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22 pages, 1200 KB  
Article
Evaluation of Salinity Tolerance Potentials of Two Contrasting Soybean Genotypes Based on Physiological and Biochemical Responses
by Mawia Sobh, Tahoora Batool Zargar, Oqba Basal, Ayman Shehada AL-Ouda and Szilvia Veres
Plants 2026, 15(1), 10; https://doi.org/10.3390/plants15010010 - 19 Dec 2025
Abstract
Salinity stress is a major abiotic constraint limiting soybean (Glycine max L.) productivity in saline–alkali soils; however, the physiological and biochemical mechanisms underlying genotypic tolerance remain poorly understood. This study aimed to identify key traits that underpin salinity tolerance and can inform [...] Read more.
Salinity stress is a major abiotic constraint limiting soybean (Glycine max L.) productivity in saline–alkali soils; however, the physiological and biochemical mechanisms underlying genotypic tolerance remain poorly understood. This study aimed to identify key traits that underpin salinity tolerance and can inform breeding and agronomic strategies to enhance soybean performance under saline conditions. Two contrasting soybean genotypes, YAKARTA and POCA, were exposed to 25, 50, 75, and 100 mM NaCl from the first to the fourth trifoliate stage (V1–V4) under controlled conditions for 30 days. YAKARTA maintained higher relative water content (75.51% vs. 66.97%), stomatal conductance (342 vs. 286 mmol H2O m−2 s−1), proline (6.15 vs. 4.36 µmol g−1 fresh weight), K+/Na+ ratio (61.8 vs. 32.2), and H2O2 (833.8 vs. 720.2 µmol g−1 fresh weight) compared with POCA, whereas POCA exhibited elevated solute leakage (87.1% vs. 79.21%), malondialdehyde (122 vs. 112 µg g−1), and ascorbic acid (334 vs. 293 µg g−1), indicating greater sensitivity. At 100 mM NaCl, relative water content, stomatal conductance, K+/Na+ ratio, and H2O2 declined by 44.5%, 81.9%, 99.8%, and 49.5%, respectively, while proline, solute leakage, malondialdehyde, and ascorbic acid increased by 56-, 1.27-, 11.6-, and 1.68-fold, respectively. The contrasting physiological and biochemical responses between these genotypes highlight key traits, such as relative water content, stomatal conductance, proline accumulation, malondialdehyde content, and the K+/Na+ ratio, as promising potential markers associated with salinity tolerance in soybean. These findings provide a foundational understanding that can guide future research to validate these markers across a wider genetic pool and under field conditions. Full article
12 pages, 566 KB  
Article
From Salt Tolerance Threshold Analysis to Optimized Cultivation: An Integrated Variety–Technology Pathway for the Forage Mulberry Variety ‘Fengyuan No. 1’
by Bing Geng, Yujie Ren, Yaru Dong, Guang Guo, Zhaohong Wang and Dongxiao Zhao
Agronomy 2026, 16(1), 3; https://doi.org/10.3390/agronomy16010003 - 19 Dec 2025
Abstract
This study aimed to establish an integrated variety–technology cultivation pathway for the new forage mulberry variety ‘Fengyuan No. 1’, linking salt tolerance mechanisms with practical application. A systematic investigation was conducted via a pot experiment with a 0–5‰ NaCl gradient and a field [...] Read more.
