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Search Results (1,642)

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Keywords = habitat adaption

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17 pages, 6461 KiB  
Article
Southernmost Eurasian Record of Reindeer (Rangifer) in MIS 8 at Galería (Atapuerca, Spain): Evidence of Progressive Southern Expansion of Glacial Fauna Across Climatic Cycles
by Jan van der Made, Ignacio A. Lazagabaster, Paula García-Medrano and Isabel Cáceres
Quaternary 2025, 8(3), 43; https://doi.org/10.3390/quat8030043 (registering DOI) - 1 Aug 2025
Abstract
During the Pleistocene, the successive ice ages prompted the southward expansion of the “Mammoth Steppe” ecosystem, a prevalent habitat that supported species adapted to cold environments such as the mammoth, woolly rhinoceros, and reindeer. Previously, the earliest evidence for such cold-adapted species in [...] Read more.
During the Pleistocene, the successive ice ages prompted the southward expansion of the “Mammoth Steppe” ecosystem, a prevalent habitat that supported species adapted to cold environments such as the mammoth, woolly rhinoceros, and reindeer. Previously, the earliest evidence for such cold-adapted species in the Iberian Peninsula dated back to Marine Isotope Stage 6 (MIS 6, ~191–123 ka). This paper reports the discovery of a reindeer (Rangifer) tooth from Unit GIII of the Galería site at the Atapuerca-Trinchera site complex, dated to MIS 8 (~300–243 ka). This find is significant as it represents not only the oldest evidence of glacial fauna in the Iberian Peninsula but also the southernmost occurrence of reindeer in Europe of this age. The presence of Rangifer at this latitude (42°21′ N) during MIS 8 suggests that the glacial conditions affected the Iberian fauna earlier and with greater intensity than previously understood. Over the subsequent climatic cycles, cold-adapted species spread further south, reaching Madrid (40°20′) during the penultimate glacial period and the province of Granada (37°01′) during the last glacial maximum. The coexistence of human fossils and lithic artefacts within Units GII and GIII at Galería indicates that early humans also inhabited these glacial environments at Atapuerca. This study elaborates on the morphological and archaeological significance of the reindeer fossil, emphasizing its role in understanding the biogeographical patterns of glacial fauna and the adaptability of Middle Pleistocene human populations. Full article
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16 pages, 4272 KiB  
Article
Prediction Analysis of Integrative Quality Zones for Corydalis yanhusuo W. T. Wang Under Climate Change: A Rare Medicinal Plant Endemic to China
by Huiming Wang, Bin Huang, Lei Xu and Ting Chen
Biology 2025, 14(8), 972; https://doi.org/10.3390/biology14080972 (registering DOI) - 1 Aug 2025
Abstract
Corydalis yanhusuo W. T. Wang, commonly known as Yanhusuo, is an important and rare medicinal plant resource in China. Its habitat integrity is facing severe challenges due to climate change and human activities. Establishing an integrative quality zoning system for this species is [...] Read more.
Corydalis yanhusuo W. T. Wang, commonly known as Yanhusuo, is an important and rare medicinal plant resource in China. Its habitat integrity is facing severe challenges due to climate change and human activities. Establishing an integrative quality zoning system for this species is of significant practical importance for resource conservation and adaptive management. This study integrates multiple data sources, including 121 valid distribution points, 37 environmental factors, future climate scenarios (SSP126 and SSP585 pathways for the 2050s and 2090s), and measured content of tetrahydropalmatine (THP) from 22 sampling sites. A predictive framework for habitat suitability and spatial distribution of effective components was constructed using a multi-model coupling approach (MaxEnt, ArcGIS spatial analysis, and co-kriging method). The results indicate that the MaxEnt model exhibits high prediction accuracy (AUC > 0.9), with the dominant environmental factors being the precipitation of the wettest quarter (404.8~654.5 mm) and the annual average temperature (11.8~17.4 °C). Under current climatic conditions, areas of high suitability are concentrated in parts of Central and Eastern China, including the Sichuan Basin, the middle–lower Yangtze plains, and coastal areas of Shandong and Liaoning. In future climate scenarios, the center of suitable areas is predicted to shift northwestward. The content of THP is significantly correlated with the mean diurnal temperature range, temperature seasonality, and the mean temperature of the wettest quarter (p < 0.01). A comprehensive assessment identifies the Yangtze River Delta region, Central China, and parts of the Loess Plateau as the optimal integrative quality zones. This research provides a scientific basis and decision-making support for the sustainable utilization of C. yanhusuo and other rare medicinal plants in China. Full article
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24 pages, 7997 KiB  
Article
Comparative Analysis of Habitat Expansion Mechanisms for Four Invasive Amaranthaceae Plants Under Current and Future Climates Using MaxEnt
by Mao Lin, Xingzhuang Ye, Zixin Zhao, Shipin Chen and Bao Liu
Plants 2025, 14(15), 2363; https://doi.org/10.3390/plants14152363 - 1 Aug 2025
Abstract
As China’s first systematic assessment of high-risk Amaranthaceae invaders, this study addresses a critical knowledge gap identified in the National Invasive Species Inventory, in which four invasive Amaranthaceae species (Dysphania ambrosioides, Celosia argentea, Amaranthus palmeri, and Amaranthus spinosus) [...] Read more.
