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Keywords = flower pigmentation

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17 pages, 1288 KB  
Article
Relationship of Color and Antioxidant Capacity with the Content of Secondary Metabolites in Flowers of Crocosmia
by Manuel Piqueras-García, Cristina Cebrián-Tarancón, Gonzalo L. Alonso and Rosario Sánchez-Gómez
Agronomy 2026, 16(3), 286; https://doi.org/10.3390/agronomy16030286 - 23 Jan 2026
Viewed by 190
Abstract
Crocosmia is a genus of bulbous, perennial plants from the Iridaceae family whose characteristic red to orange pigmentation suggests the presence of anthocyanins, flavonoids, and carotenoids—secondary metabolites often associated with antioxidant activity. This study aimed to characterize and compare the major pigment-related metabolites [...] Read more.
Crocosmia is a genus of bulbous, perennial plants from the Iridaceae family whose characteristic red to orange pigmentation suggests the presence of anthocyanins, flavonoids, and carotenoids—secondary metabolites often associated with antioxidant activity. This study aimed to characterize and compare the major pigment-related metabolites in two Crocosmia varieties (Crocosmia masoniorum “Lucifer” and Crocosmia aurea) through chromatographic (HPLC-DAD) and spectrophotometric analyses (UV-Vis), using Crocus sativus L. flowers as a reference matrix. Successfully, the major crocin trans-4-GG, the flavonol kaempferol-3-O-β-sophoroside, and the anthocyanin delphinidin-3-O-β-glucoside were quantified in Crocosmia flowers. Additional metabolites absent in Crocus sativus L. were also identified and quantified. Both Crocosmia varieties exhibited higher antioxidant capacity than Crocus sativus L. flowers, highlighting their potential for future applications in pharmaceutical, nutraceutical, or functional ingredient development. Full article
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19 pages, 7125 KB  
Article
Identification and Characterization of the CRY Gene Family Involved in Safflower Flavonoid Biosynthesis
by Mamar Laeeq Zia, Debin Wang, Zixi Lin, Rubab Arshad, Xiaoyan Wang, Jiao Liu, Jianjiang Wei, Rui Qin and Hong Liu
Agriculture 2026, 16(2), 260; https://doi.org/10.3390/agriculture16020260 - 20 Jan 2026
Viewed by 138
Abstract
The cryptochromes (CRYs) perceive blue light to regulate various developmental and metabolic events. However, the role of CRYs in flavonoid biosynthesis and flower pigmentation in safflower (Carthamus tinctorius L.) remains unknown. In this study, we determined flower color diversity among 485 safflower [...] Read more.
The cryptochromes (CRYs) perceive blue light to regulate various developmental and metabolic events. However, the role of CRYs in flavonoid biosynthesis and flower pigmentation in safflower (Carthamus tinctorius L.) remains unknown. In this study, we determined flower color diversity among 485 safflower genotypes using the integrated CIELAB color space parameters and cluster analysis. On this basis, distinct colors were categorized into four groups, namely white (WW), yellow (YY), orange–red (OR), and yellow–red (YR). A genome-wide association study (GWAS) via 933,444 high-quality SNPs showed CtCRY2 as a flower color variation gene. Subsequently, genomic analysis identified three genes of the CRY family, including CtCRY1.1, CtCRY1.2, and CtCRY2. In silico analysis, such as gene structure, phylogeny and cis-acting elements, suggested CtCRY1.1 as a key candidate in pigment biosynthesis and was, therefore, selected for functional validation. Overexpression of CtCRY1.1 in Arabidopsis accumulated a high flavonoid content, particularly upregulating the expression of CHS, FLS, and ANS, proving its role as a positive regulator of flavonoid biosynthesis in safflower. These findings provide insights into the molecular mechanisms underlying flower color regulation in safflower and highlight CtCRY1.1 as a new target to enhance pigment-related traits in plants. Full article
(This article belongs to the Section Crop Genetics, Genomics and Breeding)
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19 pages, 5989 KB  
Article
Multi-Analytical Approach to Investigate the Polychrome Paintings on Flower Peking Opera Theatre in Bozhou, China
by Wei Liu, Fang Jia, Ting Zhao, Jianhua Huang, Weisha Du and Li Li
Coatings 2026, 16(1), 115; https://doi.org/10.3390/coatings16010115 - 15 Jan 2026
Viewed by 252
Abstract
This article presents a comprehensive analysis of the polychrome paintings on the Flower Peking Opera Theatre in Bozhou, Anhui Province, China. A multi-technique approach was employed, including polarized light microscopy (PLM), X-ray fluorescence (XRF), micro-Raman spectroscopy, X-ray diffraction (XRD), Fourier transform infrared spectroscopy [...] Read more.
