Search Results (484)

Background/objectives: Tropoelastin is a highly hydrophobic extracellular matrix protein responsible for the extensibility and elastic recoil of various organs. The Windkessel effect in blood vessels dampens pressure variations during the cardiac cycle to provide continuous perfusion of tissues, such as the fragile gill capillaries in fish. The teleost-specific whole-genome duplication was followed by structural and functional divergence of the duplicated tropoelastins, of which ElnB confers the uniquely low stiffness of the bulbus arteriosus. Methods: We have examined the diversity of tropoelastins in all major fish clades by searching for tropoelastin (eln) genes in the sequenced genomes. Duplication of eln genes in tetraploid salmonids and cyprinids was examined by maximum likelihood phylogenetic analysis, and cardiac eln expression in rainbow trout was quantified by qPCR. Results: The tetraploid salmonid genomes harbor two elna genes but a single elnb, except for the tandem duplicated elnb genes in sockeye salmon and lake whitefish, while the tetraploid common carp possesses four elna and elnb genes on separate chromosomes. Rainbow trout showed strong elastin staining in the larval bulbus and ventral aorta, and the bulbar expression of elnb was 15 times higher than the ventricular levels in juvenile fish. The expression of elna1 and elna2 was also significantly higher in the bulbus, and together their transcript levels were almost similar as the elnb levels. The overall hydrophobicity of the fish tropoelastins differed considerably among the species ranging from 28.6% in Emerald rockcod ElnB to 56.3% in lesser devil ray Eln, but showed no significant difference with the tetrapods examined, except for the lower hydrophobicity of teleost ElnB. Conclusions: The inclusion of tetrapods in the analysis revealed a positive relationship between ventral aortic blood pressure and tropoelastin hydrophobicity. Full article

Germ cell xenotransplantation is a promising tool for enhancing aquaculture production and supporting the conservation of declining fish species. A major limitation is the reliable identification of germ stem cells, which remains challenging due to the scarcity of validated molecular markers. This study assessed the suitability of different immunohistochemical approaches for identifying ovarian germ stem cells (OGSCs) in three Mediterranean species of commercial interest: European hake (Merluccius merluccius), meagre (Argyrosomus regius), and flathead grey mullet (Mugil cephalus). Among the antibodies tested (anti-OCT4, anti-VASA, anti-Sox2), only anti-VASA and anti-Sox2 labeled cells with morphological features consistent with OGSCs, although staining intensity, specificity, and cross-reactivity with early oocytes varied across species. In parallel, preliminary protocols for OGSC isolation and in vitro proliferation were developed for European hake and meagre. Enzymatic dissociation with collagenase, followed by Ficoll-Paque density separation and culture in Leibovitz’s L-15 medium supplemented with 2% fetal bovine serum at 25 °C, resulted in the highest OGSC recovery and detectable increases in proliferating cells. A sequential pre-plating step enhanced enrichment in meagre but caused substantial cell loss in hake. Overall, this study provides a comparative evaluation of female germline stem cell markers in these species, contributing to future surrogate reproduction and germplasm conservation strategies. Full article

Urban streams are subjected to a variety of impacts from stormwater runoff, channelization, routing through culverts, and highly modified riparian zones, all of which can have negative effects on stream habitats and resident fish communities. Coldwater trout streams in urban areas may be especially impacted due to their normally low fish diversity and the higher intolerance of those species to such factors as stream temperature, dissolved oxygen concentrations, and water chemistry. Fish communities were examined at two sites in each of four coldwater trout streams in southeastern Minnesota USA: one site within the residential/commercial areas of a city and one site outside of the city limits in rural (agricultural) areas. Fish were surveyed (all fish counted and identified) in representative 150 to 200 m sections at each stream site with a backpack electrofisher. Data were used to produce Simpson and Shannon diversity indices, taxa richness values, a coldwater index of biotic integrity (IBI) score and rating for each site, and an NMDS plot using fish communities to compare between urban and rural stream sections. Overall, fish representing 17 different species and 11 families were found at the sites examined. Brown trout (Salmo trutta) comprised 65% of the total catch and was the only species collected at every site. Average fish species richness was nearly three times higher at urban sites than at rural sites, and Simpson and Shannon diversities were also significantly (four to five times) higher at urban compared to rural sites. However, coldwater IBI scores were significantly higher at rural (average = 93, good rating) than at urban (average score = 59, a fair rating) sites, indicating better coldwater biotic integrity in rural stream sections. A NMDS plot indicated that fish communities at urban sites were more similar to one another than they were to rural site communities; separation between urban and rural sites was largely influenced by species exclusive to urban sites. Reduced biotic integrity and altered fish community composition in urban streams likely resulted from a combination of factors including modified stream habitat and hydrology, warmer water temperatures, and urban runoff. Full article