As China’s first systematic assessment of high-risk Amaranthaceae invaders, this study addresses a critical knowledge gap identified in the National Invasive Species Inventory, in which four invasive Amaranthaceae species (Dysphania ambrosioides, Celosia argentea, Amaranthus palmeri, and Amaranthus spinosus) are prioritized due to CNY 2.6 billion annual ecosystem damages in China. By coupling multi-species comparative analysis with a parameter-optimized Maximum Entropy (MaxEnt) model integrating climate, soil, and topographical variables in China under Shared Socioeconomic Pathways (SSP) 126/245/585 scenarios, we reveal divergent expansion mechanisms (e.g., 247 km faster northward shift in A. palmeri than D. ambrosioides) that redefine invasion corridors in the North China Plain. Under current conditions, the suitable habitats of these species span from 92° E to 129° E and 18° N to 49° N, with high-risk zones concentrated in central and southern China, including the Yunnan–Guizhou–Sichuan region and the North China Plain. Temperature variables (Bio: Bioclimatic Variables; Bio6, Bio11) were the primary contributors based on permutation importance (e.g., Bio11 explained 56.4% for C. argentea), while altitude (e.g., 27.3% for A. palmeri) and UV-B (e.g., 16.2% for A. palmeri) exerted lower influence. Model validation confirmed high accuracy (mean area under the curve (AUC) > 0.86 and true skill statistic (TSS) > 0.6). By the 2090s, all species showed net habitat expansion overall, although D. ambrosioides exhibited net total contractions during mid-century under the SSP126/245 scenarios, C. argentea experienced reduced total suitability during the 2050s–2070s despite high-suitability growth, and A. palmeri and A. spinosus expanded significantly in both total and highly suitable habitat. All species shifted their distribution centroids northward, aligning with warming trends. Overall, these findings highlight the critical role of temperature in driving range dynamics and underscore the need for latitude-specific monitoring strategies to mitigate invasion risks, providing a scientific basis for adaptive management under global climate change. Full article
(This article belongs to the Section Plant Ecology)
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24 pages, 6731 KiB  
Article
Combined Impacts of Acute Heat Stress on the Histology, Antioxidant Activity, Immunity, and Intestinal Microbiota of Wild Female Burbot (Lota Lota) in Winter: New Insights into Heat Sensitivity in Extremely Hardy Fish
by Cunhua Zhai, Yutao Li, Ruoyu Wang, Haoxiang Han, Ying Zhang and Bo Ma
Antioxidants 2025, 14(8), 947; https://doi.org/10.3390/antiox14080947 (registering DOI) - 31 Jul 2025
Abstract
Temperature fluctuations caused by climate change and global warming pose a threat to fish. The burbot (lota lota) population is particularly sensitive to increased water temperature, but the systematic impacts of high-temperature exposure on their liver and intestinal health remain unclear. [...] Read more.