This article presents a comprehensive analysis of the polychrome paintings on the Flower Peking Opera Theatre in Bozhou, Anhui Province, China. A multi-technique approach was employed, including polarized light microscopy (PLM), X-ray fluorescence (XRF), micro-Raman spectroscopy, X-ray diffraction (XRD), Fourier transform infrared spectroscopy (FT-IR), scanning electron microscopy with energy-dispersive spectrometry (SEM-EDS), and Herzberg staining to determine the composition and methodologies involved in the formation of the pigment layer, the white primer, and the ground layer. The analysis identified cinnabar (red), both artificial ultramarine and Prussian blue (blue), a mixture of barite and gypsum (white), a mixture of chromite and Prussian blue (green), and carbon black (black) in the pigment layer. The ground layer was found to consist of clay and plant fibers (cotton and hemp), while the white prime layer was primarily composed of barite and gypsum. This research provides insights for future conservation and restoration efforts. Full article
(This article belongs to the Section Environmental Aspects in Colloid and Interface Science)
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19 pages, 3238 KB  
Article
Multi-Omics Analysis Provides Insights into Developmental Tepal Coloration in Gloriosa superba ‘Passion Flame’
by Xinyi Zhou, Kuang Sheng, Tong Wu, Liangsheng Zhang, Yuwei Liang and Xiaojun Chang
Plants 2026, 15(2), 235; https://doi.org/10.3390/plants15020235 - 12 Jan 2026
Viewed by 269
Abstract
Gloriosa superba ‘Passion Flame’ (flame lily) is a distinctive ornamental plant characterized by its striking floral structure and vivid coloration. During flower development, flame lily tepals undergo a pronounced color transition from green at the bud stage to bright red with a yellow [...] Read more.
Gloriosa superba ‘Passion Flame’ (flame lily) is a distinctive ornamental plant characterized by its striking floral structure and vivid coloration. During flower development, flame lily tepals undergo a pronounced color transition from green at the bud stage to bright red with a yellow base at maturity, providing an excellent system for studying flower pigmentation in monocots. Here, we applied a multi-omics approach to examine metabolite accumulation and gene expression dynamics across four stages of flower development. Metabolomic profiling identified 240 flavonoids and four anthocyanins, among which pelargonidin-3-O-glucoside showed the highest relative abundance among red pigmentation. Transcriptome analysis revealed that seven key anthocyanin structural genes showed strong correlations with anthocyanin accumulation. In parallel, several chlorophyll degradation genes, including GsSGR and GsPPH, were upregulated during tepal maturation, suggesting transcriptional activation of chlorophyll degradation pathways concurrent with pigment accumulation. Co-expression network analysis further identified GsMYB75 and GsMYB114 as temporally distinct regulators associated with anthocyanin biosynthesis, acting together with bHLH, NAC, and AP2/ERF transcription factors. This study provides new insights into the pigment regulation in G. superba ‘Passion Flame’ and offers candidate regulatory components for future functional studies and the improvement of ornamental traits in monocotyledonous plants. Full article
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14 pages, 10595 KB  
Article
Light Sources in Hyperspectral Imaging Simultaneously Influence Object Detection Performance and Vase Life of Cut Roses
by Yong-Tae Kim, Ji Yeong Ham and Byung-Chun In
Plants 2026, 15(2), 215; https://doi.org/10.3390/plants15020215 - 9 Jan 2026
Viewed by 281
Abstract
Hyperspectral imaging (HSI) is a noncontact camera-based technique that enables deep learning models to learn various plant conditions by detecting light reflectance under illumination. In this study, we investigated the effects of four light sources—halogen (HAL), incandescent (INC), fluorescent (FLU), and light-emitting diodes [...] Read more.