The reproductive biology of the whale shark (Rhincodon typus), the world’s largest fish, remains poorly understood, in large part due to the rarity of observations of neonates and of breeding behaviours. Although several regions in Indonesia, including Saleh Bay (West Nusa Tenggara Province), have been identified as aggregation and sighting sites for juvenile whale sharks (2–7 m total length, TL), smaller individuals from these potential nursery areas have not been previously documented. In August 2024, fishermen operating lift-net fishing vessels (bagans) in eastern Saleh Bay reported five separate sightings of a small whale shark estimated at 1.2–1.5 m TL and approximately four months old. Subsequently, on 6 September 2024, a male neonate measuring approximately 135–145 cm TL, estimated to be around four months old, was incidentally caught inside a bagan lift-net. These observations represent the first records of neonatal whale sharks in Indonesia and among the smallest free-swimming individuals ever documented globally, and suggest that Saleh Bay may serve as a pupping and early nursery area for whale sharks. These findings highlight the ecological significance of Saleh Bay for the early life stages of whale sharks and underscore the importance of collaborative monitoring and citizen science involving bagan fishermen in advancing the research and conservation of this endangered species. Full article

This study explores how research on carbon capture technologies (CCTs) has developed over time and shows how semantic text mining can improve the analysis of technology trajectories. Although CCTs are widely viewed as essential for net-zero transitions, the literature is still scattered across many subthemes, and links between engineering advances, infrastructure deployment, and policy design are often weak. Methods that rely mainly on citations or keyword frequencies tend to overlook contextual meaning and the subtle diffusion of ideas across these strands, making it difficult to reconstruct clear developmental pathways. To address this problem, we ask the following: How do CCT topics change over time? What evolutionary mechanisms drive these transitions? And which themes act as bridges between technical lineages? We first build a curated corpus using a PRISMA-based screening process. We then apply BERTopic, integrating Sentence-BERT embeddings with UMAP, HDBSCAN, and class-based TF-IDF, to identify and label coherent semantic topics. Topic evolution is modeled through a PCC-weighted, top-K filtered network, where cross-year connections are categorized as inheritance, convergence, differentiation, or extinction. These patterns are further interpreted with a Fish-Scale Multiscience mapping to clarify underlying theoretical and disciplinary lineages. Our results point to a two-stage trajectory: an early formation phase followed by a period of rapid expansion. Long-standing research lines persist in amine absorption, membrane separation, and metal–organic frameworks (MOFs), while direct air capture emerges later and becomes increasingly stable. Across the full period, five evolutionary mechanisms operate in parallel. We also find that techno-economic assessment, life-cycle and carbon accounting, and regulation–infrastructure coordination serve as key “weak-tie” bridges that connect otherwise separated subfields. Overall, the study reconstructs the core–periphery structure and maturity of CCT research and demonstrates that combining semantic topic modeling with theory-aware mapping complements strong-tie bibliometric approaches and offers a clearer, more transferable framework for understanding technology evolution. Full article

