two Ser-Lys tandems (Ser48-Lys51, Ser80-Lys263) are located in the close proximity of the metal binding site, with Ser48 hypothesized to be the catalytic nucleophile. To further investigate the catalytic process of ReAV, site-directed mutagenesis was employed to introduce alanine substitutions at residues from the Ser-Lys tandems and at Arg47, located near the Ser48-Lys51 tandem. These mutational studies, along with enzymatic assays and X-ray structure determinations, demonstrated that substitution of each of these highly conserved residues abolished the catalytic activity, confirming their essential role in enzyme mechanism. Full article
(This article belongs to the Special Issue State-of-the-Art Protein X-Ray Crystallography)
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19 pages, 2053 KiB  
Article
Multifaceted Pollutant Removal by Salicornia brachiata: A Phytoremediation Approach
by Piyoni Ruwanpathirana, Imalshi Gunawardana, Hasini Navodya, Ajith C. Herath, Dinum Perera and Manavi S. Ekanayake
Plants 2025, 14(13), 1963; https://doi.org/10.3390/plants14131963 - 26 Jun 2025
Viewed by 346
Abstract
The increasing discharge of nutrient and metal-laden effluents into saline environments demands sustainable remediation strategies. This study evaluated the phytoremediation potential of Salicornia brachiata, a halophytic plant, under hydroponic conditions using varying concentrations of three macronutrients—nitrate (NO3), phosphate (PO [...] Read more.
The increasing discharge of nutrient and metal-laden effluents into saline environments demands sustainable remediation strategies. This study evaluated the phytoremediation potential of Salicornia brachiata, a halophytic plant, under hydroponic conditions using varying concentrations of three macronutrients—nitrate (NO3), phosphate (PO43−), and calcium (Ca2+)—and three heavy metals—lead (Pb2+), chromium (Cr6+), and copper (Cu2+). The plant exhibited high removal efficiencies across all treatments, with Pb2+ and Cr6+ reaching nearly 99% removal within two days, while macronutrient removal showed a steady, time-dependent increase over the 14-day period. Several biochemical parameters, including proline content and antioxidant enzyme activities (catalase, superoxide dismutase, peroxidase, polyphenol oxidase), were significantly affected by treatments, with most showing dose-dependent responses to heavy metal exposure, indicating strong biochemical resilience. Fourier transform infrared spectroscopy revealed pollutant-specific structural shifts and identified –OH, –NH, and –COO groups as key binding sites. The study quantifies the removal efficiency of S. brachiata for both nutrients and metals and provides mechanistic insight into its ionic stress response and binding pathways. These findings establish S. brachiata as a viable candidate for integrated phytoremediation in saline, contaminated water systems. Full article
(This article belongs to the Section Plant Response to Abiotic Stress and Climate Change)
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16 pages, 4935 KiB  
Article
Interlayer-Spacing-Modification of MoS2 via Inserted PANI with Fast Kinetics for Highly Reversible Aqueous Zinc-Ion Batteries
by Shuang Fan, Yangyang Gong, Suliang Chen and Yingmeng Zhang
Micromachines 2025, 16(7), 754; https://doi.org/10.3390/mi16070754 - 26 Jun 2025
Viewed by 449
Abstract
Layered transition metal dichalcogenides (TMDs) have gained considerable attention as promising cathodes for aqueous zinc-ion batteries (AZIBs) because of their tunable interlayer architecture and rich active sites for Zn2+ storage. However, unmodified TMDs face significant challenges, including limited redox activity, sluggish kinetics, [...] Read more.
