Search Results (18)

The RCC1 gene is active in ensuring many cellular functions related to cell division in Drosophila melanogaster and Homo sapiens. A detailed comparison of the structure and functions of the RCC1 gene in Drosophila melanogaster and Homo sapiens was carried out using different analytical techniques (bioinformatics, immunofluorescence and confocal microscopy, FISH, and molecular genetic methods). The Drosophila RCC1 gene belongs to the family of housekeeping genes, since it resides in the interbands and gray bands of polytene chromosomes within aquamarine/lazurite chromatin in D. melanogaster. Furthermore, the databases demonstrate that RCC1 in D. melanogaster is expressed in all the tissues at all the developmental stages. According to The Human Protein Atlas, RCC1 in humans also exhibits low tissue specificity for 29 tissues. Immunostaining of polytene chromosomes with RCC1 antibodies revealed approximately 260 sites of RCC1 protein localization exclusively in black bands (sites of developmental genes) and in heterochromatin. The size of the coding gene portions is almost identical for D. melanogaster and H. sapiens, being ~2 kb. The group of Drosophila proteins related to condensed chromatin, RCC1 being a member of this group, has homologs forming similar interaction networks in humans. The conserved nature of the RCC1 gene has been confirmed by cell cycle studies in both species. It was found that expression of the RCC1 gene is upregulated in glioblastoma; the RCC1 protein predominantly resides on centrioles during metaphase. Full article

Aquamarine, a popular variety of blue beryl, faces challenges in market valuation due to its reliance on subjective color assessment. This study investigates the coloration mechanism and establish a quantitative framework for assessing its color based on spectral and chromaticity analysis. We utilized electron probe microanalysis, ultraviolet-visible-near-infrared spectroscopy, laser Raman spectroscopy, and fiber optic spectroscopy to examine Brazilian aquamarine samples with varying blue intensities. The results indicate that the samples have high alkali metal (Na, K) content and low V/Cr content, consistent with the characteristics of high-alkali beryl. Ultraviolet spectroscopy reveals that the Fe³⁺-Fe²⁺ interaction (absorption at 620 nm) is the primary cause of blue coloration, while in deep blue samples, absorption at 956 nm decreases. Raman shifts (317 cm⁻¹, 392 cm⁻¹ Al-O bonds) correlate with TFeO content and chromaticity b value higher TFeO content corresponds to smaller Al–O peak shifts, and larger shifts are associated with higher b values (yellow hue). Specifically, increasing TFeO content leads to a shift of the Al-O Raman peak towards higher wavenumbers, and the magnitude of this shift is negatively correlated with the TFeO level. Based on hue angle (H) and saturation (S), we propose a classification method: “Light Blue” (H: 140–170, S ≤ 15), “Sky Blue” (H: 170–200, 15 < S ≤ 25), “Ocean Blue” (H: 200–230, 25 < S ≤ 35), and “Deep Blue” (H > 230, S > 35). This system provides a scientific basis for the quality assessment and market valuation of aquamarine. Full article

Vanadium-bearing beryl is a vanadium-bearing variety of green beryl (distinct from emerald) that exhibits an “electro-optical” green (blue-green) color, which has led to its commercial popularity. However, the underlying coloration mechanism remains unclear. The present study adopted standard gemological tests and non-destructive spectroscopic tests, such as X-ray fluorescence, UV-visible-near infrared (UV-Vis-NIR), infrared and Raman spectroscopy, to analyze the vanadium-bearing beryl from Nigeria. The results of these tests indicated the presence of Fe as the predominant chromogenic element of vanadium-bearing beryl, followed by V, at a level exceeding that of Cr. Furthermore, the samples displayed lower levels of alkali and magnesium when compared to other beryls, accompanied by lower refractive indices and specific gravities. Spectroscopic analysis indicates that the structural channels are dominated by type I H₂O, with CO₂, HDO, and D₂O molecules also present. The inclusions observed in vanadium-bearing beryl bear a resemblance to those found in typical aquamarines, which are raindrop-shaped inclusions, and to those found in emeralds of various origins, which are irregular, jagged, gas–liquid two-phase/three-phase inclusions. The broad UV-Vis-NIR absorption bands at 427 and 610 nm are characteristic of V³⁺ (and a minor amount of Cr³⁺). Charge transfer between Fe²⁺ and Fe³⁺ may also contribute to the 610 nm band, which is superimposed on the absorption bands of V³⁺ and Cr³⁺. These factors primarily contribute to the blue-green coloration of beryl. The absorption induced by V³⁺ in the visible violet-blue region exhibits stronger intensity and a greater tendency towards the blue region compared to Cr³⁺. Consequently, the resultant vanadium-bearing beryl acquires the yellow-green hue (induced by V) overlaid with the light blue (induced by charge transfer between Fe²⁺-Fe³⁺ pairs), resulting in the so-called “electro-optical” green (blue-green) beryl. Full article