This study aimed to establish an integrated variety–technology cultivation pathway for the new forage mulberry variety ‘Fengyuan No. 1’, linking salt tolerance mechanisms with practical application. A systematic investigation was conducted via a pot experiment with a 0–5‰ NaCl gradient and a field trial comparing three cultivation modes: Ridge Planting (RP), Furrow Planting (FP), and Flat-Bed Planting (FBP). Key findings are as follows. (1) The salt tolerance threshold was clearly defined: a 100% survival rate at salinity ≤ 4‰ (with no injury symptoms at ≤3‰), and 5‰ identified as the lethal threshold (33.33% survival). Salt stress triggered a resource reallocation strategy, increasing the leaf-to-stem fresh weight ratio from 1.53 (0‰) to 2.78 (5‰) to prioritize leaf photosynthetic function. Stable leaf circularity (0.83–0.87) indicated morphological stress resistance. (2) Optimized cultivation pathways were identified: FBP was the core pathway for maximizing biomass accumulation (root, stem, and leaf fresh weights were 5.0, 2.3, and 1.5 times those of RP, respectively) and resulted in the lowest leaf Na+ accumulation (124 mg/kg), making it suitable for lightly to moderately saline–alkali land (≤4‰). FP served as an effective pathway for salt avoidance and height promotion (plant height: 113.18 cm). RP constituted a specialized pathway for high-quality forage, yielding the highest crude protein content (23.3 g/100 g). (3) Cultivation modes significantly affected functional components; FBP activated alkaloid DNJ synthesis (215.16 mg/kg), whereas RP and FP increased osmolyte GABA accumulation (~586 mg/kg). In conclusion, this study integrates a complete technical pathway from salt tolerance mechanism analysis to diversified cultivation options, providing a systematic variety–technology solution for the industrial development of forage mulberry on coastal saline–alkali land. Full article
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23 pages, 8882 KB  
Article
Genome-Wide Identification, Structural Characterization, and Stress-Responsive Expression of the PsPP2C Gene Family in Pea (Pisum sativum)
by Zhi-Wei Wang, Min Liu, Yun-Zhe Cong, Wen-Jiao Wang, Tao Zhang, Hui-Tong Sang, Song Hou, Zi-Meng Sun, Guan Li, Ru-Mei Tian, Yong-Yi Yang, Kun Xie, Longxin Wang, Kai-Hua Jia and Na-Na Li
Agronomy 2025, 15(12), 2920; https://doi.org/10.3390/agronomy15122920 - 18 Dec 2025
Abstract
Protein phosphatase 2Cs (PP2Cs) constitute a widespread family of signaling regulators in plants and play central roles in abscisic acid (ABA)-mediated stress signaling; however, the PP2C gene family has not yet been systematically identified and characterized in pea (Pisum sativum), a [...] Read more.
Protein phosphatase 2Cs (PP2Cs) constitute a widespread family of signaling regulators in plants and play central roles in abscisic acid (ABA)-mediated stress signaling; however, the PP2C gene family has not yet been systematically identified and characterized in pea (Pisum sativum), a salt-sensitive legume crop. In this study, we identified 89 PsPP2C genes based on domain features and sequence homology. These genes are unevenly distributed across seven chromosomes and classified into ten subfamilies, providing a comparative framework for evaluating structural and regulatory diversification within the PsPP2C family. The encoded proteins vary substantially in length, physicochemical properties, and predicted subcellular localization, while most members contain the conserved PP2Cc catalytic domain. Intra- and interspecies homology analyses identified 19 duplicated gene pairs in pea and numerous orthologous relationships with several model plants; all reliable gene pairs exhibited Ka/Ks < 1, indicating pervasive purifying selection. PsPP2C genes also showed broad variation in exon number and intron phase, and their promoter regions contained diverse light-, hormone-, and stress-related cis-elements with heterogeneous positional patterns. Expression profiling across 11 tissues revealed pronounced tissue-specific differences, with generally higher transcript abundance in roots and seeds than in other tissues. Under salt treatment, approximately 20% of PsPP2C genes displayed concentration- or time-dependent transcriptional changes. Among them, PsPP2C67 and PsPP2C82—both belonging to the clade A PP2C subfamily—exhibited the most pronounced induction under high salinity and at early stress stages. Functional annotation indicated that these two genes are involved in ABA-related processes, including regulation of abscisic acid-activated signaling pathway, plant hormone signal transduction, and MAPK signaling pathway-plant. Collectively, this study provides a systematic characterization of the PsPP2C gene family, including its structural features, evolutionary patterns, and transcriptional responses to salt stress, thereby establishing a foundation for future functional investigations. Full article
(This article belongs to the Special Issue Cultivar Development of Pulses Crop—2nd Edition)
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19 pages, 11088 KB  
Article
Unraveling the Saline–Alkali–Tolerance Mystery of Leymus chinensis Nongjing–4: Insights from Integrated Transcriptome and Metabolome Analysis
by Jianli Wang, Mingyu Wang, Zijian Zhang, Jinxia Li, Qiuping Shen, Yuanhao Zhang, Dongmei Zhang, Linlin Mou, Xu Zhuang, Wenhui Wang, Zhaohui Li, Long Han, Zhongbao Shen and Lixin Li
Plants 2025, 14(24), 3852; https://doi.org/10.3390/plants14243852 - 17 Dec 2025
Abstract
Soil salinization–alkalization is a critical abiotic constraint on global agriculture, threatening agroecosystem sustainability. Leymus chinensis, a high–quality perennial forage with strong stress resilience, is an ideal model for studying saline–alkali tolerance in graminaceous crops. We integrated physiological, transcriptomic, and metabolomic profiling to [...] Read more.