Layered transition metal dichalcogenides (TMDs) have gained considerable attention as promising cathodes for aqueous zinc-ion batteries (AZIBs) because of their tunable interlayer architecture and rich active sites for Zn2+ storage. However, unmodified TMDs face significant challenges, including limited redox activity, sluggish kinetics, and insufficient structural stability during cycling. These limitations are primarily attributed to their narrow interlayer spacing, strong electrostatic interactions, the large ionic hydration radius, and their high binding energy of Zn2+ ions. To address these restrictions, an in situ organic polyaniline (PANI) intercalation strategy is proposed to construct molybdenum disulfide (MoS2)-based cathodes with extended layer spacing, thereby improving the zinc storage capabilities. The intercalation of PANI effectively enhances interplanar spacing of MoS2 from 0.63 nm to 0.98 nm, significantly facilitating rapid Zn2+ diffusion. Additionally, the π-conjugated electron structure introduced by PANI effectively shields the electrostatic interaction between Zn2+ ions and the MoS2 host, thereby promoting Zn2+ diffusion kinetics. Furthermore, PANI also serves as a structural stabilizer, maintaining the integrity of the MoS2 layers during Zn-ion insertion/extraction processes. Furthermore, the conductive conjugated PANI boosts the ionic and electronic conductivity of the electrodes. As expected, the PANI–MoS2 electrodes exhibit exceptional electrochemical performance, delivering a high specific capacity of 150.1 mA h g−1 at 0.1 A g−1 and retaining 113.3 mA h g−1 at 1 A g−1, with high capacity retention of 81.2% after 500 cycles. Ex situ characterization techniques confirm the efficient and reversible intercalation/deintercalation of Zn2+ ions within the PANI–MoS2 layers. This work supplies a rational interlayer engineering strategy to optimize the electrochemical performance of MoS2-based electrodes. By addressing the structural and kinetic limitations of TMDs, this approach offers new insights into the development of high-performance AZIBs for energy storage applications. Full article
(This article belongs to the Special Issue Advancing Energy Storage Techniques: Chemistry, Materials and Devices)
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15 pages, 1765 KiB  
Article
Proton and Metal Dication Affinities of Tetracyclic Imidazo[4,5-b]Pyridine-Based Molecules: Insights from Mass Spectrometry and DFT Analysis
by Lucija Vrban, Ingrid Ana Martinac, Marijana Hranjec, Marijana Pocrnić, Nives Galić, Renata Kobetić and Robert Vianello
Molecules 2025, 30(13), 2684; https://doi.org/10.3390/molecules30132684 - 21 Jun 2025
Viewed by 1030
Abstract
The imidazo[4,5-b]pyridine scaffold, a versatile heterocyclic system, is renowned for its biological and chemical significance, yet its coordination chemistry with biologically relevant metal dications remains underexplored. This study investigates the proton and metal dication affinities of twelve tetracyclic organic molecules based [...] Read more.
The imidazo[4,5-b]pyridine scaffold, a versatile heterocyclic system, is renowned for its biological and chemical significance, yet its coordination chemistry with biologically relevant metal dications remains underexplored. This study investigates the proton and metal dication affinities of twelve tetracyclic organic molecules based on the imidazo[4,5-b]pyridine core, focusing on their interactions with Ca(II), Mg(II), Zn(II), and Cu(II). Employing a dual approach of electrospray ionization mass spectrometry (ESI-MS) and density functional theory (DFT) calculations, we characterized the formation, stability, and structural features of metal–ligand complexes. ESI-MS revealed distinct binding behaviors, with Cu(II) and Zn(II) forming stable mono- and dinuclear complexes, often accompanied by reduction processes (e.g., Cu(II) to Cu(I)), while Ca(II) and Mg(II) exhibited lower affinities. DFT analysis elucidated the electronic structures and thermodynamic stabilities, highlighting the imidazole nitrogen as the primary binding site and the influence of regioisomeric variations on affinity. Substituent effects were found to modulate binding strength, with electron-donating groups enhancing basicity and metal coordination. These findings provide a comprehensive understanding of the coordination chemistry of imidazo[4,5-b]pyridine derivatives, offering insights into their potential applications in metalloenzyme modulation, metal-ion sensing, and therapeutic chelation. Full article
(This article belongs to the Section Organic Chemistry)
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15 pages, 6317 KiB  
Article
Long-Range Allosteric Communication Modulated by Active Site Mn(II) Coordination Drives Catalysis in Xanthobacter autotrophicus Acetone Carboxylase
by Jenna R. Mattice, Krista A. Shisler, Jadyn R. Malone, Nic A. Murray, Monika Tokmina-Lukaszewska, Arnab K. Nath, Tamara Flusche, Florence Mus, Jennifer L. DuBois, John W. Peters and Brian Bothner
Int. J. Mol. Sci. 2025, 26(13), 5945; https://doi.org/10.3390/ijms26135945 - 20 Jun 2025
Viewed by 343
Abstract
Acetone carboxylase (AC) from Xanthobacter autotrophicus is a 360 KDa α2β2γ2 heterohexamer that catalyzes the ATP-dependent formation of phosphorylated acetone and bicarbonate intermediates that react at Mn(II) metal active sites to form acetoacetate. Structural models of X. autotrophicus [...] Read more.
