Search Results (1,164)

Global agricultural production is challenging due to climate change and a number of phyto-pathogenic organisms and pests that pose a significant threat to both crop growth and productivity. The growing resistance of pests and diseases to synthetic chemicals makes crop production even more difficult, which highlights the urgent need for alternative solutions. From this perspective, marine microorganisms have emerged as a significant natural product source for their distinctive bioactive compounds and environmentally sustainable potential pesticidal activity. The unique microbial resources and structurally diverse metabolites of the marine ecosystem have been proven to have strong antagonistic effects against a broad spectrum of agricultural diseases and pests, making them a valuable candidate for the development of novel pesticides. This review highlights 126 marine natural products from marine microorganisms with diverse metabolic pathways and bioactivities against agricultural pests, pathogens, and weeds. The findings underscore the potential of marine-derived compounds in addressing the growing challenges of crop protection and offering an appealing strategy for future agrochemical research and development. Full article

Plants inhabiting arid regions often harbor microbial communities that contribute to their resilience under extreme conditions. Yet, the genomic diversity and functional potential of bacterial endophytes associated with desert-adapted plants, particularly in Africa, remain largely unexplored. In this study, we investigated Microbacterium endophytes from the xerophytic cucurbit Citrullus colocynthis L. (Cucurbitaceae), collected in a semi-arid environment in central Morocco. Using culture-based isolation, phenotypic characterization, and whole-genome sequencing, we analyzed three representative isolates from leaf and root tissues. Genome-based taxonomy combined with polyphasic analyses identified two novel species, Microbacterium xerophyticum sp. nov. and Microbacterium umsixpiens sp. nov., with genome sizes of approximately 4.0 Mb and 3.9 Mb, respectively. Functional annotation revealed traits consistent with endophytism in water-limited ecosystems, including oxidative and osmotic stress responses, metal homeostasis, and high-affinity phosphate uptake. Differences in siderophore acquisition and nitrogen metabolism suggest niche partitioning between the two species. These findings document two novel bacterial species from a medicinal plant native to arid ecosystems, broaden the known diversity of plant-associated Microbacterium, and provide region-specific genomic references with adaptive traits relevant to host resilience under arid conditions. Full article

Continuous cropping can often deteriorate soil quality and reduce crop yield. Soil properties and microbial communities usually play a vital role in maintaining rhizosphere micro-ecosystem sustainability, which is yet to be addressed in continuous peony monoculture systems. Herein, variations in soil physiochemical properties were extensively investigated following 1, 4, and 10 years of continuous tree peony cropping, as well as microbial community diversity, composition, and predicted functions. The soil pH and contents of available Mg, Mn, Zn, and B significantly declined after 10 years of continuous monoculture, while the contents of soil organic carbon, nitrate, and available P, K, Fe, and Cu notably increased by more than 100%, implying an imbalance of soil nutrients resulting from long-term continuous cropping. High-throughput sequencing results indicated that the microbial community structure and composition were remarkably altered after either 4 or 10 years of continuous cropping, interfering with diverse microbial metabolic pathways and phenotype functions. In addition, the relative abundances of some beneficial bacteria dramatically increased, especially for Acidobacteriota and Bacillus members. Microbial selections or adaptations in response to soil nutrient changes were expected to remediate negative impacts of continuous cropping on soil quality. Findings in this study provide insights into the establishment of proper management strategies for sustaining soil quality to resist potential obstacles after long-term continuous peony cropping. Full article