In the context of the ten-year fishing ban on the Yangtze River, illegal poaching for profit persists. To support the enforcement of this ban and protect the river’s ecosystem, an efficient and precise method for distinguishing between wild and farmed common carp is essential. This study utilized ultra-high-performance liquid chromatography-tandem mass spectrometry (UHPLC-MS/MS) combined with metabolomics technology to analyze and compare the metabolic differences between wild and farmed common carp. Principal component analysis (PCA) and orthogonal partial least squares discriminant analysis (OPLS-DA) revealed a clear separation between the two groups, which was further verified by metabolic fingerprint profiles. Moreover, 16 metabolites with high discriminatory potential were identified from 491 differentially metabolites, such as phytosphingosine, succinic acid and threonine. In addition, a cluster analysis of the differential metabolites classified them into four classes: peptides, fatty acyls, steroids and steroid derivatives, and glycerophospholipids. Furthermore, candidate biomarkers, including 3-hydroxybutyrylcarnitine, 3-hydroxyhexanoylcarnitine and jasminoside were identified to potential distinguish wild populations. To our knowledge, this is the first study to apply metabolomics technology to differentiate wild from farmed common carp, providing a new theoretical basis for ecological restoration efforts in the context of the Yangtze River fishing ban. Full article

Microsporidia are a group of obligate intracellular parasites with a broad host range. These parasites can cause mild to severe harm to their hosts, making them important targets for research. However, studies on common wild-caught fish from the Atlantic Eastern Central Zone (FAO Area 34) remain scarce. 576 individuals across 35 fish species from this region were collected from local markets between 2011 and 2019. The specimens were dissected, and lesions were examined using histology, wet mounts, PCR, and transmission electron microscopy. However, microsporidian infection was detected only in round sardinella (Sardinella (S.) aurita), with 19 out of 39 individuals infected. Parasitized fish weighed nearly half as much as non-infected ones, indicating a potentially significant economic impact. Molecular and ultrastructural analyses identified the parasite as Glugea (G.) thunni, a species previously reported only from the Mediterranean Sea. This study provides the first record of G. thunni in FAO Area 34, with round sardinella likely serving as its primary host. This and other closely related sequences may represent a single taxonomic entity or, more likely, a complex of a few cryptic species geographically separated across the Mediterranean Sea and the eastern and western North Atlantic regions. Full article

Hemocytes (insect blood cells) consist of several morphological types and perform a variety of physiological processes, including immune responses. However, we do not know how many cell types are functionally differentiated in hemocytes or how they perform independent physiological processes. To address this fundamental question, we analyzed hemocyte transcripts with a single-cell RNA-sequencing (scRNA-Seq) technique. The hemocytes were collected from larvae of a lepidopteran insect, Spodoptera exigua, in which four different hemocyte types were morphologically recognized. scRNA-Seq discriminated 24 hemocyte clusters based on the transcripts of each cell. The clusters were separated into seven functional groups predicted from the top three highly expressed and annotated genes in each cluster: active protein synthesis (12 clusters), apoptosis (5 clusters), melanization (2 clusters), modulating cell shape (6 clusters), antimicrobial peptide production (9 clusters), calcium homeostasis (8 clusters), and cell repairing (1 cluster). Signal components of Toll/IMD immune pathways were variably expressed among the clusters. Biosynthetic genes associated with oxylipin immune mediators were specifically expressed among the clusters. Immune effectors such as melanization and apoptosis were expressed in specific hemocyte clusters. Specifically expressed genes that discriminate hemocyte types were used to develop fluorescence in situ hybridization (FISH) markers. In addition, five new hemocyte groups, which were not among the four known hemocyte types in the transcript profile, were identified and discriminated with their specific FISH markers. The hemocyte clusters underwent dynamic changes upon immune challenge. A trajectory analysis using the transcriptome suggests at least three different hemocyte differentiation pathways. These results indicate that the hemocytes of S. exigua are functionally highly differentiated and exhibit a dynamic transition in response to environmental changes. Full article