Soil salinization–alkalization is a critical abiotic constraint on global agriculture, threatening agroecosystem sustainability. Leymus chinensis, a high–quality perennial forage with strong stress resilience, is an ideal model for studying saline–alkali tolerance in graminaceous crops. We integrated physiological, transcriptomic, and metabolomic profiling to dissect its responses under moderate vs. severe carbonate stress, mimicking natural saline–alkali soils rather than single salt stress treatments. Multi–omics analysis revealed drastic reprogramming of energy metabolism, carbohydrate homeostasis, water transport, and secondary metabolism. Our novel finding reveals that L. chinensis uses stress–severity–dependent mechanisms, with flavonoid biosynthesis as a central “regulatory hub”: moderate saline–alkali stress acts as a stimulus for “Adaptive Activation” (energy + antioxidants), promoting growth, while severe stress exceeds tolerance thresholds, causing “systemic imbalance” (oxidative damage + metabolic disruption) and growth retardation. Via WGCNA and metabolome–transcriptome modeling, 22 transcription factors linked to key flavonoid metabolites were identified, functioning as molecular switches for stress tolerance. Our integrated approach provides novel insights into L. chinensis’ tolerance networks, and the flavonoid biosynthesis pathways and regulatory genes offer targets for precision molecular breeding to enhance forage stress resistance and mitigate yield losses from salinization–alkalization. Full article
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18 pages, 5252 KB  
Article
Transcriptomic and Physiological Responses Reveal a Time-Associated Multi-Organ Injury Pattern in European Perch (Perca fluviatilis) Under Acute Alkaline Stress
by Geng Chen, Yi Liu, Xiaodong Li, Pan Gao, Jianyong Hu, Pengfei Sun, Fangyuan Peng, Peng Chen and Jin Xu
Animals 2025, 15(24), 3621; https://doi.org/10.3390/ani15243621 - 16 Dec 2025
Viewed by 124
Abstract
Water alkalinization is a critical global stressor for freshwater fish, yet the systemic patterns of multi-organ responses and injury remain insufficiently understood. This study integrates histopathology, biochemistry, and multi-organ transcriptomics to provide an integrated, time-resolved assessment of stress responses in European perch ( [...] Read more.
Water alkalinization is a critical global stressor for freshwater fish, yet the systemic patterns of multi-organ responses and injury remain insufficiently understood. This study integrates histopathology, biochemistry, and multi-organ transcriptomics to provide an integrated, time-resolved assessment of stress responses in European perch (Perca fluviatilis) exposed to acute alkaline stress (20 mmol/L). The analysis indicated that alkaline stress initially causes structural disturbance of gill tissue (lamellar fusion, necrosis) within 96 h, associated with impaired osmoregulatory functions. This primary dysfunction was followed by progressive hepatic impairment, characterized by uncontrolled oxidative stress (elevated levels in Malondialdehyde, MDA) and widespread hepatocyte necrosis. Transcriptomic analysis identified extensive transcriptional shifts associated with these alterations: large-scale differential expression in the liver (3629 Differentially Expressed Genes, DEGs) and kidney (478 DEGs). Notably, the liver exhibited a stress-responsive transcriptional profile involving activation of the HIF-1 signaling pathway and mobilizing protein quality control systems (e.g., ‘Proteasome,’ ‘Lysosome’) consistent with mitigation of proteotoxic stress. This compensatory response appeared insufficient to prevent severe metabolic disruption and cellular injury. This study presents a time-associated sequence of organ-specific stress responses under acute alkalinity, identifying candidate stress-associated genes (slc7a11, egln3, klhl38b) as potential targets for future functional studies and breeding alkali-tolerant strains. Full article
(This article belongs to the Section Aquatic Animals)
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17 pages, 4831 KB  
Article
Genome-Wide Identification of β-D-Xylosidase Gene Family in Potato and Functional Analysis Under Alkaline Stress
by Shuangshuang Zheng, Xia Zhang, Caicai Lin, Peiyan Guan, Lu Liu, Mengyu Su, Qingshuai Chen, Ru Yu, Lingling Jiang, Ke Yao and Linshuang Hu
Plants 2025, 14(24), 3790; https://doi.org/10.3390/plants14243790 - 12 Dec 2025
Viewed by 198
Abstract
β-D-xylosidase (BXL) is a key enzyme involved in xylan degradation and plays crucial roles in plant development and stress responses. However, its functional roles in potato (Solanum tuberosum) remain poorly understood. In this study, we performed a genome-wide identification of the [...] Read more.