Hyperspectral imaging (HSI) is a noncontact camera-based technique that enables deep learning models to learn various plant conditions by detecting light reflectance under illumination. In this study, we investigated the effects of four light sources—halogen (HAL), incandescent (INC), fluorescent (FLU), and light-emitting diodes (LED)—on the quality of spectral images and the vase life (VL) of cut roses, which are vulnerable to abiotic stresses. Cut roses ‘All For Love’ and ‘White Beauty’ were used to compare cultivar-specific visible reflectance characteristics associated with contrasting petal pigmentation. HSI was performed at four time points, yielding 640 images per light source from 40 cut roses. The results revealed that the light source strongly affected both the image quality (mAP@0.5 60–80%) and VL (0–3 d) of cut roses. The HAL lamp produced high-quality spectral images across wavelengths (WL) ranging from 480 to 900 nm and yielded the highest object detection performance (ODP), reaching mAP@0.5 of 85% in ‘All For Love’ and 83% in ‘White Beauty’ with the YOLOv11x models. However, it increased petal temperature by 2.7–3 °C, thereby stimulating leaf transpiration and consequently shortening the VL of the flowers by 1–2.5 d. In contrast, INC produced unclear images with low spectral signals throughout the WL and consequently resulted in lower ODP, with mAP@0.5 of 74% and 69% in ‘All For Love’ and ‘White Beauty’, respectively. The INC only slightly increased petal temperature (1.2–1.3 °C) and shortened the VL by 1 d in the both cultivars. Although FLU and LED had only minor effects on petal temperature and VL, these illuminations generated transient spectral peaks in the WL range of 480–620 nm, resulting in decreased ODP (mAP@0.5 60–75%). Our results revealed that HAL provided reliable, high-quality spectral image data and high object detection accuracy, but simultaneously had negative effects on flower quality. Our findings suggest an alternative two-phase approach for illumination applications that uses HAL during the initial exploration of spectra corresponding to specific symptoms of interest, followed by LED for routine plant monitoring. Optimizing illumination in HSI will improve the accuracy of deep learning-based prediction and thereby contribute to the development of an automated quality sorting system that is urgently required in the cut flower industry. Full article
(This article belongs to the Special Issue Application of Optical and Imaging Systems to Plants)
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22 pages, 5585 KB  
Article
Sequence Variations in MYB (v-myb Myeloblastosis Viral Oncogene Homolog) Genes Impair Anthocyanin Biosynthesis and Contribute to Yellow Flower Phenotype in Rehmannia glutinosa
by Jianquan Tang, Qi Liu, Yuetong Liu, Hongyan Gao, Bing He, Ming Yue and Bin Li
Biomolecules 2026, 16(1), 95; https://doi.org/10.3390/biom16010095 - 7 Jan 2026
Viewed by 259
Abstract
The corolla of Rehmannia glutinosa typically exhibits a stable reddish-purple color, but a naturally occurring yellow-flowered variant has recently been identified. To clarify the molecular basis of flower color variant, metabolomics, transcriptomics, and variant analyses were integrated. Metabolomic profiling revealed that the yellow [...] Read more.