Temperature fluctuations caused by climate change and global warming pose a threat to fish. The burbot (lota lota) population is particularly sensitive to increased water temperature, but the systematic impacts of high-temperature exposure on their liver and intestinal health remain unclear. In January of 2025, we collected wild adult burbot individuals from the Ussuri River (water temperature: about 2 °C), China. The burbot were exposed to 2 °C, 7 °C, 12 °C, 17 °C, and 22 °C environments for 96 h; then, the liver and intestinal contents were subsequently collected for histopathology observation, immunohistochemistry, biochemical index assessment, and transcriptome/16S rDNA sequencing analysis. There was obvious liver damage including hepatocyte necrosis, fat vacuoles, and cellular peripheral nuclei. Superoxide dismutase (SOD), catalase (CAT), and glutathione peroxidase (GSH-Px) activities were elevated and subsequently decreased. Additionally, the malondialdehyde (MDA) level significantly increased with increasing temperature. These results indicate that 7 °C (heat stress temperature), 12 °C (tipping point for normal physiological metabolism status), 17 °C (tipping point for individual deaths), and 22 °C (thermal limit) are critical temperatures in terms of the physiological response of burbot during their breeding period. In the hepatic transcriptome profiling, 6538 differentially expressed genes (DEGs) were identified, while KEGG enrichment analysis showed that high-temperature stress could affect normal liver function by regulating energy metabolism, immune, and apoptosis-related pathways. Microbiomics also revealed that acute heat stress could change the intestinal microbe community structure. Additionally, correlation analysis suggested potential regulatory relationships between intestinal microbe taxa and immune/apoptosis-related DEGs in the liver. This study revealed the potential impact of environmental water temperature changes in cold habitats in winter on the physiological adaptability of burbot during the breeding period and provides new insights for the ecological protection of burbot in the context of global climate change and habitat warming. Full article
(This article belongs to the Special Issue Antioxidant Response in Aquatic Animals)
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12 pages, 1641 KiB  
Article
Intraspecific Variations in Ecomorphological Functional Traits of Montane Stream-Dwelling Frogs Were Driven by Their Microhabitat Conditions
by Xiwen Peng, Da Kang, Guangfeng Chen, Suwen Hu, Zijian Sun and Tian Zhao
Animals 2025, 15(15), 2243; https://doi.org/10.3390/ani15152243 - 30 Jul 2025
Abstract
Understanding how habitat conditions drive morphological adaptations in animals is critical in ecology, yet amphibian studies remain limited. This study investigated intraspecific variation in ecomorphological traits of three montane stream-dwelling frogs (Quasipaa boulengeri, Amolops sinensis, and Odorrana margaratae) across [...] Read more.
Understanding how habitat conditions drive morphological adaptations in animals is critical in ecology, yet amphibian studies remain limited. This study investigated intraspecific variation in ecomorphological traits of three montane stream-dwelling frogs (Quasipaa boulengeri, Amolops sinensis, and Odorrana margaratae) across elevation gradients in Tianping Mountain, China. Using morphological measurements and environmental variables collected from ten transects, we analyzed functional traits related to feeding and locomotion and assessed their associations with microhabitat variables. Significant trait differences between low- and high-elevation groups were detected only in Q. boulengeri, with high-elevation individuals exhibiting greater body mass and shorter hindlimbs. Redundancy analysis demonstrated that microhabitat variables, particularly air humidity, flow rate, and rock coverage, were linked to trait variations. For example, air humidity and flow rate significantly influenced Q. boulengeri’s body and limb proportions, while flow rate affected A. sinensis’s snout and limb morphology. In addition, sex and seasonal effects were also associated with trait variations. These results underscore amphibians’ phenotypic plasticity in response to the environment and highlight the role of microhabitat complexity in shaping traits. By linking habitat heterogeneity to eco-morphology, this study advocates for conservation strategies that preserve varied stream environments to support amphibian resilience amid environmental changes. Full article
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8 pages, 7294 KiB  
Interesting Images
A Rocky Intertidal Desert at the Head of a Large Macrotidal Estuary in Quebec, Canada
by Ricardo A. Scrosati
Diversity 2025, 17(8), 535; https://doi.org/10.3390/d17080535 - 30 Jul 2025
Viewed by 92
Abstract
This article documents the widespread absence of sessile species in bedrock intertidal habitats at the head of the St. Lawrence Estuary, a large macrotidal estuary located in eastern Canada. Extensive observations revealed that no seaweeds or sessile invertebrates occurred anywhere (including cracks and [...] Read more.