β-D-xylosidase (BXL) is a key enzyme involved in xylan degradation and plays crucial roles in plant development and stress responses. However, its functional roles in potato (Solanum tuberosum) remain poorly understood. In this study, we performed a genome-wide identification of the StBXL gene family and identified eight StBXL genes distributed across five chromosomes. A phylogenetic analysis classified these genes into four groups. Conserved motif and domain analyses indicated functional conservation among StBXL proteins. Analyses of cis-acting elements in the promoters and expression profiles of StBXL genes in various plant tissues under different stress treatments revealed their spatiotemporal expression patterns, as well as potential roles in phytohormone signaling and stress responses. Alkali stress significantly inhibited the expression of StBXL4 and StBXL5. The overexpression of StBXL4 enhanced the sensitivity of potato seedlings to alkali stress, whereas the overexpression of StBXL5 showed no significant phenotypic differences under the same conditions. These results suggest that StBXL4 acts as a negative regulator of the alkali stress response in potato. This study fills the research gap regarding the potato StBXL gene family and provides valuable insights for the molecular breeding of alkali-tolerant potato varieties. Full article
(This article belongs to the Special Issue Genetics and Physiology of Tuber and Root Crops)
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18 pages, 6012 KB  
Article
Combination of Functional Complementary Salt-Tolerant PGPR and Organic Amendments Modulates the Soil Micro-Environment and Promotes Wheat Growth
by Yanxia He, Zhifang Ning, Yushuang Cui, Xin Yue, Yali Huang and Changxiong Zhu
Agriculture 2025, 15(24), 2558; https://doi.org/10.3390/agriculture15242558 - 10 Dec 2025
Viewed by 188
Abstract
The individual application of salt-tolerant plant growth-promoting rhizobacteria (ST-PGPR) or organic amendments exhibits certain limitations in remediating saline-alkali soils. This study developed a co-application treatment by combining a functionally complementary ST-PGPR consortium (Bacillus velezensis and Bacillus marisflavi) with optimized organic amendments [...] Read more.
The individual application of salt-tolerant plant growth-promoting rhizobacteria (ST-PGPR) or organic amendments exhibits certain limitations in remediating saline-alkali soils. This study developed a co-application treatment by combining a functionally complementary ST-PGPR consortium (Bacillus velezensis and Bacillus marisflavi) with optimized organic amendments (biochar at 22.5 t·ha−1 and sheep-manure organic fertilizer at 7.5 t·ha−1) to enhance soil quality and wheat growth. Compared with the control, the combination of the ST-PGPR consortium with organic amendments significantly reduced soil electrical conductivity by 52.69%. while soil organic matter, alkaline nitrogen, available phosphorus, and available potassium increased by 54.37%, 7.68%, 11.85%, and 39.57%, respectively (p < 0.05). The activities of sucrase, urease, and catalase also increased by 147.69%, 28.56%, and 30.26%, respectively (p < 0.05). Furthermore, the combined treatment significantly promoted wheat growth, increasing plant height, root length, and fresh weight by 12.11%, 26.60%, and 35.00%, respectively (p < 0.05), while alleviating osmotic and oxidative stress. β-diversity analysis revealed distinct microbial community compositions across treatments, and microbial composition indicated that Actinobacteriota and Starmerella were enriched under the co-application. Additionally, the co-application significantly enhanced the complexity and interconnectivity of the bacterial network, while reducing the stability of the fungal network. Partial least squares path and random forest models identified soil chemical properties as the key factors driving wheat growth. This synergistic system presents a promising and sustainable strategy for remediating saline-alkali soils and enhancing crop productivity. Full article
(This article belongs to the Section Agricultural Soils)
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16 pages, 5843 KB  
Article
Identification and Functional Characterization of the CrRLK1L Gene Family in Salt Tolerance in Rice (Oryza sativa L.)
by Haoqiang Du, Xingyu Wang, Jifang Hu, Kefei Tan, Chuanzeng Liu and Bo Ma
Genes 2025, 16(12), 1454; https://doi.org/10.3390/genes16121454 - 4 Dec 2025
Viewed by 211
Abstract
Background: As key members of the plant receptor-like kinase family, rice CrRLK1Ls play diverse roles in plant growth, development, and stress responses. Although rice CrRLK1Ls have been initially characterized, our understanding of their functions remains limited. Methods: We identified OsCrRLK1L genes via Hidden [...] Read more.
