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27 pages, 6467 KB  
Review
Hemoglobin—A Review of Structure, Mechanisms and Analysis in the Clinical Diagnostic Laboratory
by Neil S. Harris, Paul Boothe, Hanna Mbatia, William E. Winter and Maximo J. Marin
LabMed 2026, 3(2), 15; https://doi.org/10.3390/labmed3020015 - 31 May 2026
Viewed by 440
Abstract
This review focuses on the analysis of hemoglobin in the clinical laboratory with an emphasis on the structure–function relationships of hemoglobin and the various methodologies used for its measurement. In clinical laboratories, hemoglobin analysis may take on many forms. These include measuring the [...] Read more.
This review focuses on the analysis of hemoglobin in the clinical laboratory with an emphasis on the structure–function relationships of hemoglobin and the various methodologies used for its measurement. In clinical laboratories, hemoglobin analysis may take on many forms. These include measuring the concentration of hemoglobin, as well as determining the percentage of oxyhemoglobin, deoxyhemoglobin and dyshemoglobins such as carboxyhemoglobin. There are also techniques available to estimate the oxygen affinity of hemoglobin. Hemoglobin separation techniques by means of electrophoresis or chromatography are essential in the diagnosis of hemoglobinopathies (such as sickle cell anemia) and thalassemias, where there is an imbalance in globin chain synthesis. Hemoglobin contains four globin subunits, which create a unique quaternary structure in which the oxygen affinity can be changed by allosteric modifiers, including oxygen itself. The heme iron-containing tetrapyrrole ring not only carries oxygen; it also controls the binding of oxygen to the other globin subunits. The organization and regulation of the globin genes are discussed to provide essential biological context for informed interpretation of clinical test results. Building on this foundation, selected hemoglobinopathies and thalassemias are highlighted to further illustrate structure–function relationships and their implications for diagnostic testing. However, an exhaustive analysis of hemoglobinopathies is beyond the intended scope of this review, which is not meant to be all-encompassing, as these subjects are extensively addressed in many textbooks and published articles and reviews. Full article
(This article belongs to the Special Issue Laboratory Medicine in Hematology)
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13 pages, 12231 KB  
Article
Development of an Integrated CE-Cell-SELEX Strategy for Rational Selection of Human Bone Microvascular Endothelial Cell Aptamers
by Xinyu Fang, Wenting Pan, Jiefang Sun, Xiaojing Ding, Bing Shao, Jie Ouyang and Yiyang Dong
Molecules 2026, 31(11), 1881; https://doi.org/10.3390/molecules31111881 - 31 May 2026
Viewed by 304
Abstract
Capillary electrophoresis (CE) has proven to be an effective technique for aptamer selection. Here, we directly integrated the separation advantages of CE into a live-cell system, thereby establishing an integrated and highly efficient CE-Cell-SELEX screening model for bone microvascular endothelial cells (BMECs) without [...] Read more.
Capillary electrophoresis (CE) has proven to be an effective technique for aptamer selection. Here, we directly integrated the separation advantages of CE into a live-cell system, thereby establishing an integrated and highly efficient CE-Cell-SELEX screening model for bone microvascular endothelial cells (BMECs) without the need for negative selection. The selection progress was monitored through quantitative real-time fluorescence PCR (qRT-PCR) analysis, which yielded 7 candidate sequences from the amplified library after four rounds of selection. Flow cytometry analysis demonstrated that aptamer T-24 exhibited high affinity for BMECs, with a Kd of 111.86 ± 18.36 nM. Owing to its high affinity and specificity, coupled with its small molecular weight and non-immunogenicity, T-24 holds great potential as a biological probe for the identification and isolation of BMECs. Furthermore, molecular docking was performed by MOE 2022 software to validate the candidate sequences and assist in the identification process. The CE-Cell-SELEX method eliminates the need for negative screening and traditional elution, greatly reduces the screening cycle, and may provide a valuable reference system for the early diagnosis and precise treatment of femoral head ischemia. Full article
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17 pages, 1943 KB  
Article
Development and Preliminary Validation of a MALDI-TOF MS Assay Using KTI as an Internal Standard for Serum M-Protein Light Chain Analysis in Multiple Myeloma: A Pilot Study
by Jin Wang, Yiming Zhao, Shuanglian Xie, Huihui Liu, Mingyi Di, Bingjie Wang, Bo Tang, Weiwei Xie, Xiaoying Yang, Zhizhen Lai and Yujun Dong
Medicina 2026, 62(6), 1057; https://doi.org/10.3390/medicina62061057 - 29 May 2026
Viewed by 359
Abstract
Background and Objectives: Conventional assays for M-protein detection in multiple myeloma (MM), including serum immunofixation electrophoresis (sIFE) and serum free light-chain (sFLC) assays, have limitations in selected clinical settings. This pilot study aimed to develop and preliminarily validate a matrix-assisted laser desorption/ionization [...] Read more.