 Modern biomedicine frequently contextualizes disease around isolated molecular or organ-specific mechanisms, but numerous chronic diseases, including Alzheimer’s disease, multiple sclerosis, depression, diabetes, and sepsis, share common trajectories of systemic destabilization. An increasing body of evidence indicates that health is not a property of single organs but the emergent property of interdependent feedback networks linking the microbiome, endocannabinoidome, neuroimmune system, and metabolic regulators. We propose the Endocannabinoid–Microbiota–Neuroimmune Super-System (EMN-S) as an evolutionarily conserved conceptual model that describes how these fields of influence reciprocally interact through feedback control. The microbial communities constituting the EMN-S encode environmental and dietary inputs, endocannabinoid signaling serves as an integrative regulator that synchronizes neural and immune activity, and neuroimmune circuits effectuate adaptive behaviors that alter microbiotal and lipid ecosystems. This review formalizes the EMN-S, contending that it is a unitary and cohesive model of physiological resilience, as well as offering a framework for precision feedback therapeutics. We describe how three mechanisms—encoder drift, integrator detuning, and executor overutilization—convert stabilizing negative feedback into runaway feedback cascades that underlie chronic, recurrent, and multisystemic disease. We then specify the EMN-S signature—integrated microbiome, lipidomic, and immune readouts—as an early indicator of resilience collapse and prospective preclinical state. Finally, we recapitulate the potential of AI-driven digital twins to illuminate feedback collapse, predict tipping points, and direct closed-loop intervention and treatments to restore dynamic equilibrium. By anchoring complexity in concrete and measurable feedback principles, the EMN-S shifts focus to investigate pathophysiology as opposed to reductionist lesion models of systemic derangements and embraces a systemic, empirically testable theory of stability.  Full article

Climate-change-induced thermal stress poses a significant threat to cold-adapted aquatic species, particularly fish endemic to high-altitude ecosystems such as Gymnocypris eckloni, which is native to the Qinghai-Tibetan Plateau. To elucidate the molecular and metabolic mechanisms underlying their response to elevated temperatures, we integrated RNA-seq, miRNA-seq, and LC-MS-based metabolomic analyses of liver tissue from fish exposed to chronic thermal stress (HT) versus control (CT) conditions. Although no significant differences were observed in growth parameters, histopathological examination revealed structural damage under heat stress. Transcriptomic analysis identified widespread dysregulation of genes involved in energy metabolism, with significant downregulation of pathways related to amino acid, fatty acid, glucose, and oxidative phosphorylation. In contrast, upregulated DEGs were enriched in N-glycan biosynthesis, protein processing in the endoplasmic reticulum, and phagosome. Concomitant miRNA profiling revealed differentially expressed miRNAs, including miR-196a-5p, miR-132-3p, and miR-181b-5p, which were predicted to regulate key metabolic genes such as ugt1a1, pepck, and calr. Metabolomic analysis further demonstrated significant alterations in metabolic profiles, with glutathione metabolism, tryptophan metabolism, steroid hormone biosynthesis, and pyruvate metabolism emerging as central pathways in the heat stress response. Integrated multi-omics analysis confirmed coordinated regulation of these pathways, highlighting the critical role of glutathione and tryptophan, as well as disruptions in purine and energy metabolism. The DEMiR-DEG-DEM networks involving miR-196a-5p-pepck-PEP, miR-133a-3p-gne-UDP-GlcNAc, and miR-132-3p-ugt1a1-Bilirubin may play an important role in thermal stress. This study provided a new perspective on the molecular, regulatory, and metabolic adaptations of Gymnocypris eckloni to thermal stress, identifying potential biomarkers and regulatory networks that may inform conservation strategies for cold-water fish under global warming. Full article

Glyphosate, a widely used non-selective herbicide, has been a subject of intense scientific debate due to its environmental persistence and potential health risks. This review examines glyphosate’s mechanisms of action, its effects on crop production, and its broader environmental impact, including soil degradation, water contamination, and biodiversity loss. Furthermore, it examines the expanding body of research linking glyphosate exposure to various human health concerns, including metabolic, neurological, reproductive, and oncological disorders. The review also assesses glyphosate’s role in hindering the achievement of the Sustainable Development Goals (SDGs), particularly those related to food security, health, access to clean water, and the protection of marine ecosystems. Finally, potential alternatives to glyphosate-based weed control, including organic and non-chemical methods, are discussed to promote sustainable agricultural practices that balance productivity with ecological and public health considerations. The evidence reviewed highlights glyphosate’s pervasive presence across ecosystems and its potential to disrupt both environmental and human health. The findings underscore the urgent need to regulate glyphosate use, prioritize soil and water protection, and accelerate the transition toward sustainable, low-toxicity weed management strategies that align with global sustainability objectives. Full article