Background: As key members of the plant receptor-like kinase family, rice CrRLK1Ls play diverse roles in plant growth, development, and stress responses. Although rice CrRLK1Ls have been initially characterized, our understanding of their functions remains limited. Methods: We identified OsCrRLK1L genes via Hidden Markov Model (HMM) searches against the rice genome. Subsequent analyses encompassed their physicochemical properties, chromosomal distribution, gene structure, phylogenetic relationships, conserved domains, and cis-acting elements.Salt-responsive candidates were screened using a GEO dataset, and their expression profiles were validated under salt stress using quantitative real-time PCR. Result: A total of 36 OsCrRLK1L genes, all containing both Malectin and tyrosine kinase domains, were identified in the rice genome and showed an uneven chromosomal distribution. Phylogenetic analysis classified them into three subclades, with Group II and Group III being specific to rice and Arabidopsis thaliana, respectively. Promoter analysis revealed that the promoter regions of these genes contained an abundance of cis-acting elements related to hormone and stress responses. RNA-Seq and enrichment analysis indicated that OsCrRLK1L genes exhibit tissue specificity and participate in salt stress responses. Furthermore, CrRLK1L2 and CrRLK1L10 showed tissue-specific differential expression under salt stress. Conclusions: In summary, our study lays the groundwork for future research into the biological roles of OsCrRLK1L genes during salt stress. Full article
(This article belongs to the Special Issue Molecular Genetics of Stress Response in Crops)
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21 pages, 1203 KB  
Review
Salt Tolerance in Soybean (Glycine max L.): A Comprehensive Review of Molecular Mechanisms, Key Regulators, and Future Perspectives for Saline Soil Utilization
by Tingjia Dong, Lei Yan, Jiahui Wang, Yusheng Niu and Lu Wang
Plants 2025, 14(23), 3668; https://doi.org/10.3390/plants14233668 - 2 Dec 2025
Viewed by 492
Abstract
Soil salinization poses a significant threat to global agricultural productivity. Among crops, soybean (Glycine max), an important source of oil and protein, is more susceptible to salt stress compared to other major crops such as wheat (Triticum aestivum) and [...] Read more.
Soil salinization poses a significant threat to global agricultural productivity. Among crops, soybean (Glycine max), an important source of oil and protein, is more susceptible to salt stress compared to other major crops such as wheat (Triticum aestivum) and rice (Oryza sativa). To better utilize saline land resources, understanding the mechanisms underlying salt tolerance in soybean is essential for developing new salt-tolerant soybean varieties that contribute to food security. This review synthesizes current knowledge on the molecular mechanisms of salt tolerance in soybean, with a focus on ion homeostasis, osmotic adjustment, oxidative balance restoration, structural adaptations, and transcriptional regulatory networks. Key findings highlight the critical roles of ion transporters—such as GmNHX1, GmSOS1, GmHKT1, and GmCLC1—in maintaining Na+/K+ and Cl balance; the accumulation of osmoprotectants like proline and LEA proteins to alleviate osmotic stress; and the activation of antioxidant systems—including SOD, CAT, and APX—to scavenge reactive oxygen species (ROS). Additionally, structural adaptations, such as salt gland-like features observed in wild soybean (Glycine soja), and transcriptional regulation via ABA-dependent and independent pathways (e.g., GmDREB, GmbZIP132, GmNAC) further enhance tolerance. Despite these advances, critical gaps remain regarding Cl transport mechanisms, rhizosphere microbial interactions, and the genetic basis of natural variation in salt tolerance. Future research should integrate genomic tools, omics-based breeding, genome editing techniques such as CRISPR-Cas9, microbial technologies, and traditional breeding methods to develop salt-tolerant soybean varieties, providing sustainable solutions for the utilization of saline–alkali soils and enhancing global food security. Full article
(This article belongs to the Section Plant Response to Abiotic Stress and Climate Change)
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18 pages, 5869 KB  
Article
Cloning and Functional Verification of Salt Tolerance Gene HbNHX2 in Hordeum brevisubulatum
by Mingzhi Zhang, Mei Yang, Wenjie Zhao, Hang Yin, Xinyi Zhang, Bing Li, Muzhapaer Tuluhong, Baiji Wang, Shanshui Zheng and Guowen Cui
Plants 2025, 14(23), 3658; https://doi.org/10.3390/plants14233658 - 30 Nov 2025
Viewed by 287
Abstract
A high salt environment seriously affects the physiological metabolism and yield of plants. Hordeum brevisubulatum (Trin.) Link has high biomass and important ecological, feeding and economic values, but its growth conditions have serious saline-alkali effects. The NHX gene family plays a vital role [...] Read more.