Globally, work is being undertaken to preserve biodiversity and prevent further species extinctions. Yet, without adequate data about the presence of species within ecosystems, hidden extinctions can occur without our knowledge. Given that poleward range retractions are projected for bull kelp (Durvillaea amatheiae) in southeastern Australia, there is the potential for hidden extinctions to occur in associated macrofaunal species. However, this risk cannot be assessed due to the limited data on the invertebrate macrofauna associated with D. amatheiae. We documented macrofauna within D. amatheiae holdfasts, with the objective of establishing a first analysis of the holdfast fauna for this kelp and identifying, where possible, any host-specific taxa. Holdfasts were collected at six locations, spanning most of the range of D. amatheiae on the southeastern Australian mainland. Macrofauna were removed from holdfasts and identified to the lowest possible taxonomic level. Modelling was applied to determine factors correlated with patterns of assemblages among locations. Holdfast assemblages were found to vary significantly among locations and exhibited a latitudinal gradient in assemblage structure. The northernmost location (Aragunnu), which has the highest risk of D. amatheiae range retractions, was found to have distinct species assemblages and generally higher diversity and abundance than locations further south. However, no host-specific taxa were identified in samples, indicating that there is a low risk of multiple hidden species extinctions occurring in holdfast macrofauna, due to future range retractions of D. amatheiae. Rather, most of the macrofauna taxa in D. amatheiae holdfasts were found to also occur in association with the sympatric golden kelp Ecklonia radiata, which is not expected to undergo range retractions at the latitudes where losses of D. amatheiae are projected. Overall, there is an urgent need to develop strategies to combat projected future range retractions of D. amatheiae to reduce impacts on the species that rely on D. amatheiae for habitat. Full article

“Trapiche-like” texture is distinct from “trapiche” texture as typically observed in emeralds, amethysts, and aquamarines. It is also occasionally encountered in sapphires from Changle, eastern North China Craton. The advent of the trapiche-like texture has enhanced the ornamental value of sapphire, although its origin is still unclear. In this study, techniques, such as Fourier transform infrared (FTIR) spectroscopy, ultraviolet–visible (UV-Vis) spectroscopy, Raman spectroscopy, electron probe microanalysis (EPMA), and laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS), have been applied to test the spectroscopic data of the cores, arms, and blue sectors of trapiche-like sapphires from Changle and explore the mineralogical characteristics of different domains. The main component of the core, arms, and blue sectors of trapiche-like sapphire is corundum (Al₂O₃), with trace elements including Fe, Ti, Mg, Cr, V, Ga, etc. From arms to cores to sectors, trace elements show a trend of increasing and then decreasing. Nb and Ta elements are more enriched in the arms than in the sectors, indicating the existence of rutile. With changes in physicochemical conditions during magma evolution, rutile melted, and related voids were filled with glassy inclusions, which formed the arms of trapiche-like sapphires. Field observations of primary deposits, as well as petrological and geochemical analyses, reveal that the trapiche-like sapphire of Changle belongs to magmatic sapphire. Full article