This article documents the widespread absence of sessile species in bedrock intertidal habitats at the head of the St. Lawrence Estuary, a large macrotidal estuary located in eastern Canada. Extensive observations revealed that no seaweeds or sessile invertebrates occurred anywhere (including cracks and crevices) on substrate areas that become exposed to the air during low tides. Only one sessile species, a green filamentous alga, was found submerged in tidepools. The lack of truly marine sessile species is likely explained by the very low water salinity of this coast, while the absence of sessile freshwater species on intertidal substrates outside of tidepools likely responds to a combination of oligohaline conditions during high tides and daily exposures to the air during low tides, which freshwater species are typically not adapted to. Influences of winter ice scour and coastal suspended sediments are likely secondary. Experimental research could unravel the interactive effects of these abiotic stressors. Overall, this “intertidal desert” could be a useful model system to further explore the boundaries of life on our planet. Full article
(This article belongs to the Collection Interesting Images from the Sea)
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15 pages, 4340 KiB  
Article
Variations in Fine-Root Traits of Pseudotsuga sinensis Across Different Rocky-Desertification Gradients
by Wangjun Li, Shun Zou, Dongpeng Lv, Bin He and Xiaolong Bai
Diversity 2025, 17(8), 533; https://doi.org/10.3390/d17080533 - 29 Jul 2025
Viewed by 90
Abstract
Plant functional traits serve as vital tools for understanding vegetation adaptation mechanisms in changing environments. As the primary organs for nutrient acquisition from soil, fine roots are highly sensitive to environmental variations. However, current research on fine-root adaptation strategies predominantly focuses on tropical, [...] Read more.
Plant functional traits serve as vital tools for understanding vegetation adaptation mechanisms in changing environments. As the primary organs for nutrient acquisition from soil, fine roots are highly sensitive to environmental variations. However, current research on fine-root adaptation strategies predominantly focuses on tropical, subtropical, and temperate forests, leaving a significant gap in comprehensive knowledge regarding fine-root responses in rocky-desertification habitats. This study investigates the fine roots of Pseudotsuga sinensis across varying degrees of rocky desertification (mild, moderate, severe, and extremely severe). By analyzing fine-root morphological and nutrient traits, we aim to elucidate the trait differences and correlations under different desertification intensities. The results indicate that root dry matter content increases significantly with escalating desertification severity. Fine roots in mild and extremely severe desertification exhibit notably higher root C, K, and Mg concentrations compared to those in moderate and severe desertification, while root Ca concentration shows an inverse trend. Our correlation analyses reveal a highly significant positive relationship between specific root length and specific root area, whereas root dry matter content demonstrates a significant negative correlation with elemental concentrations. The principal component analysis (PCA) further indicates that the trait associations adopted by the forest in mild- and extremely severe-desertification environments are different from those in moderate- and severe-desertification environments. This study did not account for soil nutrient dynamics, microbial diversity, or enzymatic activity—key factors influencing fine-root adaptation. Future research should integrate root traits with soil properties to holistically assess resource strategies in rocky-desertification ecosystems. This study can serve as a theoretical reference for research on root characteristics and adaptation strategies of plants in rocky-desertification habitats. Full article
(This article belongs to the Section Plant Diversity)
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26 pages, 2486 KiB  
Review
Sports in Natural Forests: A Systematic Review of Environmental Impact and Compatibility for Readability
by Iulian Bratu, Lucian Dinca, Ionut Schiteanu, George Mocanu, Gabriel Murariu, Mirela Stanciu and Miglena Zhiyanski
Sports 2025, 13(8), 250; https://doi.org/10.3390/sports13080250 - 29 Jul 2025
Viewed by 299
Abstract
The intersection of sports and natural forests and green spaces represents an emerging interdisciplinary field with implications for public health, environmental science, and sustainable land management and refers to the variety of cultural ecosystem services demanded by people from ecosystems. This manuscript presents [...] Read more.