A high salt environment seriously affects the physiological metabolism and yield of plants. Hordeum brevisubulatum (Trin.) Link has high biomass and important ecological, feeding and economic values, but its growth conditions have serious saline-alkali effects. The NHX gene family plays a vital role in regulating intracellular Na+/K+ balance, pH homeostasis, and vesicle and protein transport in plants. In this study, the HbNHX2 gene was cloned from Hordeum brevisubulatum and functionally characterized through phenotypic, physiological, and molecular analyses in transgenic tobacco. Expression profiling revealed that HbNHX2 was most abundant in spikes and least abundant in root tips, and the expression level was significantly induced under salt stress. Overexpression of HbNHX2 led to decreased malondialdehyde (MDA) and superoxide anion (O2−) levels, while it enhanced the activities of superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT). Additionally, the levels of glutathione (GSH), soluble proteins, proline, and chlorophyll were also increased. Several stress-responsive genes, including CBL1, ERF2, BI-1, Cu/Zn-SOD, Mn-SOD, POD, GR1, KC1, TPK1, TIP, P5CS, BAS1, STN7 and LTP1, were significantly upregulated, while SERK3B was downregulated. These findings suggest that HbNHX2 enhances plant salt tolerance by maintaining osmotic balance, scavenging reactive oxygen species (ROS), and regulating stress-responsive gene expression. This study provides new insights into the molecular mechanism of salt tolerance in Hordeum brevisubulatum and lays a foundation for breeding salt-tolerant forage crops. Full article
(This article belongs to the Section Plant Genetics, Genomics and Biotechnology)
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22 pages, 4687 KB  
Article
Effects of Microbial Fertilizer on Soil Physicochemical Properties and Fungal Community Diversity in Saline–Alkali Soil Cultivated with Oil Sunflowers
by Shangqi Guan, Yantao Liu, Wei Duan, Kaiyong Wang, Peng Wang, Shengli Liu, Xiuping Jia and Yutong Hu
Agronomy 2025, 15(12), 2769; https://doi.org/10.3390/agronomy15122769 - 30 Nov 2025
Viewed by 376
Abstract
Soil salinization poses a significant threat to agricultural sustainability. This study investigated the effects of different microbial fertilizers on the rhizosphere fungal community and physicochemical properties of saline–alkali soil cultivated with sunflower. Three microbial fertilizers were applied at three concentration gradients to two [...] Read more.
Soil salinization poses a significant threat to agricultural sustainability. This study investigated the effects of different microbial fertilizers on the rhizosphere fungal community and physicochemical properties of saline–alkali soil cultivated with sunflower. Three microbial fertilizers were applied at three concentration gradients to two sunflower varieties with contrasting salt–alkali tolerance (salt-tolerant NX53177 and salt-sensitive NKY1502) to elucidate the mechanisms underlying microbial fertilizer-mediated amelioration of saline–alkali soils. Among all treatments, the application of Aikesa microbial fertilizer at 50 g per pot (treatments T8 and T17) demonstrated the most pronounced ameliorative effects. In the salt-tolerant variety NX53177, the 50 g/L Aikesa fertilizer treatment increased the relative abundance of the beneficial genus Mortierella by 46.2%. It decreased the potentially pathogenic genus Lophotrichus by 82.2% compared to the no-fertilizer control. Soil fungal diversity was significantly improved, with the Shannon index increasing by 9.86% and the Simpson index decreasing by 25.83%. Concurrently, critical soil properties were enhanced: soil pH decreased by 7.79%, salinity decreased by 3.13%, and the contents of organic matter, available nitrogen, available phosphorus, and available potassium increased by 42.13%, 49.96%, 12.34%, and 53.22%, respectively. In the salt-sensitive variety NKY1502, the 50 g/L Aikesa fertilizer treatment increased Mortierella abundance by 15.96% and decreased Lophotrichus by 73.6% compared to the no-fertilizer control. The ACE and Shannon diversity indices increased by 10.00% and 9.92%, respectively, while the Simpson index decreased by 12.17%. Soil health was also markedly improved, with pH decreasing by 7.47%, salinity by 2.95%, and substantial increases in organic matter (57.94%), available nitrogen (75.78%), available phosphorus (13.20%), and available potassium (52.97%). In conclusion, the 50 g/L Aikesa fertilizer treatment effectively improved the rhizosphere fungal community structure and significantly enhanced soil physicochemical properties under saline–alkali stress. These findings provide a theoretical foundation and practical guidance for utilizing microbial fertilizers in ecological restoration and sustainable agricultural development of saline–alkali lands. Full article
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16 pages, 5605 KB  
Article
Phosphatidic Acid Homeostasis and Membrane Lipid Remodeling Confer Salt Tolerance in Zoysia japonica by Stabilizing Metabolic Networks and a Putative SOS Signaling Activation
by Qinhao Yang, Xiangcui Zeng, Zhenzhen Liu, Zhongkuan Liu, Qiannan Hu and Mingna Li
Plants 2025, 14(23), 3630; https://doi.org/10.3390/plants14233630 - 28 Nov 2025
Viewed by 307
Abstract
Soil salinization poses a major threat to plant growth and ecosystem sustainability. Zoysia japonica, a salt-tolerant turfgrass, shows promise for saline–alkali soil remediation, yet its metabolic adaptation mechanisms remain poorly understood. Here, we applied non-targeted liquid chromatography/mass spectrometry (LC/MS) metabolomics to compare [...] Read more.