Background and Objectives: Conventional assays for M-protein detection in multiple myeloma (MM), including serum immunofixation electrophoresis (sIFE) and serum free light-chain (sFLC) assays, have limitations in selected clinical settings. This pilot study aimed to develop and preliminarily validate a matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS)-based workflow using Kunitz trypsin inhibitor (KTI) as an internal standard for patient-specific serum M-protein light-chain tracking, particularly in low-level post-treatment samples in which conventional assays may be negative or difficult to interpret. Materials and Methods: A total of 55 serum samples from 25 patients with MM were analyzed. Serum immunoglobulin light-chain species were enriched using mixed κ/λ affinity beads, followed by reduction, KTI-based calibration, and MALDI-TOF MS analysis. Quantitative performance was evaluated using purified IgG1 κ standards. Time-matched sIFE and sFLC ratio results were used for descriptive comparison. Results: After KTI-based calibration, patient-specific M-protein light-chain molecular masses could be consistently identified. The assay showed good linearity over the range of 0.20–10.00 μg/mL, with a calibration equation of y = 6.0228x + 0.1063 and an R2 of 0.9961. The limit of detection and limit of quantification were 0.002 μg/mL and 0.008 μg/mL, respectively. Intra-day and inter-day precision were acceptable, and recovery ranged from 96.0% to 101.2%. In selected low-level or discordant samples, including cases with therapeutic interference, polyclonal background, or non-secretory disease, MALDI-TOF MS provided exploratory complementary monitoring information. Conclusions: This KTI-calibrated MALDI-TOF MS workflow showed preliminary analytical performance within the validated low-concentration range and may serve as a complementary approach for patient-specific serum M-protein light-chain monitoring in selected clinical settings of MM. Larger independent studies are required before its clinical utility can be established. Full article
(This article belongs to the Section Hematology and Immunology)
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36 pages, 9313 KB  
Article
Development of Bispecific Antibody Targeting Human IL-17A and IL-6
by Beata Pamuła, Martyna Banach, Marta Mikońska, Karolina Korytkowska, Krzysztof Lacek, Oliwia Śniadała, Małgorzata Marczak, Krzysztof Flis, Aleksandra Sowińska, Damian Kołakowski, Jerzy Pieczykolan, Beata Zygmunt, Maciej Wieczorek and Olga Abramczyk
Antibodies 2026, 15(2), 29; https://doi.org/10.3390/antib15020029 - 30 Mar 2026
Viewed by 1711
Abstract
Background/Objectives: Antibodies are a rapidly expanding field in drug discovery, but their monospecificity limits therapeutic applications, particularly in complex inflammatory diseases. Multispecific therapeutics, which combine variable regions targeting two or more antigens, offer potential advantages such as enhanced efficacy, broader target modulation, [...] Read more.
Background/Objectives: Antibodies are a rapidly expanding field in drug discovery, but their monospecificity limits therapeutic applications, particularly in complex inflammatory diseases. Multispecific therapeutics, which combine variable regions targeting two or more antigens, offer potential advantages such as enhanced efficacy, broader target modulation, and reduced side effects. This study aimed to identify and characterize bispecific, VHH-based antibodies simultaneously targeting IL-6 and IL-17A—two key cytokines involved in autoimmune and chronic inflammatory conditions. Methods: A phage display screening was conducted using llama-derived VHH libraries to select binders against human IL-6 and IL-17A. Binding affinities of individual VHHs and assembled bispecific constructs were assessed using Bio-Layer Interferometry (BLI). Functional activity was evaluated using reporter cell lines responsive to IL-6 and IL-17A signaling. Biophysical and quality assessments of selected VHHs and bispecific antibodies were performed using the Uncle screening platform and LabChip capillary electrophoresis. Results: Several high-affinity VHH binders were identified for both IL-6 and IL-17A, and incorporated into bispecific antibody formats. The bispecific candidates exhibited simultaneous inhibition of both cytokine pathways in functional reporter assays. Biophysical characterization confirmed good stability and purity profiles for selected molecules. Conclusions: This study demonstrates the feasibility of generating stable, functional bispecific VHH-based antibodies targeting IL-6 and IL-17A. These constructs show potential as therapeutic agents for treating autoimmune and chronic inflammatory diseases by modulating multiple signaling pathways simultaneously. Full article
(This article belongs to the Section Antibody Discovery and Engineering)
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25 pages, 6630 KB  
Article
Surface and Structural Characterization of Buckwheat Husk-Derived Activated Carbons: Correlation of SEM, Elemental, FTIR, Raman, and Porous Properties with Electrokinetic Behavior
by Laura Seimukhanova, Ulan Zhantikeyev, Inabat Sapargali, Makhabbat Kunarbekova, Kenes Kudaibergenov, Ewa Skwarek and Seitkhan Azat
Int. J. Mol. Sci. 2026, 27(4), 1803; https://doi.org/10.3390/ijms27041803 - 13 Feb 2026
Cited by 1 | Viewed by 597
Abstract
This study focuses on the synthesis and characterization of buckwheat husk-derived activated carbon, chemically activated with potassium hydroxide (KOH) and subsequently modified with urea and Prussian Blue (PB). The obtained carbons were evaluated in terms of particle-size distribution, surface morphology, structural features, and [...] Read more.