The corolla of Rehmannia glutinosa typically exhibits a stable reddish-purple color, but a naturally occurring yellow-flowered variant has recently been identified. To clarify the molecular basis of flower color variant, metabolomics, transcriptomics, and variant analyses were integrated. Metabolomic profiling revealed that the yellow phenotype was associated with lower anthocyanin levels and higher carotenoid levels. Specifically, the decreased cyanidin-3-O-glucoside led to a loss of red, while increased lutein provided the basis for the yellow color. Transcriptomic analysis revealed a downregulation of anthocyanin biosynthetic genes, including CHS, CHI, F3H, DFR, and ANS, in the yellow-flowered variant, and three S6-subgroup R2R3-MYB genes, including the known anthocyanin activator RgMYB41 (gene-DH2020_015992), were downregulated. Variant analysis showed that A12S and G255E in the gene-DH2020_015992 transcription factor were predicted to markedly alter protein conformation and potentially impair regulatory function. Subcellular localization and transcriptional activation assays further supported the functional characterization of gene-DH2020_015992 as a transcription factor. Collectively, these findings suggest that flower color variation in R. glutinosa is driven by MYB-mediated repression of anthocyanin biosynthesis and by carotenoid accumulation. This study provides a comprehensive genetic explanation for flower color variation in R. glutinosa and offers a theoretical foundation for floral pigmentation in plants. Full article
(This article belongs to the Section Molecular Genetics)
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16 pages, 3836 KB  
Article
Genome-Wide Association Study Identifies Candidate Genes Regulating Berry Color in Grape (Vitis vinifera L.)
by Zhongyi Yang, Yangshengkai Xu, Tao Xu, Chao Yu, Congling Fang, Lingling Hu, Liufei Huang, Qianqian Zheng, Yuxuan Zhou, Shuyi Zhou and Yueyan Wu
Agronomy 2026, 16(1), 121; https://doi.org/10.3390/agronomy16010121 - 4 Jan 2026
Viewed by 405
Abstract
Berry color is a critical determinant of grape quality and market value. While the genetic basis of skin color has been extensively studied, the regulatory network controlling flesh coloration remains largely uncharacterized. To systematically dissect the independent genetic architectures underlying these traits, we [...] Read more.
Berry color is a critical determinant of grape quality and market value. While the genetic basis of skin color has been extensively studied, the regulatory network controlling flesh coloration remains largely uncharacterized. To systematically dissect the independent genetic architectures underlying these traits, we performed a genome-wide association study (GWAS) on 130 grape accessions, integrated with spatiotemporal expression profiling, subcellular localization, and functional validation. Our analysis revealed distinct genetic loci for skin and flesh color, confirming their independent regulation. For skin color, GWAS robustly validated VvMYBA2 as a major locus, explaining up to 51.5% of the phenotypic variance. More importantly, for flesh color, we identified and prioritized VvF3′M (Flavonoid 3′-monooxygenase) as a key candidate gene. Heterologous overexpression of VvF3′M in tobacco resulted in a profound 13.5-fold increase in anthocyanin content, suggesting its potential role as a rate-limiting enzyme in flesh pigmentation. Intriguingly, VvF3′M-overexpressing plants also exhibited a significant increase in flower number, suggesting a novel role beyond pigment biosynthesis. This study provides a comprehensive genetic and functional framework for understanding berry coloration, identifies VvF3′M as a prime target for breeding red-fleshed grapes, and reveals unexpected crosstalk between color metabolism and reproductive development. Full article
(This article belongs to the Section Crop Breeding and Genetics)
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22 pages, 2648 KB  
Article
Bioactive Potential of Ptelea trifoliata Flower Extracts: Antioxidant, Enzyme-Modulating, and Wound Healing Activities with Possible Biomedical and Dermal Applications
by Patryk Kuhn, Joanna Sobiak, Tomasz Plech, Natalia Rosiak, Judyta Cielecka-Piontek, Marta Karaźniewicz-Łada and Elżbieta Studzińska-Sroka
Appl. Sci. 2026, 16(1), 88; https://doi.org/10.3390/app16010088 - 21 Dec 2025
Viewed by 347
Abstract
Ptelea trifoliata L. is a perennial plant of the Rutaceae family and contains secondary metabolites with potential biological relevance. Due to limited information on its activity, the objective of this study was to evaluate the biological properties of its flower extracts and to [...] Read more.