Soil salinization poses a major threat to plant growth and ecosystem sustainability. Zoysia japonica, a salt-tolerant turfgrass, shows promise for saline–alkali soil remediation, yet its metabolic adaptation mechanisms remain poorly understood. Here, we applied non-targeted liquid chromatography/mass spectrometry (LC/MS) metabolomics to compare the responses of salt-tolerant (accession 68) and salt-sensitive (accession 9) genotypes of Z. japonica under salt stress. The sensitive genotype exhibited stronger metabolic disruption, with 843 differentially accumulated metabolites (largely down-regulated), compared with 595 in the tolerant genotype (predominantly up-regulated). We identified a coordinated tolerance mechanism primarily centered on lipid remodeling and energy maintenance. The tolerant genotype enhanced membrane stability through the accumulation of saturated glycerophospholipids and an increased phosphatidylcholine/phosphatidylethanolamine (PC/PE) ratio, while maintaining phosphatidic acid (PA) homeostasis which may facilitate SOS-dependent Na+ efflux. It also mitigated oxidative damage by stabilizing diacylglycerol (DAG), thereby potentially limiting protein kinase C (PKC) overactivation. Furthermore, sustained cardiolipin and riboflavin metabolism supported mitochondrial energy production in the tolerant genotype. Together, these findings provide new insights into the early metabolic basis of salt tolerance in Z. japonica, suggesting a potential crucial role for PA-mediated regulation of SOS-dependent sodium sequestration during the initial phase of stress, and implying potential targets for breeding stress-resilient turfgrasses. Full article
(This article belongs to the Special Issue Stress Biology of Turfgrass—2nd Edition)
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17 pages, 1988 KB  
Article
Synergistic Application of Humic Acid and Microbial Fertilizers Improve Soil Quality, Reshape Microbial Network, and Enhance Wheat Yield in Coastal Saline–Alkali Soils
by Lei Ma, Yudong Li, Yufeng Zhang, Yan Li, Jianlin Wei, Zhaohui Liu and Deshui Tan
Microorganisms 2025, 13(12), 2716; https://doi.org/10.3390/microorganisms13122716 - 28 Nov 2025
Viewed by 414
Abstract
Coastal saline–alkali soils represent one of the most challenging agroecosystems due to coupled chemical, physical, and biological constraints. Although humic acid (HA) and microbial fertilizers (MFs) are recognized as effective amendments, the mechanisms linking soil improvements to yield gains remain unclear. Here, a [...] Read more.
Coastal saline–alkali soils represent one of the most challenging agroecosystems due to coupled chemical, physical, and biological constraints. Although humic acid (HA) and microbial fertilizers (MFs) are recognized as effective amendments, the mechanisms linking soil improvements to yield gains remain unclear. Here, a 2-year field experiment was conducted in the Yellow River Delta to assess the effects of HA, applied alone or in combination with Bacillus subtilis and Trichoderma harzianum, on soil salinity, nutrient availability, aggregate stability, microbial communities, and wheat yields. Results showed that HA application alone reduced soil electrical conductivity (EC) and total soluble salts (TSS), and enhanced aggregate mean weight diameter (MWD), leading to 40.94–55.64% higher yields. Co-application with MFs further amplified these improvements, lowering EC and TSS up to 77.04% and 73.83%, enhancing MWD by 122.50%, and raising yields by 75.79%. Soil enzyme activities (e.g., catalase, β-glucosidase, urease, and alkaline phosphatase) and fungal diversity were substantially enhanced, whereas bacterial diversity showed no significant change. Co-occurrence network analysis demonstrated that application of HA with MFs (particularly with B. subtilis) reshaped microbial networks by enriching modules linked to nutrient provisioning, aggregate stability, and enzyme activity, while suppressing modules associated with salinity tolerance. Keystone species such as Lysobacter and Massilia were significantly enriched and closely associated with soil chemical and aggregate improvements. Structural equation modeling further revealed that yield gains were mainly explained by reduced salinity and enhanced aggregate stability rather than nutrient provisioning. These findings provide mechanistic evidence that HA improves soil quality and wheat productivity in coastal saline–alkali soils through integrated chemical, physical, and biological pathways, and that these benefits are strengthened when combined with microbial fertilizers. Full article
(This article belongs to the Special Issue Microbial Mechanisms for Soil Improvement and Plant Growth)
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19 pages, 2741 KB  
Article
Genome-Wide Characterization, Expression, and Functional Analysis of Acyl-CoA-Binding Protein (ACBP) Gene Family in Puccinellia tenuiflora
by Hongxia Zheng, Ying Li, Sizhu Wang, Xin Ni, Xiaofeng Xu and Shaojun Dai
Plants 2025, 14(23), 3551; https://doi.org/10.3390/plants14233551 - 21 Nov 2025
Viewed by 397
Abstract
Acyl-CoA-binding proteins (ACBPs) possess a conserved acyl-CoA-binding (ACB) domain that facilitates binding to acyl-CoA esters. In addition to their typical role in lipid metabolism, plant ACBPs have been shown to participate in various physiological processes, such as membrane biogenesis, stress response pathways and [...] Read more.