This study focuses on the synthesis and characterization of buckwheat husk-derived activated carbon, chemically activated with potassium hydroxide (KOH) and subsequently modified with urea and Prussian Blue (PB). The obtained carbons were evaluated in terms of particle-size distribution, surface morphology, structural features, and electrokinetic properties using scanning electron microscopy coupled with energy-dispersive X-ray spectroscopy (SEM–EDS), Fourier-transform infrared spectroscopy (FTIR), Raman spectroscopy, and electrophoresis, as well as N2 adsorption–desorption (BET surface area and porosity analysis). The results confirmed that both pyrolysis conditions and the type of modifier significantly affect the physicochemical properties of the activated carbon and its behavior in electrolyte solutions. Colloidal stability and particle size were strongly dependent on pH and the type of anions present in solution, with sodium nitrate (NaNO3) systems showing higher stability than sodium chloride (NaCl). Modification with KOH and urea imparted a more basic surface character, whereas PB introduced more acidic properties. All samples exhibited predominantly negative surface charges and mesoporous structures, which are favorable for adsorption processes and enhance affinity for heavy-metal cations. Among the tested materials, BH-KOH-Fe (Fe-modified KOH-activated carbon) showed the most favorable performance for the targeted application, while BH-KOH (KOH-activated buckwheat husk-derived carbon) exhibited high surface area and good colloidal stability. The prepared materials show promising applicability for water purification, including the removal of organic pollutants and radionuclides (e.g., 137Cs and 90Sr), as well as metal cations (K+, Na+, and Li+). Full article
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12 pages, 724 KB  
Article
Population of Northern Portugal: Study of Genetic Diversity and Forensic Parameters of 26 Y-STR Markers
by Bárbara Maia, Jennifer Fadoni, Laura Cainé, Luís Souto and António Amorim
Genes 2026, 17(1), 101; https://doi.org/10.3390/genes17010101 - 19 Jan 2026
Cited by 1 | Viewed by 974
Abstract
Background: Short tandem repeats (STRs) are highly variable sequences present along the human genome, including the Y-chromosome. Y-STRs are exclusive to males, and the haplotypes they define are informative. Objectives: Twenty-six Y-STR loci were genotyped in 252 males from Northern Portugal [...] Read more.
Background: Short tandem repeats (STRs) are highly variable sequences present along the human genome, including the Y-chromosome. Y-STRs are exclusive to males, and the haplotypes they define are informative. Objectives: Twenty-six Y-STR loci were genotyped in 252 males from Northern Portugal to characterise Y-chromosome genetic variation using the Investigator Argus Y28 QS Kit. Methods: The kit mentioned was used to amplify male DNA samples, and capillary electrophoresis was used to analyze the fragments. Forensic parameters and haplotype diversity were computed, and samples’ haplogroups were predicted. A multidimensional scaling (MDS) plot was used to graphically represent the RST genetic distances, including reference populations. Results: A total of 250 different haplotypes were observed, including 248 unique ones, yielding a very high haplotype diversity (HD = 0.999) and discriminatory power (DP = 0.992). Haplogroup analysis indicated a predominance of R1b (58.7%), followed by E1b1b, I and J, pointing to a population history shaped by Mediterranean and North African gene flow. Comparative analysis between Portugal and 5 other populations showed greater genetic affinity with Spain and Italy, while revealing marked differentiation from Greece, Morocco, and former Portuguese colonies. Conclusions: The results confirm that the Northern Portuguese Population exhibits high Y-STR variability and robust forensic resolution. The dataset was submitted to the YHRD database, enhancing the representation of the Portuguese population and underscoring the value of the 26 locus panel for applications in forensic science, genealogy, and population genetics. Full article
(This article belongs to the Section Population and Evolutionary Genetics and Genomics)
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10 pages, 981 KB  
Case Report
First Symptomatic Pediatric Case of Hb Rothschild (HBB: c.112T>C, p.Trp38Arg): Low-Oxygen-Affinity Hemoglobin Presenting with Persistent Pseudohypoxemia
by Ekaterina Nuzhnaya, Andrey Marakhonov, Artem Ivanov, Yulia Lashkova, Ivan Kuznetsov, Tatiana Kulichenko, Ksenya Zabudskaya, Oxana Ryzhkova, Nikolay Zernov and Natalia Semenova
Diagnostics 2025, 15(24), 3181; https://doi.org/10.3390/diagnostics15243181 - 12 Dec 2025
Viewed by 656
Abstract
Background: Hemoglobin Rothschild (Hb Rothschild), NM_000518.5(HBB):c.112T>C, is an ultra-rare low-oxygen-affinity hemoglobin variant that persistently causes reduced peripheral oxygen saturation on pulse oximetry despite normal arterial oxygenation. Fewer than ten cases have been reported worldwide, and only one involved a child—an [...] Read more.