Ptelea trifoliata L. is a perennial plant of the Rutaceae family and contains secondary metabolites with potential biological relevance. Due to limited information on its activity, the objective of this study was to evaluate the biological properties of its flower extracts and to determine their phytochemical composition. Flowers were dried and subjected to ultrasound-assisted extraction using methanol, 60% methanol and water. LC–MS/MS was used for qualitative profiling, HPLC for quantitative determination, and spectrophotometry for measuring total phenolic and flavonoid content. The antioxidative capacity of the extracts was determined using DPPH, CUPRAC, FRAP, and iron chelation assays. Enzymatic inhibition analyses were performed for hyaluronidase, indicative of anti-inflammatory properties, and tyrosinase, associated with pigmentation mechanisms. The wound-healing capacity was evaluated in vitro using a scratch assay. Our research revealed the highest levels of polyphenols in the 60% methanol extract and of flavonoids in the methanol extract. The occurrence of chlorogenic acid, rutin, hyperoside, and astragalin was also demonstrated. Both methanol and 60% methanol extracts demonstrated antioxidant effects. The methanol extract showed the greatest hyaluronidase inhibition, while the 60% methanol extract was the most effective in suppressing tyrosinase activity and promoting wound closure. Principal component analysis showed that the contents of polyphenols or flavonoids were associated with enzyme-inhibitory or antioxidant activities. Moreover, the 60% methanol and water extracts exhibited notable wound healing properties. These results highlight the antioxidant, enzyme-modulating and regenerative potential of P. trifoliata flower extracts, suggesting their possible use in biomedical and dermatological applications. Full article
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17 pages, 2960 KB  
Article
Paper-Based Colorimetric pH Test Strip Using Bio-Derived Dyes
by Aramis A. Sánchez, Darwin Castillo, Grettel Riofrío-Cabrera, Greysy Jaramillo and Vasudevan Lakshminarayanan
Biosensors 2025, 15(12), 816; https://doi.org/10.3390/bios15120816 - 16 Dec 2025
Viewed by 845
Abstract
Natural dyes have emerged as a promising alternative to synthetic dyes for industrial applications due to their advantages, namely, easy availability, low cost, and environmental friendliness. In this sense, natural dyes, due to their potential to react over the pH range, could offer [...] Read more.
Natural dyes have emerged as a promising alternative to synthetic dyes for industrial applications due to their advantages, namely, easy availability, low cost, and environmental friendliness. In this sense, natural dyes, due to their potential to react over the pH range, could offer an alternative to conventional pH measuring techniques for industrial products, such as potentiometers, sensors, or indicator drops. Therefore, this project aims to evaluate the potential of several natural organic dyes in response to changes in pH and develop an indicator for determining pH grades. We extracted and analyzed the pigments of forty natural vegetable species using two extraction methods with a mixture of solvents, specifically 70% MeOH/30% H2O. The results find that pigments of cabbage, hibiscus flower, radish, and turmeric in their dry state exhibit the best reaction over a broad pH range, and color can be easily distinguished according to its level. These findings demonstrate the potential of natural dyes as a novel approach for pH verification, providing a sustainable and cost-effective alternative to conventional techniques. Full article
(This article belongs to the Section Biosensor Materials)
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21 pages, 10278 KB  
Article
Transcription Factor TeMADS6 Coregulates Carotenoid Biosynthesis and Chlorophyll Degradation Resulting in Yellow-Green Petal Color of Marigold (Tagetes erecta)
by Chunling Zhang, Ke Zhu, Chujun Huang, Luan Ke, Yafeng Wen, Hang Li, Chaolong Yang, Zhengguo Tao and Yanhong He
Plants 2025, 14(24), 3763; https://doi.org/10.3390/plants14243763 - 10 Dec 2025
Cited by 1 | Viewed by 428
Abstract
Marigold (Tagetes erecta) is an important ornamental and industrial crop valued for its high lutein content. Although petal pigmentation during inflorescence development involves coordinated chlorophyll degradation and carotenoid biosynthesis, the transcriptional mechanisms regulating these processes remain poorly understood. Here, we identified [...] Read more.