Acyl-CoA-binding proteins (ACBPs) possess a conserved acyl-CoA-binding (ACB) domain that facilitates binding to acyl-CoA esters. In addition to their typical role in lipid metabolism, plant ACBPs have been shown to participate in various physiological processes, such as membrane biogenesis, stress response pathways and plant immunity mechanisms. Here, we identified five PutACBP members in alkaligrass (Puccinellia tenuiflora), which were divided into four distinct classes based on a phylogenetic tree constructed from 86 ACBP genes from 12 plant species. Promoter analysis identified numerous cis-acting elements linked to abiotic stresses (e.g., light, drought, heat, and cold) and hormone responses. Expression profile analyses revealed that PutACBPs exhibit broad expression patterns across many organs and respond to salinity-alkali, cold, H2O2, and CdCl2 stresses. Transient expression of five PutACBP-GFPs in tobacco (Nicotiana tabacum) revealed PutACBP1 and PutACBP2 localized to the plasma membrane, cytoplasm, and cell nucleus, while PutACBP3, PutACBP4, and PutACBP5 localized around the plasma membrane and cytoplasm. Furthermore, heterologous constitutive expression of PutACBP3 in Arabidopsis (Arabidopsis thaliana) enhanced the resistance of transgenic plants to salinity stress, possibly through alterations in the levels of lipid metabolism-related and stress-responsive genes. The ACBP gene family is highly conserved across different plant species. This study provides the first comprehensive genomic and functional characterization of the PutACBP family in alkaligrass, elucidating its evolutionary conservation, phylogenetic classification, and stress-response roles. Notably, overexpression of PutACBP3 in Arabidopsis significantly enhanced salt tolerance, suggesting its critical function in salt-stress adaptation in alkaligrass. Full article
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19 pages, 3694 KB  
Article
The Ionic and Metabolic Response Mechanisms of Kochia scoparia in Response to Saline–Alkaline Stress
by Xueyan Lu, Hui Fang, Qi Chen and Ying Zhang
Plants 2025, 14(22), 3540; https://doi.org/10.3390/plants14223540 - 20 Nov 2025
Viewed by 344
Abstract
Saline–alkaline stress is a critical environmental issue that limits plant growth and crop production. With the expansion of salinized land, investigating the response mechanisms of plants to salt–alkali stress is crucial. Integrated ionomic and metabolomic analyses were employed to investigate the response mechanisms [...] Read more.
Saline–alkaline stress is a critical environmental issue that limits plant growth and crop production. With the expansion of salinized land, investigating the response mechanisms of plants to salt–alkali stress is crucial. Integrated ionomic and metabolomic analyses were employed to investigate the response mechanisms of Kochia scoparia in our studies. Compared with the halophyte Suaeda salsa, K. scoparia exhibits distinct ionic and metabolic strategies for coping with saline–alkaline stress. Ca, Mg, and B were significantly accumulated in K. scoparia to alleviate ion toxicity and oxidative damage and to maintain cellular stability at the ionic element level. Sugars, alcohols, esters, and phenolic compounds were found to play key roles in resisting saline–alkaline stress at the metabolic level. Among these, sugars, alcohols, and esters were mainly involved in mitigating salt stress. Targeted metabolomic analysis indicated that certain phenolic compounds—namely C6C1-compounds (p-hydroxybenzoic, gallic, vanillic, salicylic, and syringic acids), C6C3 (caffeic acid, p-coumaric, p-hydroxycinnamic, cinnamic, and ferulic acids), and C6C3C6 (naringenin, quercetin, genistein, petunidin, and luteolin)—were significantly accumulated in K. scoparia. These compounds help mitigate saline–alkaline stress by enhancing reactive oxygen species (ROS) scavenging, modulating signaling pathways, reprogramming the osmoprotectant metabolism, and remodeling cell wall defense. This study elucidates the advantages and mechanistic of K. scoparia’s tolerance to saline–alkaline stress, providing a theoretical foundation for the repair and utilization of saline–alkaline soils. Full article
(This article belongs to the Special Issue Plant Functioning Under Abiotic Stress)
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