The port of Gaženica, managed by the Port Authority of Zadar, is open to public traffic of special economic interest to the Republic of Croatia. Situated outside Zadar’s city centre, with convenient access to the airport and A1 highway, this port presents significant opportunities for Zadar County’s economic growth. While also serving as a cargo and fishing port, as the second-largest passenger port in Croatia, the port of Gaženica prioritises the development of cruise ship traffic. The expansion of intermodal traffic is being facilitated through the development of a multipurpose terminal to accommodate general, roll-on/roll-off, and containerised cargo (full and empty containers). The rising number of passenger ships—particularly cruise ships—along with the increasing passenger, vehicle, and cargo traffic, poses a significant risk of pollution due to dust, noise, greenhouse gases, and other pollutants. Considering these risks, the use of alternative energy sources, decarbonisation of maritime transport, the separation of waste by type, and the proper handling and disposal of ship waste are of utmost importance. The aim of this study is to present and analyse the green transition process of the port of Gaženica through the results that have been achieved or are yet to be achieved through the implementation of green projects by the Port Authority of Zadar. For this purpose, a mixed-methods approach combining project analysis and the qualitative analysis of emissions data is used. It is important to highlight that the method of interviews with relevant representatives of institutions involved in the project was also used to gain insight into financial and infrastructural challenges, the accessibility of certain data, and potential improvements in implementation. The research results indicate that the port of Gaženica has completed four green projects, while another four are currently being implemented, with their completion expected by 2026. The research concludes that it is necessary to strengthen environmental awareness regarding proper waste disposal among all stakeholders in maritime transport, including the local community, businesses, and local authorities. The results demonstrate a need to focus on certification with the aim of strengthening the green transition process through involvement in the EcoPorts and Green Award certification schemes. It is also necessary to actively improve the public availability of data from the base station in the port of Gaženica to inform the public about environmental impacts in real time (24/7) while facilitating data collection for statistical reporting purposes. Full article

The traditional use of iced trash fish (IF) in Chinese mitten crab (Eriocheir sinensis) aquaculture raises sustainability concerns, but the shift to formulated feeds (FF—a commercial compound feed specifically designed to meet nutritional requirements by blending multiple ingredients and containing a balance of nutrients) is often hindered by fears of compromising its prized flavor. This study aimed to comprehensively evaluate whether a commercial formulated feed could effectively replace IF without diminishing flavor quality, hypothesizing that FF would alter the intestinal volatile profile, thereby influencing muscle flavor. Male crabs were fed either IF or FF for eight weeks. Muscle flavor was assessed using sensory evaluation, electronic nose (E-nose), and gas chromatography–ion mobility spectrometry (GC–IMS). Volatile compounds in intestinal chyme were also analyzed by GC–IMS to explore potential transfer mechanisms. The results indicated that crabs fed with FF showed higher sensory scores for sweetness. Additionally, the E-nose analysis revealed a clear separation trend between dietary groups and showed markedly higher sensor response values for aromatic compounds, biogenically derived compounds and Maillard reaction products, sulfur-containing organic compounds, aliphatic hydrocarbons, total volatile organic compounds, alcohols and organic solvents, and alkenes in the FF group compared to the IF group. Thirty-four volatiles were discovered in the muscle. Statistical analysis (independent samples t-test) showed that the FF group exhibited significantly elevated levels of 3-methylbutanal-M, propanal, (E)-2-pentenal, 2,3-pentanedione, and pentan-1-ol-M, whereas the IF group exhibited significantly elevated levels of 2-hexanone, dihydro-2(3H)-furanone, butyl acetate, ethyl 2-methylpropanoate, and phenol (p < 0.05). Fourty-eight volatiles were identified in the intestinal chyme. Propanal and ethyl 2-methylpropanoate were the dominant odor contributors based on correlation network analysis. Strong correlations were identified between the flavor profiles of intestinal chyme and muscle, suggesting a potential transfer or transformation of volatiles. This work provides a scientific basis for optimizing aquafeed formulations to ensure sustainable crab production without sacrificing end-flavor quality. Full article