The intersection of sports and natural forests and green spaces represents an emerging interdisciplinary field with implications for public health, environmental science, and sustainable land management and refers to the variety of cultural ecosystem services demanded by people from ecosystems. This manuscript presents a systematic bibliometric and thematic analysis of 148 publications for the period 1993–2024 identified through Web of Science and Scopus, aiming to evaluate the current state of research on sports activities conducted in natural forest environments. Findings indicated a marked increase in scientific interest of this topic over the past two decades, with key contributions from countries such as England, Germany, China, and the United States. Researchers most frequently examined sports such as hiking, trail running, mountain biking, and orienteering for their capacity to provide physiological and psychological benefits, reduce stress, and enhance mental well-being. The literature analysis highlights ecological concerns, particularly those associated with habitat disturbance, biodiversity loss, and conflicts between recreation and conservation. Six principal research themes were identified: sports in urban forests, sports tourism, hunting and fishing, recreational sports, health benefits, and environmental impacts. Keyword and co-authorship analyses revealed a multidisciplinary knowledge base with evolving thematic focuses. In conclusion, the need for integrated approaches that incorporate ecological impact assessment, stakeholder perspectives, and adaptive forest governance to ensure sustainable recreational use of natural forest ecosystems is underlined. Full article
(This article belongs to the Special Issue Fostering Sport for a Healthy Life)
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24 pages, 3204 KiB  
Article
Host Shaping Associated Microbiota in Hydrothermal Vent Snails from the Indian Ocean Ridge
by Xiang Zeng, Jianwei Chen, Guilin Liu, Yadong Zhou, Liping Wang, Yaolei Zhang, Shanshan Liu and Zongze Shao
Biology 2025, 14(8), 954; https://doi.org/10.3390/biology14080954 - 29 Jul 2025
Viewed by 141
Abstract
Snails at hydrothermal vents rely on symbiotic bacteria for nutrition; however, the specifics of these associations in adapting to such extreme environments remain underexplored. This study investigated the community structure and metabolic potential of bacteria associated with two Indian Ocean vent snails, Chrysomallon [...] Read more.
Snails at hydrothermal vents rely on symbiotic bacteria for nutrition; however, the specifics of these associations in adapting to such extreme environments remain underexplored. This study investigated the community structure and metabolic potential of bacteria associated with two Indian Ocean vent snails, Chrysomallon squamiferum and Gigantopelta aegis. Using microscopic, phylogenetic, and metagenomic analyses, this study examines bacterial communities inhabiting the foot and gland tissues of these snails. G. aegis exhibited exceptionally low bacterial diversity (Shannon index 0.14–0.18), primarily Gammaproteobacteria (99.9%), including chemosynthetic sulfur-oxidizing Chromatiales using Calvin–Benson–Bassham cycle and methane-oxidizing Methylococcales in the glands. C. squamiferum hosted significantly more diverse symbionts (Shannon indices 1.32–4.60). Its black variety scales were dominated by Campylobacterota (67.01–80.98%), such as Sulfurovum, which perform sulfur/hydrogen oxidation via the reductive tricarboxylic acid cycle, with both Campylobacterota and Gammaproteobacteria prevalent in the glands. The white-scaled variety of C. squamiferum had less Campylobacterota but a higher diversity of heterotrophic bacteria, including Delta-/Alpha-Proteobacteria, Bacteroidetes, and Firmicutes (classified as Desulfobacterota, Pseudomomonadota, Bacteroidota, and Bacillota in GTDB taxonomy). In C. squamiferum, Gammaproteobacteria, including Chromatiales, Thiotrichales, and a novel order “Endothiobacterales,” were chemosynthetic, capable of oxidizing sulfur, hydrogen, or iron, and utilizing the Calvin–Benson–Bassham cycle for carbon fixation. Heterotrophic Delta- and Alpha-Proteobacteria, Bacteroidetes, and Firmicutes potentially utilize organic matter from protein, starch, collagen, amino acids, thereby contributing to the holobiont community and host nutrition accessibility. The results indicate that host species and intra-species variation, rather than the immediate habitat, might shape the symbiotic microbial communities, crucial for the snails’ adaptation to vent ecosystems. Full article
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17 pages, 7301 KiB  
Article
Environmental Analysis for the Implementation of Underwater Paths on Sepultura Beach, Southern Brazil: The Case of Palythoa caribaeorum Bleaching Events at the Global Southern Limit of Species Distribution
by Rafael Schroeder, Lucas Gavazzoni, Carlos E. N. de Oliveira, Pedro H. M. L. Marques and Ewerton Wegner
Coasts 2025, 5(3), 26; https://doi.org/10.3390/coasts5030026 - 28 Jul 2025
Viewed by 119
Abstract
Recreational diving depends on healthy marine ecosystems, yet it can harm biodiversity through species displacement and habitat damage. Bombinhas, a biodiverse diving hotspot in southern Brazil, faces growing threats from human activity and climate change. This study assessed the ecological structure of Sepultura [...] Read more.