Background: Hemoglobin Rothschild (Hb Rothschild), NM_000518.5(HBB):c.112T>C, is an ultra-rare low-oxygen-affinity hemoglobin variant that persistently causes reduced peripheral oxygen saturation on pulse oximetry despite normal arterial oxygenation. Fewer than ten cases have been reported worldwide, and only one involved a child—an asymptomatic carrier identified incidentally. Methods: The patient underwent clinical examination, growth assessment, blood tests, hemoglobin electrophoresis, chest CT, abdominal ultrasound, echocardiography, and pulmonary perfusion scintigraphy. Whole genome sequencing (WGS) of the proband and parents was performed, followed by bioinformatic analysis and ACMG-based variant interpretation. A PRISMA-guided PubMed literature review was conducted. Results: We report on the first pediatric case exhibiting a symptomatic clinical course. A 4-year-old boy was referred for chronically low peripheral oxygen saturation (SpO2), 78–86%, on pulse oximetry and recurrent lower respiratory tract infections. Early developmental history revealed episodes of apnea in infancy, perioral cyanosis, poor exercise tolerance, and low weight gain. Repeated cardiopulmonary assessments, chest computed tomography (CT), echocardiography, and pulmonary perfusion scintigraphy yielded unremarkable findings. Arterial blood gas analysis consistently showed normal arterial partial pressure of oxygen (PaO2), excluding true hypoxemia. Hemoglobin electrophoresis revealed an abnormal HbD fraction; WGS identified a heterozygous variant NM_000518.5(HBB):c.112T>C inherited from the patient’s asymptomatic father. This variant increases the partial pressure of oxygen at which hemoglobin is 50% saturated (p50), thereby decreasing hemoglobin’s oxygen affinity and shifting the oxyhemoglobin dissociation curve to the right. These alterations explain the discordance between low peripheral oxygen saturation (SpO2) and preserved oxygen delivery to tissues. Conclusions: This case expands the clinical spectrum of Hb Rothschild and demonstrates that symptomatic presentation may occur in early childhood. Awareness of low-affinity hemoglobin variants is essential to avoid misdiagnosis and unnecessary cardiopulmonary interventions. Early genetic testing facilitates accurate diagnosis and appropriate counseling. Full article
(This article belongs to the Special Issue Insights into Pediatric Genetics)
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18 pages, 2122 KB  
Review
The Effects of Counter-Ions on Peptide Structure, Activity, and Applications
by Ying Liu, Yi Huang, Lan Yang, Yu Gao, Zheng Jia, Tingting Liu, Baoling Su, Chuyuan Wang, Lili Jin and Dianbao Zhang
Biomolecules 2025, 15(11), 1567; https://doi.org/10.3390/biom15111567 - 7 Nov 2025
Cited by 5 | Viewed by 3042
Abstract
Peptide drug development has emerged as a prominent area in pharmaceutical research due to its high specificity and therapeutic potential. However, their biological activity, stability, and bioavailability are significantly influenced by interactions with counter-ions, which electrostatically bind to charged residues on peptide surfaces. [...] Read more.