New aquamarine deposits have been found around the world in recent years, and how to compare and distinguish aquamarines of different origin has become a significant problem. Aquamarines from Koktokay, Minas Gerais, and Namaqualand were collected for standard gemology tests, spectroscopy, and chemical analysis in this paper. The spectroscopy experiment included infrared spectroscopy and Raman spectroscopy. Chemical composition analysis comprises electron microprobe and laser ablation–inductively coupled plasma–mass spectrometry (LA-ICP-MS). The results show that infrared absorption peaks related to [Fe₂(OH)₄] and NaH are found in Koktokay and Minas Gerais aquamarines, respectively. Compared with other two origins, Namaqualand aquamarine have strongest type II water Raman peak related to alkali metal content. Compared with aquamarines from other sources, aquamarines from Xinjiang and Minas Gerais are characterized by relatively high aluminum and low alkali contents in chemical composition, while Namaqualand aquamarine have a high scandium content. Full article

Supramolecular 3D Zn(II) coordination polymer {[Zn(bim)(bdc)]⋅0.8DMF⋅0.4EtOH⋅0.1H₂O }_n (Zn-MOF), constructed from Zn²⁺ ions, bis(imidazol-1-yl)methane (bim) and terephthalate (bdc²⁻) anions, was synthesized and structurally characterized. Zn-MOF crystallizes in the tetragonal crystal system, space group P4₂/n. Each Zn(II) ion coordinates two neutral bim molecules in a bridging bidentate coordination mode via nitrogen atoms at position 3 of the imidazole rings and two bdc²⁻ anions, with monodentate coordination of the carboxylate group for one of them and bidentate coordination for another. Zn(II) cations are in a distorted square pyramidal ZnN₂O₃ coordination environment. Metal cations are alternately linked by the bim and bdc²⁻ ligands, forming a two-dimensional layered structure along the crystallographic plane ab. As a result of layer interpenetration, a supramolecular 3D network is formed. Zn-MOF demonstrated blue (aquamarine) emission with a maximum at 430 nm upon excitation at 325 nm. The luminescence lifetime of 6 ns is characteristic for ligand-centered fluorescence. The luminescent sensing properties of Zn-MOF in ethanol suspension toward inorganic cations and anions were evaluated and an emission quenching response was observed for Fe³⁺ and chromate/dichromate ions. Photoinduced electron transfer from Zn-MOF to Fe³⁺ was elucidated as a possible quenching mechanism on the basis of DFT calculations. Full article

The No. 5 pegmatite vein is the most evolved and well mineralized vein in the Renli deposit, with beryl being the most important beryllium mineral. The vein represents one of the most important gem-quality aquamarine mines at Renli. In this study, beryl crystals from the No. 5 pegmatite vein were examined by EMPA (electron microprobe analysis), ICP-MS (inductively coupled plasma-mass spectrometry), XRD (diffraction of X-rays), FTIR (fourier transform infrared spectrometer), and Raman analyses. Field and petrographic observations showed that most beryl crystals are euhedral to subhedral with light to medium blue color. EMPA analyses indicated that the main chemical compositions of beryl are close to the ideal values, with relatively low Fe (0.222–0.690 wt%) and alkali metal (0.280–0.820 wt%) contents. Geochemical and spectroscopic analyses indicated that cations replacement in beryl is relatively simple. The substituting cations of beryl in the octahedral Al site include mainly: Mg²⁺, Fe²⁺, Fe³⁺, Mn²⁺, Cr³⁺, Ti⁴⁺, and the excess Si. The tetrahedral Be site is mainly replaced by Li. Alkali metals in channel (esp. Na) serve as a charge compensator. According to the Fe-Mg-alkali and Li-Cs contents, the beryls from No. 5 pegmatite belong to the low Li-Cs and low Fe-Mg-medium alkali beryl groups. Field and geochemical data indicated that the No. 5 pegmatite vein formed by the multistage Mufushan granitic pluton emplacement and the magma source was less evolved. Full article