Rising ocean temperatures due to climate change, combined with the intensification of anthropogenic activity, may lead to changes in the physiology and distribution of native species. Compounding climate stress, microplastic particles (MPs) enter the oceans through wastewater and the breakdown of macroplastics. Depending on their composition, they can be harmful and act as a vehicle for toxic substances, although their effects on native Antarctic and subantarctic species are unknown. Notothenioid fish are members of this group and are found inside and outside Antarctica, such as the Harpagifer, which has adapted to the cold and is particularly sensitive to thermal increases. Here, we aimed to evaluate the innate immune response in the head kidney, spleen, and foregut of two notothenoid fish, Harpagifer antarcticus and Harpagifer bispinis, exposed to elevated temperatures and PVC (polyvinyl chloride) microplastics. Adults from both species were collected on King George Island (Antarctica) and Punta Arenas (Chile), respectively. Specimens were assigned to a control group or exposed to a temperature increase (TI) or PVC microplastics (MPs), separately or in combination (MPs + TI). MP exposures were oral (gavage) for 24 h or aqueous (in a bath) for 24 and 48 h. Using real-time qPCR, we evaluated the relative gene expression of markers involved in the innate immune response, including tlr2 (toll-like receptor 2), tlr4 (toll-like receptor 4), myd88 (myeloid differentiation factor 88), nfkb (nuclear factor kb), il6 (interleukin 6), and il8 (irterleukin 8). We found differences between treatments when H. antarcticus and H. bispinis were exposed independently to MPs or thermal increase (TI) in the experiment with a cannula, showing an up-regulation in transcripts. In contrast, a down-regulation was observed when exposed in combination to MP + TI, which looked to be tissue-dependent. However, transcripts related to innate immunity in the bath experiment increased when exposure to both stressors was combined, mostly at 48 h. These results highlight the importance of evaluating the effects of multiple stressors, both independently and in combination, and whether these species will have the capacity to adapt or survive under these conditions, especially in waters where temperature is increasing and pollution is also rising, primarily from MP-PVC, a plastic widely used in various industries and among the population. Full article

Marine-derived bioactive peptides (MBPs) are emerging as promising natural agents for regulating inflammatory responses. MBPs, typically obtained through enzymatic hydrolysis of proteins from various marine organisms such as fish, mollusks, and algae, exhibit diverse biological activities, including antioxidant, immunomodulatory, and anti-inflammatory effects. The ability of MBPs to modulate key inflammatory mediators such as TNF-α, IL-6, and COX-2, primarily through pathways like NF-κB and MAPK, highlights the therapeutic potential of MBPs in managing chronic inflammatory diseases. However, most existing studies are confined to in vitro assays or animal models, with limited translation to human clinical applications. This review explores the stability, bioavailability, and metabolic rate of MBPs under physiological conditions, which remain poorly understood. In addition, a lack of standardized protocols for peptide extraction, purification, and efficacy evaluation hinders comparative analysis across studies and also different proteomics approaches for separation, purification, identification, and quantification of marine-derived peptides with therapeutic properties. The structure–function relationship of MBPs is also underexplored, limiting rational design and targeted applications in functional foods or therapeutic products. These limitations are largely due to a lack of consolidated information and integrated research efforts. To address these challenges, this review summarizes recent progress in identifying MBPs with anti-inflammatory potentials, outlines key mechanisms, and highlights current limitations. Additionally, this review also emphasizes the need to enhance mechanistic understanding, optimize delivery strategies, and advance clinical validation to fully realize the therapeutic potential of MBPs. Full article