Peptide drug development has emerged as a prominent area in pharmaceutical research due to its high specificity and therapeutic potential. However, their biological activity, stability, and bioavailability are significantly influenced by interactions with counter-ions, which electrostatically bind to charged residues on peptide surfaces. This review systematically examines the multifaceted roles of counter-ions in modulating peptide structure and function. Counter-ions are classified into organic/inorganic and anionic/cationic categories, with their selection critically impacting peptide solubility, conformational stability, and activity. Inorganic counter-ions could enhance structural integrity, while organic counter-ions could mitigate toxicity risks. Notably, counter-ions can induce secondary structural transitions, directly affecting biological efficacy. Furthermore, counter-ions play pivotal roles in drug delivery systems, including nanoemulsions, self-emulsifying formulations, and lipid-based nanoparticles, where hydrophobic ion pairing improves encapsulation efficiency and oral bioavailability. In chromatography, ion-pairing reagents optimize peptide separation but may compromise mass spectrometry compatibility. Emerging analytical techniques, such as capillary electrophoresis and liquid chromatography–tandem mass spectrometry (LC-MS/MS), enhance counter-ion detection precision, addressing challenges in pharmaceutical quality control. Despite advancements, gaps remain in understanding ion-specific binding mechanisms and long-term safety profiles. This review underscores the necessity of tailoring counter-ion selection to balance efficacy, stability, and biocompatibility. Future research should prioritize elucidating molecular interaction dynamics and developing safer, high-affinity counter-ions to overcome current limitations in peptide drug development. Full article
(This article belongs to the Section Natural and Bio-derived Molecules)
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21 pages, 2521 KB  
Article
Encapsulation of rhBMP-2 as a Strategy for Dose Shielding Whilst Preserving Structural Integrity, Bioactivity, and Osteogenic Potential
by Charles Matthews, Elisa Tarsitano, Sejal Odedra, Whitney Holden, Dhanaraman Thillai Villalan, Sina Kavalakatt, Kalhari Silva, Laura-Marie A. Zimmermann and John von Benecke
Processes 2025, 13(11), 3395; https://doi.org/10.3390/pr13113395 - 23 Oct 2025
Cited by 2 | Viewed by 965
Abstract
Recombinant human bone morphogenetic protein-2 (rhBMP-2) is widely used to promote bone regeneration. However, conventional surface-attached delivery on absorbable collagen sponges causes a rapid burst release, excessive inflammation, and suboptimal healing. To overcome these limitations, we developed a thermally controlled Poly(DL-lactide-co-glycolide) (PDL [...] Read more.
Recombinant human bone morphogenetic protein-2 (rhBMP-2) is widely used to promote bone regeneration. However, conventional surface-attached delivery on absorbable collagen sponges causes a rapid burst release, excessive inflammation, and suboptimal healing. To overcome these limitations, we developed a thermally controlled Poly(DL-lactide-co-glycolide) (PDLLGA) encapsulation system, designed to stabilize rhBMP-2 and enable controlled release. rhBMP-2 was incorporated in PDLLGA pellets using the hot-melt extrusion of a lyophilized mixture containing poloxamer 407 and hydroxypropyl-β-cyclodextrin, and terminal sterilization (X-ray irradiation). The released rhBMP-2 maintained its molecular integrity after sterilization and remained stable for up to 732 days in storage, as confirmed by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and capillary electrophoresis (CE). Further, high-affinity binding between released rhBMP-2 and BMPR-IA was confirmed by bio-layer interferometry (BLI), and the released protein induced a robust in vitro ALP response, confirming preserved osteogenic activity. Our encapsulation approach for rhBMP-2 using PDLLGA, including the combination product with β-TCP (LDGraft; Locate Bio, Nottingham, UK), provides a stable and bioactive rhBMP-2 delivery strategy with inherent dose-shielding properties, supporting safe, controlled, and effective bone regeneration therapies. Full article
(This article belongs to the Special Issue Pharmaceutical Development and Bioavailability Analysis, 2nd Edition)
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20 pages, 2545 KB  
Article
Impacts of Tween-20, Glycerol, and Trehalose on Hyaluronidase Activity: Insights from Microscale Thermophoresis and Capillary Electrophoresis
by Rouba Nasreddine, Josipa Cecić Vidoš, Alexandra Launay and Reine Nehmé
Molecules 2025, 30(19), 4008; https://doi.org/10.3390/molecules30194008 - 7 Oct 2025
Cited by 1 | Viewed by 2129
Abstract
Additives such as surfactants (Tween-20) and cryoprotectants (glycerol and trehalose) are often used in enzymatic assays to improve the quality and long-term stabilization of proteins. However, these additives can affect the enzymatic activity and the enzyme’s affinity for active compounds, such as inhibitors, [...] Read more.