The Yamrang Pegmatite in the Ikhabu Pegmatite Field, Eastern Nepal is Nepal’s primary source of aquamarine. This paper reports detailed mineralogy and whole rock granite and pegmatite geochemistry, and major and trace element data for alkali feldspar and muscovite in order to classify the aquamarine-bearing Yamrang Pegmatite, elucidate beryl-saturation processes and evaluate potential geochemical exploration tools for beryl-pegmatites. Five internal mineralogical/textural zones were identified in the Yamrang Pegmatite; zone 1 (saccharoidal albite); zone 2 (blocky perthitic microcline); zone 3 (muscovite–microcline–quartz); zone 4 (beryl-quartz), and zone 5 (miarolitic cavities). Zones 1–4 represent the magmatic stage, while zone 5 formed during the hydrothermal stage of pegmatite genesis. Spectacular aquamarines are recovered from miarolitic zone 5, while beryl saturation is found in zones 3, 4, and 5. Based on beryllium (Be) content, Be partition among co-existing minerals at the magmatic stage is beryl > muscovite > tourmaline > alkali feldspar > quartz. In contrast, the sequence at the hydrothermal stage is beryl > muscovite > albite > tourmaline > quartz. The Be content in rock-forming minerals decreases from pegmatite margin to core, and tourmaline could have played a significant role in Be enrichment processes in the marginal pegmatite zone. High temperature, a low degree of fractionation, and the dominance of Be-compatible mineral phases such as muscovite, calcium-rich alkali feldspar and tourmaline resulted in beryl undersaturation in marginal zones. However, low temperature, high fractional crystallization, and low abundance of Be-compatible mineral phases resulted in beryl saturation in inner zones. The strongly peraluminous nature, low total REE content (<500 ppm), mineral assemblage of beryl, tourmaline, spessartine, columbite-tantalite, depletion of Ba, Nb, and enrichment of Pb, Rb, Cs in the primitive mantle normalized multi-element plots suggest that the beryl-bearing Yamrang Pegmatite corresponds to the LCT pegmatite family. Alkali feldspar with K/Rb values of 30–150, Rb ~3000 ppm, Cs >100 ppm, and muscovite, with K/Rb ranging 18–50, Rb ~6000 ppm, Cs > 500 ppm, and Ta > 65 ppm in inner zones (3–5), indicate that the Yamrang Pegmatite is an intermediate-fractionated, beryl-type rare-element (REL) pegmatite. It is probable that whole rock Be content of >10 ppm could be considered an exploration guide to beryl mineralization in the region. Full article

The Sea Slug Census program in Australia engages with citizen scientists to record the diversity and distribution of sea slugs across multiple locations. The program has consistently recorded shifts in distribution patterns but a recent, nine-day census in subtropical eastern Australia recorded unprecedented range extensions of tropical species. Seven species (six chromodorids and one polycerid) were found further south of their previously known distribution with Hypselodoris bertschi being recorded for the first time in Australia. These observations suggested the recent transport of larvae via the East Australian Current with recruitment to coastal sites possibly promoted by a protracted period of strong onshore winds associated with the 2021/22 La Niña in the western Pacific. With the increasing frequency of poleward range extensions of marine taxa, citizen science programs such as the Sea Slug Census provide the opportunity to substantially increase monitoring efforts. Linking with iNaturalist strengthens the value of the observations through online peer review to confirm species identities as well as the incorporation of substantiated (Research Grade) records into international biodiversity databases such as GBIF. Full article

Gemstones are minerals of gem qualities used for adornment and decoration with the attributes of beauty, durability and rarity. Traditionally, although China has been regarded as the most important source for nephrite, over the past decades, a large variety of gemstone resources have been newly discovered in China owing to continuous exploration works. The vast land with various geological and geochemical backgrounds is rich in gemstone resources with potential for new deposits discoveries. In pegmatites, gemstones are related to granitic magma events and mainly occur in pegmatitic cavities, such as tourmaline, aquamarine, spodumene, spessartine, moonstone, quartz, apatite, and topaz. The eruption of Tertiary basaltic magma provides gem-quality sapphire, spinel, olivine, garnet, and zircon. The supergene oxidation zones of some copper and iron deposits in Hubei and Anhui province host gem-quality turquoise and malachite. Moreover, the formation of the nephrite deposit in China is mostly related to the carbonatite and serpentinite rocks involved in the metamorphic-metasomatic processes. This paper comprehensively introduces the distribution of gemstones deposits, as well as the gemological and mineralogical characteristics of gemstones in China. Our present investigation provides insights into the gemstone potential of China for further exploitation. Full article