Recreational diving depends on healthy marine ecosystems, yet it can harm biodiversity through species displacement and habitat damage. Bombinhas, a biodiverse diving hotspot in southern Brazil, faces growing threats from human activity and climate change. This study assessed the ecological structure of Sepultura Beach (2018) for potential diving trails, comparing it with historical data from Porto Belo Island. Using visual censuses, transects, and photo-quadrats across six sampling campaigns, researchers documented 2419 organisms from five zoological groups, identifying 14 dominant species, including Haemulon aurolineatum and Diplodus argenteus. Cluster analysis revealed three ecological zones, with higher biodiversity at the site’s edges (Groups 1 and 3), but these areas also hosted endangered species like Epinephelus marginatus, complicating trail planning. A major concern was the widespread bleaching of the zoanthid Palythoa caribaeorum, a key ecosystem engineer, likely due to rising sea temperatures (+1.68 °C from 1961–2018) and declining chlorophyll-a levels post-2015. Comparisons with past data showed a 0.33 °C increase in species’ thermal preferences over 17 years, alongside lower trophic levels and greater ecological vulnerability, indicating tropicalization from the expanding Brazil Current. While Sepultura Beach’s biodiversity supports diving tourism, conservation efforts must address coral bleaching and endangered species protection. Long-term monitoring is crucial to track warming impacts, and adaptive management is needed for sustainable trail development. The study highlights the urgent need to balance ecotourism with climate resilience in subtropical marine ecosystems. Full article
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28 pages, 3098 KiB  
Article
Geobotanical Study, DNA Barcoding, and Simple Sequence Repeat (SSR) Marker Analysis to Determine the Population Structure and Genetic Diversity of Rare and Endangered Prunus armeniaca L.
by Natalya V. Romadanova, Nazira A. Altayeva, Alina S. Zemtsova, Natalya A. Artimovich, Alexandr B. Shevtsov, Almagul Kakimzhanova, Aidana Nurtaza, Arman B. Tolegen, Svetlana V. Kushnarenko and Jean Carlos Bettoni
Plants 2025, 14(15), 2333; https://doi.org/10.3390/plants14152333 - 28 Jul 2025
Viewed by 323
Abstract
The ongoing genetic erosion of natural Prunus armeniaca populations in their native habitats underscores the urgent need for targeted conservation and restoration strategies. This study provides the first comprehensive characterization of P. armeniaca populations in the Almaty region of Kazakhstan, integrating morphological descriptors [...] Read more.
The ongoing genetic erosion of natural Prunus armeniaca populations in their native habitats underscores the urgent need for targeted conservation and restoration strategies. This study provides the first comprehensive characterization of P. armeniaca populations in the Almaty region of Kazakhstan, integrating morphological descriptors (46 parameters), molecular markers, geobotanical, and remote sensing analyses. Geobotanical and remote sensing analyses enhanced understanding of accession distribution, geological features, and ecosystem health across sites, while also revealing their vulnerability to various biotic and abiotic threats. Of 111 morphologically classified accessions, 54 were analyzed with 13 simple sequence repeat (SSR) markers and four DNA barcoding regions. Our findings demonstrate the necessity of integrated morphological and molecular analyses to differentiate closely related accessions. Genetic analysis identified 11 distinct populations with high heterozygosity and substantial genetic variability. Eight populations exhibited 100% polymorphism, indicating their potential as sources of adaptive genetic diversity. Cluster analysis grouped populations into three geographic clusters, suggesting limited gene flow across Gorges (features of a mountainous landscape) and greater connectivity within them. These findings underscore the need for site-specific conservation strategies, especially for genetically distinct, isolated populations with unique allelic profiles. This study provides a valuable foundation for prioritizing conservation targets, confirming genetic redundancies, and preserving genetic uniqueness to enhance the efficiency and effectiveness of the future conservation and use of P. armeniaca genetic resources in the region. Full article
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24 pages, 5785 KiB  
Article
Phylogenetic Reassessment of Murinae Inferred from the Mitogenome of the Monotypic Genus Dacnomys Endemic to Southeast Asia: New Insights into Genetic Diversity Erosion
by Zhongsong Wang, Di Zhao, Wenyu Song and Wenge Dong
Biology 2025, 14(8), 948; https://doi.org/10.3390/biology14080948 - 28 Jul 2025
Viewed by 242
Abstract
The Millard’s rat (Dacnomys millardi), a threatened murid endemic to Southeast Asian montane rainforests and the sole member of its monotypic genus, faces escalating endangered risks as a Near Threatened species in China’s Biodiversity Red List. This ecologically specialized rodent exhibits [...] Read more.