Scientific awareness is rising regarding fish and sea invertebrates’ sensitivity to the sound field’s particle motion component. The AquaVib, a distinctive laboratory setup, provides a practical methodology for controlled sound exposure experiments on small aquatic organisms, enabling a separate assessment of their acoustic pressure- and particle motion-elicited responses across a range of realistic scenarios. The chosen facility design permits the reproduction of realistic sound exposures at different kinetic-to-potential energy ratios, with characteristics similar to underwater-radiated noise from human activities such as shipping or offshore installations (<1 kHz). It provides a cost-efficient multimodal approach to investigate potential physiological, pathological, and ultrastructural effects on small aquatic organisms at any stage of maturity. This study details the vibroacoustic characterization of the AquaVib system, identifies key challenges, and outlines planned improvements. The ultimate goal of the presented approach is to contribute to the scientific community and competent authorities in covering the main gaps in current knowledge on the sensitivity of aquatic organisms to the particle motion component and to identify and quantify potential acute and long-term detrimental effects arising from human activities. Full article

Pseudomonas aeruginosa is an opportunistic pathogen of public health concern. This study aimed to investigate the prevalence of P. aeruginosa, some virulence factors, and antimicrobial resistance patterns and highlight the potential pathways of horizontal bla_SHV-resistant gene transfer from diverse sources. A total of 220 samples were collected from fish (n = 90), water (n = 30), poultry (n = 50), and humans (n = 50). All samples were isolated, confirmed by the Vitek 2 system, and tested against antimicrobial agents. Some virulence and resistance genes were examined by PCR and sequenced for the bla_SHV-resistant gene from four selected isolates from each source. SPSS v26, with chi-squared tests and Pearson correlations (p < 0.05), was implemented for statistical investigation. P. aeruginosa was isolated at 33.3%, 20%, 14%, and 24% from fish, water, poultry, and humans, respectively. Using the diffusion disk method, extensively drug-resistant (XDR) and multidrug-resistant (MDR) strains were detected. All strains harbored the oprL and toxA genes, while the lasB gene was present in 40% of fish samples but not present in human samples. All strains lacked the exoS gene. The tetA, sul1, bla_SHV, and bla_TEM resistance genes were detected at different percentages. The bla_SHV genes from fish and water isolates were closely related to each other and showed similarity to those of the human isolates. The poultry isolates formed a separate phylogenetic lineage. The emergence of XDR and MDR P. aeruginosa highlights a possible public health threat. Based on the gene similarity between fish and water isolates, our results suggest that these isolates have a common origin. The similarity between the human isolates and environmental isolates (fish and water) raises concerns about possible transmission to humans. Full article

Different treatments of fish scales from carps (Cyprinus carpio) (FS)—mechanical milling, modified with cerium dioxide (CeO₂) nanoparticles and controlled carbonization of FS and modification with CeO₂—were applied to obtain FS, FS-CeO₂ and CFS-CeO₂ bio-adsorbents. The synthesized adsorbents were used for As(V) and Cr(VI) oxyanion separation from water. Porosity and the amount of CeO₂ nanoparticles deposition were controlled using different experimental conditions. Response surface methodology (RSM) was used to select optimal parameters for adsorbent synthesis to obtain the highest adsorption capacity. The structural and surface characteristics of the synthesized adsorbents were examined using FTIR, XRD and SEM techniques. The efficiency of pollutant removal was analyzed in terms of varying experimental conditions: the mass of adsorbent, pH, temperature and contact time. RSM was also used to optimize adsorption and desorption processes. The adsorption data, obtained at 25, 35 and 45 °C, were processed using Langmuir, Freundlich, Temkin and Dubinin–Radushkevich isotherm and Van’t Hoff thermodynamic models. The FS-CeO₂ bio-adsorbent showed good adsorption capacities of 92.61 and 65.50 mg g⁻¹ for As(V) and Cr(VI) ion removal, respectively, obtained by using the Langmuir model. Thermodynamic parameters proved that adsorption was a viable, spontaneous and endothermic process. The results from kinetic modeling indicated that both adsorbate and surface functional group concentration determine overall kinetic law with the highest participation of intra-particle diffusion resistance to pollutant transport. Exceptional adsorption and desorption performances of FS-CeO₂ in conjunction with the bio-based origin of synthesized adsorbents offer valuable alternatives for the remediation of polluted water. Full article