The human gut microbiome is a complex ecosystem of microorganisms fundamental to human health, influencing metabolism, immunity, and neurological function. Dysbiosis, or an imbalance in this microbial community, is increasingly linked to a range of chronic diseases, from inflammatory bowel disease to metabolic syndrome. This article explores the therapeutic potential of several common botanicals in modulating the gut microbiota and promoting intestinal health. We delve into the phytochemical composition and pharmacological properties of nine medicinal plants: globe artichoke, aloe vera, German chamomile, pot marigold, Ceylon cinnamon, dandelion, fennel, garlic, ginger, and green tea. We focus on their anti-inflammatory, antioxidant, antimicrobial, and prebiotic effects. The article also discusses the scientific evidence supporting their use, acknowledges the limitations of current research, and highlights considerations for safe and effective application. We conclude by summarising the significant role of these herbal remedies in modern complementary medicine and proposing future research directions to further elucidate their mechanisms of action and optimise their use for gut health. Full article

Aquatic ecosystems are increasingly threatened by multiple anthropogenic stressors, notably climate change and pollution by pharmaceuticals. Global warming is predicted to raise water temperatures by 2–5 °C by the end of the century. As ectotherms, fish are particularly vulnerable due to limited thermal tolerance and temperature-dependent physiology. Pharmaceuticals are introduced into aquatic systems at concentrations ranging from ng·L⁻¹ to µg·L⁻¹, including widely prescribed classes such as antibiotics, hormones, analgesics, antifungals, and neuropsychiatric drugs. This narrative review synthesizes experimental evidence on the interactive effects of warming and pharmaceutical exposure in fish. Thirty-nine peer-reviewed studies published since 2005 were analyzed. The findings indicate that higher temperatures often exacerbate pharmaceutical-induced toxicity, altering oxidative stress, metabolism, reproduction, and behavior. Antibiotic-focused studies showed temperature-dependent acceleration of absorption, distribution, metabolism, and excretion, with shorter half-lives and reduced tissue persistence at higher temperatures. Estrogenic hormones and antifungals have been shown to interact with thermal regimes, disrupting reproductive physiology and skewing sex ratios, particularly in species exhibiting temperature-dependent sex determination. Neuropsychiatric drugs exhibited altered uptake and metabolism under warming conditions, resulting in increased brain bioaccumulation and behavioral alterations affecting ecological fitness. Analgesics and anti-inflammatories remain understudied despite their widespread use, with evidence suggesting synergistic effects on oxidative stress at elevated temperatures. Significant research gaps persist regarding chronic exposures, early developmental stages, ecologically relevant temperature scenarios, and underrepresented or absent drug classes, such as hypolipidemic drugs. Ultimately, broader and integrated approaches are needed to better understand and predict the ecological risks of pharmaceutical pollution in a warming world. Full article

Triclocarban (TCC), a synthetic antimicrobial compound prevalent in personal care products, has emerged as a typical contaminant in aquatic ecosystems. Intestinal microbiota maintains the host’s health homeostasis by regulating nutrient metabolism and immunity and is regarded as a sensitive biomarker for the risk assessment of pollutants. Currently, there is still a lack of toxicity assessment of TCC on the intestinal microbiota homeostasis of shrimp. Therefore, this study employed 16S rDNA sequencing to explore intestinal microbiota perturbations in Penaeus monodon following subchronic exposure (14 days) to graded TCC concentrations (1 and 10 μg/L). The results showed that TCC exposure altered intestinal microbiota diversity, marked by increases in the ACE, Chao1, and Shannon indices and a decrease in the Simpson index; however, none of these changes reached statistical significance (p > 0.05). Furthermore, the community composition was also altered, characterized by a significant increase in Bacteroidetes and a significant decrease in Tenericutes (p < 0.05), alongside non-significant increases in Proteobacteria and decreases in Firmicutes (p > 0.05). The abundances of some putative beneficial bacterial genera (Alloprevotella, Bacteroidales S24-7 group_norank, Cetobacterium, Enterococcus and Lactobacillus) and harmful bacteria (Photobacterium and Aeromonas) were decreased (p > 0.05); the abundance of Vibrio was decreased in the T1 group but increased in the T10 group (p > 0.05). Additionally, the predicted functions of the intestinal microbiota, such as glycan biosynthesis and degradation, steroid and isoflavone biosynthesis, and nucleotide metabolism, were enhanced. These results indicated that TCC exposure had a negative effect on the homeostasis of the intestinal microbiota of P. monodon. Full article