The Millard’s rat (Dacnomys millardi), a threatened murid endemic to Southeast Asian montane rainforests and the sole member of its monotypic genus, faces escalating endangered risks as a Near Threatened species in China’s Biodiversity Red List. This ecologically specialized rodent exhibits diagnostic morphological adaptations—hypertrophied upper molars and cryptic pelage—that underpin niche differentiation in undisturbed tropical/subtropical forests. Despite its evolutionary distinctiveness, the conservation prioritization given to Dacnomys is hindered due to a deficiency of data and unresolved phylogenetic relationships. Here, we integrated morphological analyses with the first complete mitogenome (16,289 bp in size; no structural rearrangements) of D. millardi to validate its phylogenetic placement within the subfamily Murinae and provide novel insights into genetic diversity erosion. Bayesian and maximum likelihood phylogenies robustly supported Dacnomys as sister to Leopoldamys (PP = 1.0; BS = 100%), with an early Pliocene divergence (~4.8 Mya, 95% HPD: 3.65–5.47 Mya). Additionally, based on its basal phylogenetic position within Murinae, we propose reclassifying Micromys from Rattini to the tribe Micromyini. Codon usage bias analyses revealed pervasive purifying selection (Ka/Ks < 1), constraining mitogenome evolution. Genetic diversity analyses showed low genetic variation (CYTB: π = 0.0135 ± 0.0023; COX1: π = 0.0101 ± 0.0025) in fragmented populations. We propose three new insights into this genetic diversity erosion. (1) Evolutionary constraints: genome-wide evolutionary conservation and shallow evolutionary history (~4.8 Mya) limited mutation accumulation. (2) Anthropogenic pressures: deforestation-driven fragmentation of habitats (>20,000 km2/year loss since 2000) has reduced effective population size, exacerbating genetic drift. (3) Ecological specialization: long-term adaptation to stable niches favored genomic optimization over adaptive flexibility. These findings necessitate suitable conservation action by enforcing protection of core habitats to prevent deforestation-driven population collapses and advocating IUCN reclassification of D. millardi from Data Deficient to Near Threatened. Full article
(This article belongs to the Section Genetics and Genomics)
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14 pages, 2700 KiB  
Article
Seasonal Spatial Distribution Patterns of the Sand Crab Ovalipes punctatus (De Haan 1833) in the Southern Yellow and East China Seas and Predictions from Various Climate Scenarios
by Min Xu, Jianzhong Ling, Haisu Zheng, Xiaojing Song, Zunlei Liu and Huiyu Li
Biology 2025, 14(8), 947; https://doi.org/10.3390/biology14080947 - 28 Jul 2025
Viewed by 248
Abstract
In the past two decades, little information has been updated to understand the resource status of the crab species Ovalipes punctatus in the East China Sea Region. In this study, we conducted surveys in 2018 and 2019 to identify the seasonal spatial distribution [...] Read more.
In the past two decades, little information has been updated to understand the resource status of the crab species Ovalipes punctatus in the East China Sea Region. In this study, we conducted surveys in 2018 and 2019 to identify the seasonal spatial distribution patterns of the economically important sand crab Ovalipes punctatus (De Haan 1833) in the southern Yellow and East China Seas. In the study area, the largest biomass of crabs was observed in the fishing grounds of Dasha and the Yangtze River mouth, and the second largest biomass was detected in the Jiangwai-Zhouwai area. Seasonally, the total biomass order in these areas was summer > autumn & winter > spring, and the mean average individual weight order was spring & summer > winter > autumn. These findings provided maps of the seasonal spatial distribution pattern of the species across seasons, which were then used in climate-change scenario models. Model predictions suggested that O. punctatus might migrate northward and offshore under climate warming conditions, and that the climate scenario SSP585-2100 might be the most negative case, respectively, for the habitat area of gain% minus loss%. These data can be used to develop robust and systematic regional fisheries resource management policies that consider adaptation measures to address the impact of environmental and climate change along China’s coasts and other areas in the world. Full article
(This article belongs to the Special Issue Global Fisheries Resources, Fisheries, and Carbon-Sink Fisheries)
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22 pages, 7937 KiB  
Article
Insights into Biological and Ecological Features of Four Rare and Endemic Plants from the Northern Tian Shan (Kazakhstan)
by Gulbanu Sadyrova, Aisha Taskuzhina, Alexandr Pozharskiy, Kuralai Orazbekova, Kirill Yanin, Nazym Kerimbek, Saule Zhamilova, Gulzhanat Kamiyeva, Ainur Tanybaeva and Dilyara Gritsenko
Plants 2025, 14(15), 2305; https://doi.org/10.3390/plants14152305 - 26 Jul 2025
Viewed by 332
Abstract
This study presents an integrative investigation of four rare and threatened plant species—Taraxacum kok-saghyz L.E. Rodin, Astragalus rubtzovii Boriss., Schmalhausenia nidulans (Regel) Petr., and Rheum wittrockii Lundstr.—native to the Ile Alatau and Ketmen ridges of the Northern Tian Shan in Kazakhstan. Combining [...] Read more.