Marigold (Tagetes erecta) is an important ornamental and industrial crop valued for its high lutein content. Although petal pigmentation during inflorescence development involves coordinated chlorophyll degradation and carotenoid biosynthesis, the transcriptional mechanisms regulating these processes remain poorly understood. Here, we identified a MADS-box transcription factor, TeMADS6, that coordinately regulates chlorophyll and carotenoid metabolism in marigold. Constitutive overexpression of TeMADS6 resulted in yellow-green petals. HPLC analysis revealed that lycopene, antheraxanthin, violaxanthin, zeaxanthin, and lutein levels were substantially reduced in TeMADS6-overexpression lines, while chlorophyll content was significantly increased compared with wild-type plants. Transcriptome profiling revealed strong repressions of the carotenoid biosynthetic genes TePSY1 and TeHYDB in transgenic florets. Moreover, the chlorophyll degradation gene TeNYC1 and TePPH2 were significantly downregulated, whereas TeSGR2 was upregulated. Together, these findings demonstrate that TeMADS6 acts as a dual-function transcriptional regulator controlling both chlorophyll degradation and carotenoid biosynthesis. This study provides new genetic resources for manipulating petal color and enhancing lutein accumulation in marigold, and advance understanding of the transcriptional networks orchestrating pigment metabolism during flower development. Full article
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16 pages, 7438 KB  
Article
Integrated Omics Analysis Revealed the Differential Metabolism of Pigments in Three Varieties of Gastrodia elata Bl
by Xiaohua Li, Huaijing Zhu, Bingbing Zhang and Dahui Liu
Int. J. Mol. Sci. 2025, 26(24), 11839; https://doi.org/10.3390/ijms262411839 - 9 Dec 2025
Viewed by 438
Abstract
Gastrodia elata Blume is a well-known traditional Chinese medicine. The color of flower and flower stalk are important characteristics in the classification of G. elata. However, the mechanisms of pigment formation in different types of G. elata are not yet elucidated. To [...] Read more.
Gastrodia elata Blume is a well-known traditional Chinese medicine. The color of flower and flower stalk are important characteristics in the classification of G. elata. However, the mechanisms of pigment formation in different types of G. elata are not yet elucidated. To understand this, targeted metabolomics as well as transcriptomics analyses were carried out in this study. The differential accumulation and the typical components of pigments in different types of G. elata were elucidated. According to our research, the accumulation of carotenoids rather than anthocyanins likely contributes to the pigment content in G. elata. The different accumulations of carotenoids including violaxanthin, lycopene, α-carotene, and α-cryptoxanthin are the main reasons that contribute to the color differences in the flowers and flower stalks of these three G. elata varieties. Integrated multi-omics analysis enriched 50 and 17 differential genes in the flavonoid–anthocyanin and carotenoid biosynthesis pathways, respectively. Among these, PSY, PDS, CCD, UGT, and ANR were identified as critical genes responsible for the differential pigment accumulation in G. elata varieties, while the MYB TFs were tightly associated with main genes expression and content of carotenoids. Overall, this study enhances the current understanding of pigments’ metabolites profiles and contributes valuable insights into the molecular mechanisms underlying G. elata carotenoid biosynthesis; these findings also provide valuable guidance for future carotenoid biofortification and molecular breeding in G. elata. Full article
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21 pages, 1035 KB  
Article
Blue Light Enhances Photosynthetic Efficiency and Antioxidant Capacity in Mullein (Verbascum phlomoides L.) Seedlings
by Monika Tkalec Kojić, Ivana Varga, Josipa Jović, Miro Stošić, Mario Đurić, Tomislav Vinković, Boris Ravnjak, Nada Parađiković and Antonela Markulj Kulundžić
Agriculture 2025, 15(22), 2385; https://doi.org/10.3390/agriculture15222385 - 19 Nov 2025
Viewed by 656
Abstract
The orange mullein is a biennial plant whose tall yellow flower spikes contain mucilage, saponins, and other medicinal compounds that have a beneficial effect on respiratory problems. As light quality is known to influence plant morphology and physiology, with effects often depending on [...] Read more.