Recently, aquamarine was discovered in the Cuonadong Be-W-Sn Polymetallic Deposit, Longzi County, Tibet. Longzi aquamarine is being extracted and is expected to be available over the next decade. This study provides a full set of data through standard gemmological properties, including scenes, color characteristics and advanced spectroscopic and chemical analyses, including micro ultraviolet–visible–near-infrared (UV–Vis–NIR), Raman and laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS). The main inclusions in Longzi aquamarine are gas–liquid inclusions and a great number of quartz inclusions. The content of type I H₂O is greater than that of type II H₂O because of the low-alkali metal content, and “tetrahedral” substitutions and “octahedral” substitutions exist at the same time. Full article

Laser-induced breakdown spectroscopy (LIBS), accompanied by chemometric data analysis, is used to identify and classify gemstones of various hardness. The study involves several gemstones: amethyst, aquamarine beryl, bloodstone citrine, diopside, and enstatite. Their hardness is determined through a correlation utilizing the spectral intensity ratio of the ionic to atomic spectral lines of an identified element in the LIB spectrum. The result of the relative hardness obtained from the LIBS analysis is in good agreement with the hardness measured from Mohs’s scale of hardness, a popular qualitative method to determine hardness. In this work, a linear relationship has been established between the Mohs’s hardness and the plasma excitation temperature. Thus, the hardness of the gemstones can be determined with the help of plasma excitation temperature. Moreover, the analysis of trace elements in LIB spectral data reveals that a particular element is responsible for the colors of gemstones. Therefore, the relative concentration of constituents is calculated for all gemstones and compared. Principal component analysis (PCA) is successfully applied to all gemstone spectra for rapid classification and discrimination based on their variable elemental concentrations and respective hardness. Full article

We analyzed the whole-genome experimental maps of nucleosomes in Drosophila melanogaster and classified genes by the expression level in S2 cells (RPKM value, reads per kilobase million) as well as the number of tissues in which a gene was expressed (breadth of expression, BoE). Chromatin in 5′-regions of genes we classified on four states according to the hidden Markov model (4HMM). Only the Aquamarine chromatin state we considered as Active, while the rest three states we defined as Non-Active. Surprisingly, about 20/40% of genes with 5′-regions mapped to Active/Non-Active chromatin possessed the minimal/at least modest RPKM and BoE. We found that regardless of RPKM/BoE the genes of Active chromatin possessed the regular nucleosome arrangement in 5′-regions, while genes of Non-Active chromatin did not show respective specificity. Only for genes of Active chromatin the RPKM/BoE positively correlates with the number of nucleosome sites upstream/around TSS and negatively with that downstream TSS. We propose that for genes of Active chromatin, regardless of RPKM value and BoE the nucleosome arrangement in 5′-regions potentiates transcription, while for genes of Non-Active chromatin, the transcription machinery does not require the substantial support from nucleosome arrangement to influence gene expression. Full article

The Drosophila melanogaster polytene chromosomes are the best model for studying the genome organization during interphase. Despite of the long-term studies available on genetic organization of polytene chromosome bands and interbands, little is known regarding long gene location on chromosomes. To analyze it, we used bioinformatic approaches and characterized genome-wide distribution of introns in gene bodies and in different chromatin states, and using fluorescent in situ hybridization we juxtaposed them with the chromosome structures. Short introns up to 2 kb in length are located in the bodies of housekeeping genes (grey bands or lazurite chromatin). In the group of 70 longest genes in the Drosophila genome, 95% of total gene length accrues to introns. The mapping of the 15 long genes showed that they could occupy extended sections of polytene chromosomes containing band and interband series, with promoters located in the interband fragments (aquamarine chromatin). Introns (malachite and ruby chromatin) in polytene chromosomes form independent bands, which can contain either both introns and exons or intron material only. Thus, a novel type of the gene arrangement in polytene chromosomes was discovered; peculiarities of such genetic organization are discussed. Full article