This study presents an integrative investigation of four rare and threatened plant species—Taraxacum kok-saghyz L.E. Rodin, Astragalus rubtzovii Boriss., Schmalhausenia nidulans (Regel) Petr., and Rheum wittrockii Lundstr.—native to the Ile Alatau and Ketmen ridges of the Northern Tian Shan in Kazakhstan. Combining chloroplast genome sequencing, geobotanical surveys, and anatomical and population structure analyses, we aimed to assess the ecological adaptation, genetic distinctiveness, and conservation status of these species. Field surveys revealed that population structures varied across species, with T. kok-saghyz and S. nidulans dominated by mature vegetative and generative individuals, while A. rubtzovii and R. wittrockii exhibited stable age spectra marked by reproductive maturity and ongoing recruitment. Chloroplast genome assemblies revealed characteristic patterns of plastid evolution, including structural conservation in S. nidulans and R. wittrockii, and a reduced inverted repeat region in A. rubtzovii, consistent with its placement in the IR-lacking clade of Fabaceae. Morphological and anatomical traits reflected habitat-specific adaptations such as tomentose surfaces, thickened epidermis, and efficient vascular systems. Despite these adaptations, anthropogenic pressures including overgrazing and habitat degradation pose significant risks to population viability. Our findings underscore the need for targeted conservation measures, continuous monitoring, and habitat management to ensure the long-term survival of these ecologically and genetically valuable endemic species. Full article
(This article belongs to the Section Plant Ecology)
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27 pages, 792 KiB  
Review
Double-Edged Sword: Urbanization and Response of Amniote Gut Microbiome in the Anthropocene
by Yi Peng, Mengyuan Huang, Xiaoli Sun, Wenqing Ling, Xiaoye Hao, Guangping Huang, Xiangdong Wu, Zheng Chen and Xiaoli Tang
Microorganisms 2025, 13(8), 1736; https://doi.org/10.3390/microorganisms13081736 - 25 Jul 2025
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Abstract
Projections indicate that the global urban population is anticipated to reach 67.2% by 2050, accompanied by a threefold increase in urban built-up areas worldwide. Urbanization has profoundly transformed Earth’s natural environment, notably characterized by the drastic reduction and fragmentation of wildlife habitats. These [...] Read more.
Projections indicate that the global urban population is anticipated to reach 67.2% by 2050, accompanied by a threefold increase in urban built-up areas worldwide. Urbanization has profoundly transformed Earth’s natural environment, notably characterized by the drastic reduction and fragmentation of wildlife habitats. These changes contribute to local species extinction, leading to biodiversity loss and profoundly impacting ecological processes and regional sustainable development. However, within urban settings, certain ‘generalist’ species demonstrate survival capabilities contingent upon phenotypic plasticity. The co-evolution of gut microbiota with their hosts emerges as a key driver of this phenotypic plasticity. The presence of diverse gut microbiota constitutes a crucial adaptive mechanism essential for enabling hosts to adjust to rapid environmental shifts. This review comprehensively explores amniote gut microbial changes in the context of urbanization, examining potential drivers of these changes (including diet and environmental pollutants) and their potential consequences for host health (such as physiology, metabolism, immune function, and susceptibility to infectious and non-infectious diseases). Ultimately, the implications of the gut microbiome are highlighted for elucidating key issues in ecology and evolution. This understanding is expected to enhance our comprehension of species adaptation in the Anthropocene. Full article
(This article belongs to the Special Issue Advances in Host-Gut Microbiota)
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