Additives such as surfactants (Tween-20) and cryoprotectants (glycerol and trehalose) are often used in enzymatic assays to improve the quality and long-term stabilization of proteins. However, these additives can affect the enzymatic activity and the enzyme’s affinity for active compounds, such as inhibitors, and must be considered during assay design since a slight shift in enzyme behavior may compromise the reliability of the results. In this study, the effects of Tween-20, glycerol, and trehalose on hyaluronidase (Hyal) were systematically evaluated by assessing their influence both directly—through microscale thermophoresis (MST) signals of the labeled enzyme (Hyal*)—and indirectly, by monitoring the formation of the final product of the degradation of hyaluronic acid, tetrasaccharide (Tet), using capillary electrophoresis (CE/UV). Hyal was labeled for the first time with ATTO-647 NHS ester, a commercial dye compatible with MST. Efficient labeling was achieved in a phosphate-based buffer without loss of catalytic activity. Tween-20 showed no impact on MST signals nor on enzymatic performance when used between 0.005 and 0.05% (v/v). Glycerol also did not interfere with MST measurements; however, it significantly reduced catalytic activity at concentrations above 2% (v/v). Trehalose affected Hyal* fluorescence in a concentration-dependent manner and enhanced catalytic activity even at 0.02% (v/v). Full article
(This article belongs to the Special Issue Peptide and Protein-Based Materials: Technology and Applications)
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18 pages, 2871 KB  
Article
Staphylococcal Enterotoxin M Exhibits Thrombin-like Enzymatic Activity
by Qian Huang, Shuang-Hua Luo, Wan-Fan Tian, Jun-Ni Tang and Ji Liu
Biomolecules 2025, 15(10), 1357; https://doi.org/10.3390/biom15101357 - 24 Sep 2025
Viewed by 902
Abstract
To express and purify staphylococcal enterotoxin M (SEM) using immobilized metal affinity chromatography (IMAC), a signal peptide-truncated (ΔNsp) wild-type SEM (SEMWT) was N-terminally fused in pET-28a(+) to a polyhistidine tag (His-) and thrombin cleavage site (TCS; LVPR↓GS), generating His [...] Read more.
To express and purify staphylococcal enterotoxin M (SEM) using immobilized metal affinity chromatography (IMAC), a signal peptide-truncated (ΔNsp) wild-type SEM (SEMWT) was N-terminally fused in pET-28a(+) to a polyhistidine tag (His-) and thrombin cleavage site (TCS; LVPR↓GS), generating His-TCS-ΔNspSEMWT. Unexpectedly, 4 °C desalting reduced the fusion protein’s molecular weight by ~2.0 kDa on sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). N-terminal sequencing and mass spectrometry identified cleavage specifically at the arginine (R) and glycine (G) peptide bond (R–G bond) within the TCS motif. AlphaFold 3 revealed an exposed serine protease catalytic triad: histidine 172, serine 178, and aspartic acid 212 (H172/S178/D212) in the β-grasp domain, suggesting intrinsic thrombin-like activity (TLA). Sequential IMAC and size-exclusion high-performance liquid chromatography (SE-HPLC) purification eliminated contaminant concerns, while chromogenic substrate S-2238 (S-2238) assays demonstrated increasing specific activity and purification fold, supporting intrinsic TLA. Critically, the mutation of serine at position 178 to alanine (His-TCS-ΔNspSEMS178A) abolished TLA but preserved the secondary/tertiary structure, confirming the activity’s origin within the wild-type construct. Molecular dynamics (MD) simulations probed the atomistic mechanism for specific R–G bond cleavage. This work establishes a foundation for understanding ΔNspSEMWT’s TLA. Full article
(This article belongs to the Section Enzymology)
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20 pages, 1185 KB  
Communication
Anti-Aging Potential of Bioactive Peptides Derived from Casein Hydrolyzed with Kiwi Actinidin: Integration of In Silico and In Vitro Study
by Nicolas Caicedo, Lady L. Gamboa, Yhors Ciro, Constain H. Salamanca and Jose Oñate-Garzón
Cosmetics 2025, 12(5), 189; https://doi.org/10.3390/cosmetics12050189 - 1 Sep 2025
Cited by 1 | Viewed by 3550
Abstract
Background: Skin aging is mainly associated with oxidative stress and enzymatic degradation of collagen and elastin by protease activity. Peptides have antioxidant capacity and inhibitory effects on protease enzymes. Objective: The purpose of this study was to obtain peptides with in vitro anti-aging [...] Read more.