The orange mullein is a biennial plant whose tall yellow flower spikes contain mucilage, saponins, and other medicinal compounds that have a beneficial effect on respiratory problems. As light quality is known to influence plant morphology and physiology, with effects often depending on the species, understanding these responses in mullein is of particular interest. Therefore, this study aimed to investigate the combined effects of different light-emitting diodes (white, red and blue) and their corresponding photon flux densities (PPFD) on the morphology, pigment composition, antioxidant activity, fluorescence parameters and OJIP transient curves in mullein (Verbascum phlomoides L.) seedlings. Seedlings grown under blue light, which had relatively higher PPFD, showed the greatest root length, leaf number, leaf and root fresh and dry biomass. Red light, with lower PPFD, resulted in the lowest values for these parameters. Compared to white light, pigment analysis showed that blue light increased chlorophyll a, total chlorophyll, carotenoid content, and the Chl a/b ratio. Also, blue light enhanced antioxidant activity, as well as the accumulation of phenolic compounds and flavonoids, indicating that it appeared to enhance the synthesis of secondary metabolites under this spectrum. In contrast, seedlings under red light exhibited the lowest ferric reducing antioxidant power values and tended to reduce levels of phenols and flavonoids, indicating a weaker antioxidative response. It was found that white light appeared to enhance the photochemical activity of photosystem II (PSII) and energy dissipation. Blue light improved linear electron transport, photosystem I (PSI) activity and overall photosynthetic performance. Red light preferentially increased electron flow towards the final acceptors of PSI, affecting the terminal part of the electron transport chain. Analysis of OJIP curves revealed spectrum and intensity-specific changes in the L, K, H, and G bands, demonstrating that light treatments with differing PPFDs selectively modulate PSII and PSI function. Full article
(This article belongs to the Special Issue The Effects of LED Lighting on Crop Growth, Quality, and Yield)
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24 pages, 1390 KB  
Article
Black Rice Performance Under Water Deficit Conditions and Genotype X Environment Interactions
by Aloysha Brunet-Loredo, Abdelhalim Elazab, Karla Cordero-Lara, Paula Careaga and Miguel Garriga
Plants 2025, 14(22), 3459; https://doi.org/10.3390/plants14223459 - 12 Nov 2025
Viewed by 621
Abstract
Rice is a staple food grown worldwide. While white rice varieties have been extensively studied, there is limited information on the performance of pigmented rice genotypes and their tolerance to water deficit. This study evaluated nineteen black rice genotypes and one white cultivar [...] Read more.
Rice is a staple food grown worldwide. While white rice varieties have been extensively studied, there is limited information on the performance of pigmented rice genotypes and their tolerance to water deficit. This study evaluated nineteen black rice genotypes and one white cultivar over three years under contrasting water regimes: traditional flooding and non-flood irrigation (NFI). Genotype–environment interactions and their impact on agronomic, yield, and grain quality traits were assessed. Black genotypes under NFI showed reduced flowering and grain quality. The average yield was 31% lower than the white cultivar. Significant genetic correlations were found between grain yield and days to anthesis (DSA), grain weight (TGW), chalkiness (CHA), and translucency (TRAN), with high broad-sense heritability (H2 > 0.9). Most traits exhibited high heritability (H2 > 0.7), indicating strong genetic stability. Grain yield (GR) was highly and negatively correlated with percent sterility (PS) (r = −0.84) and had a heritability of 0.76. Environmental conditions significantly influenced yield, confirming the potential for selecting water stress–tolerant genotypes. These findings provide valuable insights into black rice breeding and optimizing water management practices to support sustainable production. To our knowledge, this study is the first to evaluate the performance of a diverse set of black rice genotypes across multiple seasons under contrasting water regimes in a Mediterranean environment. Full article
(This article belongs to the Special Issue Responses of Crops to Abiotic Stress—2nd Edition)
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20 pages, 4659 KB  
Article
Integrated Transcriptomic and Metabolomic Analyses of the Response of Lutein Accumulation in Marigold Petals to Light Intensity
by Haimin Zhang, Hong Qiu, Meng Xue and Palinuer Aiwaili
Genes 2025, 16(11), 1350; https://doi.org/10.3390/genes16111350 - 9 Nov 2025
Viewed by 624
Abstract
[Background] Marigold (Tagetes erecta L.) is the main source of the natural pigment lutein. [Methods] In this study, Marigold served as the experimental material for systematic observation of floral organ development. Based on floral morphology and lutein content, the full-flowering stage was [...] Read more.