Xanthohumol (XN), a polyphenol from hops (Humulus lupulus), exhibits antioxidant, anti-inflammatory, antihyperlipidemic, and chemo-preventive activity. Preclinical evidence suggests gut microbiota are critical to mediating some of these bioactivities. Nevertheless, its precise impact on human gut microbiota, particularly at supplemental doses, remains poorly characterized. We evaluated 200 mg/day XN for 3 weeks on human gut microbiota in a eubiotic and dysbiotic model using the Simulator of the Human Intestinal Microbial Ecosystem (SHIME^®). Functional assessments of microbiota included quantification of XN metabolites, short-chain fatty acids (SCFAs), and untargeted metabolomics of the digestive metabolome. Bacterial composition was assessed by 16S rRNA gene sequencing. XN reduced alpha-diversity and short-chain fatty acid production in both models, as well as altered taxa abundance variably between models. XN disrupted bile acid metabolism through inhibition of microbial bile salt hydrolase (BSH). The modulation of bile acid metabolism has important implications for host-level bioactivity of XN. Full article

The oral cavity harbors one of the most diverse microbial ecosystems in the human body, second only to the gut. Periodontitis, a chronic inflammatory disease arising from oral microbiota dysbiosis, has been increasingly associated with systemic disorders such as diabetes mellitus, atherosclerosis, rheumatoid arthritis, inflammatory bowel disease, and neurodegenerative conditions. Although hematogenous dissemination of oral pathogens and inflammatory mediators has long been proposed as a mechanistic link, emerging evidence identifies the oral–gut axis as a novel bidirectional pathway. Swallowed oral pathobionts, such as Porphyromonas gingivalis and Fusobacterium nucleatum, can colonize the gut, disrupt the intestinal barrier, and induce dysbiosis, immune imbalance, and metabolic alterations that aggravate systemic inflammation and disease progression. In contrast, gut dysbiosis, especially in obesity or high-fat-diet models, can exacerbate periodontal tissue destruction through hyperuricemia, altered bone metabolism, and Th17/Treg immune imbalance. Experimental and clinical studies further support this reciprocal relationship, implicating microbial, metabolic, and immune crosstalk in both oral and systemic pathology. Understanding this oral–gut–systemic axis offers a paradigm shift in diagnostics and therapeutics, focusing on precision interventions such as microbiome modulation, probiotics, and integrated oral care to mitigate systemic inflammatory burden and improve overall health outcomes. Full article

Microplastic (MP) contamination represents a global threat to aquatic ecosystems, yet its biological effects remain poorly understood. This study investigates the short-term impacts of polyethylene (PE) microparticles on two amphipod species: the semi-terrestrial Cryptorchestia garbinii and the aquatic Echinogammarus veneris. Amphipods are exposed to MPs both in water and through dietary intake. After 24 h, C. garbinii ingested an average of 9.6 ± 1.2 particles per individual, while E. veneris ingested 12.5 ± 2.8 particles, confirming an active uptake of microplastics. The mean particle size decreased from ≌50 µm in the food tablets to 18–25 µm in the digestive tract, suggesting fragmentation during digestion and highlighting the ecological role of amphipods in generating smaller, potentially more bioavailable particles. Both species exhibited a marked increase in DNA damage, together with variations in energy-reserve allocation (glucose, glycogen, and lipids) consistent with acute metabolic stress. To our knowledge, this represents the first evidence of genotoxicity ever reported in C. garbinii, expanding current understanding of the biological responses of amphipods to plastic pollution. These findings highlight the vulnerability of detritivore species to MPs exposure and, given their role in nutrient cycling, emphasize the need for further research on the ecological implications of MPs contamination. Full article