Background: Skin aging is mainly associated with oxidative stress and enzymatic degradation of collagen and elastin by protease activity. Peptides have antioxidant capacity and inhibitory effects on protease enzymes. Objective: The purpose of this study was to obtain peptides with in vitro anti-aging activity from the enzymatic hydrolysis of bovine casein with actinidin, a protease extracted from the green kiwi fruit (Actinidia deliciosa) Methodology: The enzyme actinidin was extracted from the pulp of the kiwi fruit, purified by ion exchange chromatography and characterized by polyacrylamide electrophoresis (SDS-PAGE). Subsequently, the extracted enzyme was used to hydrolyze commercial bovine casein at 37 °C for 30 min, precipitating the peptide fraction with trichloroacetic acid (TCA), and centrifuged. To determine the anti-aging potential of the peptides in vitro, antioxidant activity was evaluated using the ABTS (2,2′-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid)) radical. Additionally, the inhibitory capacity of the peptides against collagenase and elastase enzymes was also studied. To complement the in vitro results, the enzymatic hydrolysis of casein with actinidin was simulated. The binding energy (ΔG) of each of the hydrolysates with the collagenase and elastase enzymes was calculated using molecular docking to predict the peptide sequences with the highest probability of interaction. Results: Actinidin was extracted and purified exhibiting a molecular weight close to 27 kDa. The enzyme hydrolyzed the substrate by 91.6%, and the resulting hydrolysates showed moderate in vitro anti-aging activity: antioxidant (17.5%), anticollagenase (18.55%), and antielastase (28.6%). In silico results revealed 66 peptide sequences of which 30.3% consisted of 4–8 amino acids, a suitable size to facilitate interaction with structural targets. The sequences with the highest affinity were FALPQYLK and VIPYVRYL for collagenase and elastase, respectively. Conclusions: Despite the modest inhibition values, the use of a fruit-derived enzyme and a food-grade substrate is in line with current trends in sustainable and natural cosmetics. These findings highlight the great potential for laying the groundwork for future research into actinidin-derived peptides as multifunctional and eco-conscious ingredients for the development of next-generation anti-aging formulations. Full article
(This article belongs to the Special Issue Functional Molecules as Novel Cosmetic Ingredients)
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15 pages, 4180 KB  
Article
BOL Lectin: A Protein Derived from Cauliflower Exhibits Antibiofilm Activity in In Vitro Assays Against Staphylococcus aureus
by Leandro Augusto Mariano Silva, Natália Pereira, Mareliza Possa de Menezes, Romário Alves Rodrigues, Milena Souza Reis, Giordano Eugenio Oliveira, Hugo Leandro dos Santos, Lucas José Luduverio Pizauro, Ana Karen de Mendonça Ludgero, Christiane Eliza Motta Duarte, Leandro Licursi de Oliveira, Caio Roberto Soares Bragança and Marita Vedovelli Cardozo
Microorganisms 2025, 13(8), 1901; https://doi.org/10.3390/microorganisms13081901 - 15 Aug 2025
Viewed by 1320
Abstract
The BOL lectin, a 34 kDa protein with a hemagglutination titer of 64 hemagglutination units (HU), was extracted from cauliflower (Brassica oleracea spp. botrytis L.), purified by affinity and ion exchange chromatography, and confirmed, in this study, by Sodium Dodecyl Sulfate-Polyacrylamide Gel [...] Read more.
The BOL lectin, a 34 kDa protein with a hemagglutination titer of 64 hemagglutination units (HU), was extracted from cauliflower (Brassica oleracea spp. botrytis L.), purified by affinity and ion exchange chromatography, and confirmed, in this study, by Sodium Dodecyl Sulfate-Polyacrylamide Gel Electrophoresis (SDS-PAGE). The antibiofilm activity of BOL was evaluated at two concentrations (0.1 mg/mL and 1.0 mg/mL) against bacterial strains of importance to human health (Bacillus cereus ATCC 10876, Escherichia coli ATCC 25922, Staphylococcus aureus ATCC 29213, and Streptococcus agalactiae ATCC 12403). In addition to a biofilm formation assay, a pre-formed biofilm assay was conducted, with biofilm structure analyzed by Scanning Electron Microscopy (SEM). The antimicrobial potential of BOL was also investigated using the Minimum Inhibitory Concentration (MIC) assay in 96-well microplates. Among the tested bacterial strains, BOL exhibited activity against S. aureus at 1.0 mg/mL, interfering with both biofilm formation and disrupting pre-formed biofilms, which may be explained by a possible interaction between BOL and the components present in the biofilm matrix. However, no antibiofilm activity was observed against E. coli, B. cereus, or S. agalactiae, possibly due to differences in the composition of their biofilm matrices. Furthermore, BOL showed no detectable bactericidal or bacteriostatic activity in the antimicrobial assays. In conclusion, BOL lectin, at the tested concentrations, does not exhibit direct antimicrobial activity but effectively disrupts the extracellular matrix in S. aureus ATCC 29213. Full article
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32 pages, 10757 KB  
Review
Advancements in SELEX Technology for Aptamers and Emerging Applications in Therapeutics and Drug Delivery
by Liangjie Feng, Yu Sun, Wenshen Jia, Yang Yu, Chang Liu, Jing Yang, Yunxia Luan, Jin Chen and Fengchao Wang
Biomolecules 2025, 15(6), 818; https://doi.org/10.3390/biom15060818 - 5 Jun 2025
Cited by 26 | Viewed by 7334
Abstract
Nucleic acid aptamers, selected through the Systematic Evolution of Ligands by Exponential Enrichment (SELEX), are short nucleic acid sequences that exhibit high affinity and specificity towards diverse targets. Over the past three decades, substantial advancements have been made in both the technology and [...] Read more.