[Background] Marigold (Tagetes erecta L.) is the main source of the natural pigment lutein. [Methods] In this study, Marigold served as the experimental material for systematic observation of floral organ development. Based on floral morphology and lutein content, the full-flowering stage was identified as the optimal harvesting period. [Results] Under different light intensity gradients (30–1500 μmol·m−2·s−1), the highest lutein content in petals occurred at ≈500 μmol·m−2·s−1. Increased light intensities promoted flowering and enlarged flower diameter while significantly shortening the growth cycle. Transcriptome analysis revealed that light intensity variation markedly influenced the expression of genes related to metabolic pathways, plant hormone signal transduction, and carotenoid biosynthesis, and enriched transcription factor families including bHLH, MYB, NAC, and WRKY. Metabolomic profiling identified lutein esters, such as lutein dimyristate and lutein dipalmitate, as the dominant accumulated forms, with their contents positively correlated with light intensity; under high light, intermediate metabolites, including α-cryptoxanthin and zeaxanthin, were significantly up-regulated. [Conclusions] This study clarifies the molecular mechanism by which light intensity precisely regulates lutein accumulation through coordinated synthesis, esterification, and degradation pathways, offering a theoretical foundation for light-regulated cultivation of T. erecta L. and efficient lutein production. Full article
(This article belongs to the Section Plant Genetics and Genomics)
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19 pages, 2297 KB  
Article
Genotype-Specific Responses to Drought During Seed Production in Carrot: Biochemical, Physiological, and Seed Quality Evaluation
by Barbara Jagosz, Małgorzata Czernicka, Iwona Kamińska, Emilia Wilmowicz, Agata Kućko, Sylwester Smoleń, Małgorzata Kapusta, Joanna Kocięcka, Stanisław Rolbiecki, Roman Rolbiecki and Leszek Róg
Int. J. Mol. Sci. 2025, 26(21), 10642; https://doi.org/10.3390/ijms262110642 - 31 Oct 2025
Viewed by 560
Abstract
Drought stress during the reproductive phase substantially reduces seed yield and quality, posing a major challenge to sustainable crop production under climate change. This study investigated the effects of drought stress at the flowering stage on selected biochemical and physiological parameters in 18 [...] Read more.
Drought stress during the reproductive phase substantially reduces seed yield and quality, posing a major challenge to sustainable crop production under climate change. This study investigated the effects of drought stress at the flowering stage on selected biochemical and physiological parameters in 18 carrot accessions. To describe the long-term consequences of drought comprehensively, we examined seed quality parameters. Our analyses revealed that stress responses are highly dependent on the genotype and the parameter examined. Regarding antioxidant responses and potential tissue damage caused by drought, ‘Dolanka’, DC97, DC265, DC359, DC522, DC701, DC704, and DC720 exhibited the highest tolerance. The photosynthetic apparatus and pigments were maintained under stress in DC233, DC522, DC717, and DC728. Germination parameters served as reliable indicators of stress tolerance in DC97, DC359, DC432, DC522, DC701, and DC722 accessions. Based on these findings and detailed discussion of the results, we conclude that tolerance/sensitivity assessment of carrot genotypes should consider the holistic response of the plant rather than individual parameters. Through overall assessment, we recommended DC522 accession as the most drought-tolerant, given its enhanced ROS (Reactive Oxygen Species) scavenging mechanisms, increased chloroplast pigments accumulation, and superior germination parameters under drought conditions. Conversely, DC295 should not be cultivated under water-deficient conditions due to its impaired ability to detoxify ROS, altered photosynthetic activity, and disrupted seed germination under such conditions. These results collectively highlight the potential for selecting drought-tolerant carrot genotypes in breeding programs targeting improved seed performance under water-limited conditions, thereby supporting the development of resilient cultivars adapted to future climate challenges. Full article
(This article belongs to the Section Molecular Plant Sciences)
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