Environmental pollution, driven by industrialization, urbanization, and agricultural practices, has intensified global ecological degradation. Among the most concerning pollutants is PFOS, a synthetic compound known for its chemical stability, environmental persistence, and bioaccumulative potential. Widely utilised in industrial and consumer products, PFOS infiltrates ecosystems and food chains, posing substantial risks to human and animal health. Upon exposure, PFOS disrupts lipid metabolism, damages cellular membranes, and alters signaling pathways through partial metabolism by cytochrome P450 enzymes. Accumulating evidence links PFOS to oxidative stress, mitochondrial dysfunction, endocrine disruption, neurotoxicity, and immunotoxicity. Critically, PFOS contributes to the development and progression of prostate, breast, and ovarian cancers via mechanisms such as hormonal interference, chronic inflammation, and epigenetic modifications. Epidemiological studies further associate elevated PFOS serum levels with increased cancer risk, particularly in occupationally and environmentally exposed populations. This review brings together the latest knowledge on PFOS emissions, mechanistic toxicity, and cancer-causing potential, highlighting the urgent need for focused research and improved regulatory measures to safeguard public health. Full article

Deltamethrin is widely employed for crop pest control, aquaculture pond clearance, and fish parasite treatment. Due to its photostability, thermal resistance, and lipophilicity, deltamethrin has a high potential for environmental persistence and bioaccumulation in aquatic organisms. This poses significant risks to aquatic ecosystems, the safety of aquatic products, and human health. Although our previous study isolated Paracoccus sp. P-2 from crab culture pond sediment and demonstrated its high efficiency in degrading deltamethrin, the underlying mechanisms and enzyme characteristics remain unelucidated. In this study, genomic analysis revealed that the Paracoccus sp. P-2 genome was assembled into 3 contigs with a total length of 4,451,812 bp, an average G + C content of 67.73%, and a total of 4462 predicted genes. In addition, a quantitative analysis of the Paracoccus sp. P-2 proteome identified 3052 proteins, with 2705 exhibiting significant differential abundance (FC ≥ 1.5 or FC ≤ 0.6667, and p-value ≤ 0.05) following deltamethrin exposure. Among them, many upregulated differentially expressed proteins were enriched in carbohydrate and energy metabolism pathways, indicating that Paracoccus sp. P-2 enhances its basal metabolic activity in response to deltamethrin-induced stress. More importantly, enzymes belonging to hydrolases, decarboxylases, and those involved in multiple xenobiotic metabolic pathways were upregulated and are likely to participate in the degradation of deltamethrin. This study elucidates the impact of deltamethrin on bacterial metabolism and its degradation mechanism by Paracoccus sp. P-2, providing crucial insights and microbial resources for researching pyrethroid biodegradation. Full article

Intercropping triggers coordinated changes in gene expression and metabolite accumulation across sugarcane roots, stems, and leaves, leading to higher crop yields—an effect that has drawn growing attention. Yet, how this transcriptional and metabolic interplay precisely enhances productivity remains poorly understood, limiting insight into intercropping’s yield-promoting mechanisms. This research explored the relationships between sugarcane, its metabolites, and transcriptomes through field trials integrated with multi-omics analysis. Data from the field showed clear differences in gene expression and metabolite patterns between monoculture and intercropped sugarcane. Plants under intercropping displayed stronger differential gene expression, greater metabolite diversity, and shifts in physiological traits. Metabolite variation was closely linked to gene regulation and network complexity, which in turn affected key agricultural characteristics including plant height, stem thickness, and sugar content. Follow-up experiments confirmed that applying zinc—a element boosted by intercropping—improved growth in monoculture sugarcane and modified its hormonal composition. These results highlight the important role of coordinated transcriptome-metabolite activity in intercropping systems. The study provides valuable perspectives for making intensive farming more economical and sustainable, supporting efforts to raise crop output and improve ecosystem functions. Full article