Nucleic acid aptamers, selected through the Systematic Evolution of Ligands by Exponential Enrichment (SELEX), are short nucleic acid sequences that exhibit high affinity and specificity towards diverse targets. Over the past three decades, substantial advancements have been made in both the technology and applications of nucleic acid aptamers. This review provides an in-depth analysis of the historical development and defining characteristics of aptamers, highlighting recent technological innovations in SELEX, including Capillary Electrophoresis SELEX, Microfluidic SELEX, Cell-SELEX, and others. We explore the applications of aptamers in therapeutic and targeted drug delivery, emphasizing their advantages over traditional antibodies such as cost-effectiveness, ease of synthesis, and lower immunogenicity. Key challenges such as stability, specificity, and efficient delivery are discussed, with proposed strategies for improvement including advanced chemical modifications and integration with nanotechnology. By integrating advanced technologies, aptamers hold significant promise for enhancing precision medicine and personalized therapeutic interventions, offering new avenues for the treatment of complex diseases. Full article
(This article belongs to the Section Biomacromolecules: Proteins, Nucleic Acids and Carbohydrates)
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Article
Biophysical Characterization of Shrimp Hemocyanins: Stability and Emerging Biotechnological Applications
by Lierge Ramos, Claudemir O. Souza, Ísis Sebastião, Giovana Bertini, Francisco Adriano de Oliveira Carvalho, Regildo Márcio Gonçalves da Silva, Edson Miguel Vilanculo, Julianne Soares Pereira and Patrícia Soares Santiago
Biomolecules 2025, 15(5), 675; https://doi.org/10.3390/biom15050675 - 6 May 2025
Cited by 3 | Viewed by 2411
Abstract
Hemocyanins are oxygen-transporting proteins found in crustaceans and other arthropods, playing key roles in immune defense and metabolic regulation. Due to their stability and bioactive properties, Hcs have gained increasing interest in biotechnological and biomedical applications. However, detailed biophysical characterization is crucial to [...] Read more.
Hemocyanins are oxygen-transporting proteins found in crustaceans and other arthropods, playing key roles in immune defense and metabolic regulation. Due to their stability and bioactive properties, Hcs have gained increasing interest in biotechnological and biomedical applications. However, detailed biophysical characterization is crucial to understanding their functional potential. In this study, the hemocyanin was extracted and purified from Macrobrachium acanthurus (HcMac) using ultracentrifugation and size-exclusion chromatography. The molecular mass of HcMac was determined by SDS-PAGE electrophoresis, MALDI-TOF mass spectrometry, and analytical ultracentrifugation. Spectroscopic analyses, including UV-Vis absorption, fluorescence emission, and light scattering intensity, were used to assess the structural stability of the compound under various pH conditions. HcMac was identified as a hexameric protein (~450 kDa) composed of monomeric subunits of 75 and 76 kDa. The protein maintained its oligomeric stability and oxygen-binding affinity in the pH range of 5.0–7.4. However, extreme pH conditions (below 4.4 and above 7.5) induced structural alterations, leading to dissociation and conformational changes, as evidenced by fluorescence emission and UV-Vis spectra. The isoelectric point was determined to be between pH 4.3 and 5.3, consistent with other crustacean HCs. These findings reinforce the structural robustness of HcMac and suggest its potential for biotechnological applications. The high stability of HcMac under physiological pH conditions indicates its suitability for biomedical research, including immunomodulatory and antimicrobial applications. Future studies integrating bioinformatics, proteomics, and immunological assays will be essential to explore the therapeutic potential of HcMac. Full article
(This article belongs to the Section Chemical Biology)
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