Acetone carboxylase (AC) from Xanthobacter autotrophicus is a 360 KDa α2β2γ2 heterohexamer that catalyzes the ATP-dependent formation of phosphorylated acetone and bicarbonate intermediates that react at Mn(II) metal active sites to form acetoacetate. Structural models of X. autotrophicus AC (XaAC) with and without nucleotides reveal that the binding and phosphorylation of the two substrates occurs ~40 Å from the Mn(II) active sites where acetoacetate is formed. Based on the crystal structures, a significant conformational change was proposed to open and close a tunnel that facilitates the passage of reaction intermediates between the sites for nucleotide binding and phosphorylation of substrates and Mn(II) sites of acetoacetate formation. We have employed electron paramagnetic resonance (EPR), kinetic assays, and hydrogen/deuterium exchange mass spectrometry (HDX-MS) of poised ligand-bound states and site-specific amino acid variants to complete an in-depth analysis of Mn(II) coordination and allosteric communication throughout the catalytic cycle. In contrast with the established paradigms for carboxylation, our analyses of XaAC suggested a carboxylate shift that couples both local and long-range structural transitions. Shifts in the coordination mode of a single carboxylic acid residue (αE89) mediate both catalysis proximal to a Mn(II) center and communication with an ATP active site in a separate subunit of a 180 kDa α2β2γ2 complex at a distance of 40 Å. This work demonstrates the power of combining structural models from X-ray crystallography with solution-phase spectroscopy and biophysical techniques to elucidate functional aspects of a multi-subunit enzyme. Full article
(This article belongs to the Special Issue Emerging Topics in Macromolecular Crystallography)
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18 pages, 14135 KiB  
Article
Investigation of the Properties of Low Water-to-Solid Ratio Vibro-Press-Formed Alkali-Activated Municipal Solid Waste Incineration Bottom-Ash Concrete
by Gintautas Tamošaitis, Danutė Vaičiukynienė and Diana Bajare
Materials 2025, 18(13), 2926; https://doi.org/10.3390/ma18132926 - 20 Jun 2025
Viewed by 266
Abstract
This work focuses on the use of municipal waste incineration bottom ash (MSWI) for the development and production of products suitable for use as construction products. The generation of these ashes is increasing every year due to the incineration of municipal waste. There [...] Read more.
This work focuses on the use of municipal waste incineration bottom ash (MSWI) for the development and production of products suitable for use as construction products. The generation of these ashes is increasing every year due to the incineration of municipal waste. There are currently three incineration plants operating in major cities in Lithuania. The non-hazardous bottom ash remaining from the incineration process is stored in dedicated sorting and aging sites until it is used as an inert form of aggregate for the installation of road foundations. However, it has been observed that these ashes have a tendency to bind and cement when exposed to atmospheric precipitation at the storage site. Based on this characteristic, it was decided in this study to use alkaline activation of the ash to accelerate the bonding process and to create a dense, non-porous composite concrete structure. This activation method is known to create another problem during ash bonding, where the presence of metallic aluminum particles in the ash leads to the release of hydrogen gas and makes the structure of the cured samples porous. For the purposes of the study, it was decided to create a completely different mixture structure and not to use additional water in the mixtures tested. A very low water/solids ratio (W/S) of <0.08 was used for the alkaline activation of the mixtures. All the water required for ash activation was obtained from sodium silicate and sodium hydroxide solution. Metakaolin waste (MKW) was used to adjust the SiO2/Na2O/Al2O3 ratio of the mixtures. Vibro-pressing was used to form and increase the density of the samples. And for the formation of the concrete structure, 0/4 fraction sand was used as aggregate. The final alkali-activated sample obtained had properties similar to those of the very widely used vibro-pressed cementitious paving tiles and did not exhibit hydrogen evolution during alkali activation due to the very low W/S ratio. The best results were achieved by samples with a highest compressive strength of 40.0 MPa and a tensile strength of 5.60 MPa, as well as a density of 1950 kg/m3. It is believed that this alkaline activation and vibro-pressing method can expand the use of MSWI ash in the development of building products. Full article
(This article belongs to the Special Issue Low-Carbon Construction and Building Materials)
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14 pages, 3077 KiB  
Article
Structure Prediction of Complexes Controlling Beta- and Gamma-Herpesvirus Late Transcription Using AlphaFold 3
by David H. Price
Viruses 2025, 17(6), 779; https://doi.org/10.3390/v17060779 - 29 May 2025
Viewed by 585
Abstract
All beta- and gamma-herpesviruses utilize a set of six viral proteins to facilitate transcription from specific promoters that become active late in the viral life cycle. These proteins form a complex that interacts with a TA-rich sequence upstream of the late transcription start [...] Read more.
All beta- and gamma-herpesviruses utilize a set of six viral proteins to facilitate transcription from specific promoters that become active late in the viral life cycle. These proteins form a complex that interacts with a TA-rich sequence upstream of the late transcription start sites and recruits RNA polymerase II (Pol II). The structure of any of the late transcription factors (LTFs) alone or in complexes has not been solved by standard means yet, but a fair amount is known about how the proteins interact and where the complex is positioned over the late promoters. Here, AlphaFold3 was used to predict and analyze the LTF complex using proteins from the beta-herpesviruses HCMV, MCMV, HHV6, and HHV7, and from the gamma-herpesviruses EBV and KSHV. The predicted structures had high levels of confidence and were remarkably similar even though there is little sequence conservation in the LTFs across the viruses. The results are consistent with most of the previously determined information concerning the interaction of the factors with each other and with DNA. A conserved threonine phosphorylation in one of the subunits that is critical to the function of the LTFs is predicted to be at the junction of five subunits. AlphaFold 3 predicts seven metal ion binding sites in each of the four beta-herpesviruses and either five or six in the gamma-herpesviruses created by conserved residues in three of the subunits. The structures also provide insights into the function of the subunits and which host general transcription factors (GTFs) may or may not be utilized during initiation. Full article
(This article belongs to the Section General Virology)
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