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19 pages, 814 KB  
Article
Dietary Lactobacillus plantarum Supplementation Improves Growth Performance and Antioxidant Status and Upregulates Genes Related to the Toll/Imd and JAK-STAT Signaling Pathways in Red Claw Crayfish (Cherax quadricarinatus)
by Qin Zhang, Chongyang Du, Jiahao Zhao, Luoqing Li, Jianhang Ren, Tong Tong, Dapeng Wang, Rui Wang, Yongqiang Liu and Huizan Yang
Animals 2026, 16(7), 1090; https://doi.org/10.3390/ani16071090 - 2 Apr 2026
Viewed by 316
Abstract
This study conducted a 70-day feeding trial to evaluate the effects of dietary Lactobacillus plantarum supplementation (0, 0.1, 1.0, and 10.0 g/kg) in red claw crayfish (Cherax quadricarinatus). Growth performance, hepatopancreatic antioxidant-related parameters, and the expression of genes related to the [...] Read more.
This study conducted a 70-day feeding trial to evaluate the effects of dietary Lactobacillus plantarum supplementation (0, 0.1, 1.0, and 10.0 g/kg) in red claw crayfish (Cherax quadricarinatus). Growth performance, hepatopancreatic antioxidant-related parameters, and the expression of genes related to the Toll/Imd and JAK-STAT pathways were determined. Results showed that dietary L. plantarum supplementation significantly improved weight gain rate, specific growth rate, daily growth index, and feed efficiency, which were increased by 23.57%, 5.10%, 9.67%, and 7.90%, respectively, and reduced mortality rate by 60.00% compared with the control group (p < 0.05), enhanced the activities of glutathione peroxidase, catalase, superoxide dismutase and total antioxidant capacity, and reduced malondialdehyde levels in the hepatopancreas (p < 0.05). Furthermore, dietary L. plantarum supplementation was associated with the upregulated expression of key genes related to the Toll/Imd and JAK-STAT signaling pathways (p < 0.05). The expression levels of tumor necrosis factor-α, interleukin-1β, and transforming growth factor-β1 were also significantly increased (p < 0.05). Overall, these findings suggest that dietary L. plantarum supplementation improved growth performance and antioxidant-related and immune-related parameters in red claw crayfish, and that these effects were associated with the upregulated expression of genes involved in the Toll/Imd and JAK-STAT pathways. Among the tested treatments, 1.0 g/kg L. plantarum produced the most favorable overall response. Full article
(This article belongs to the Special Issue Applications of Probiotics in Aquaculture)
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12 pages, 1377 KB  
Article
Evaluation of mTOR, NFκB and BCL-2 Inhibitor Activity In Vitro in Karpas 1106P, a Primary Mediastinal B-Cell Lymphoma Cell Line
by Agata Majchrzak, Sylwia Mańka, Barbara Cebula-Obrzut, Paweł Robak, Damian Mikulski and Magdalena Witkowska
Hematol. Rep. 2026, 18(2), 25; https://doi.org/10.3390/hematolrep18020025 - 24 Mar 2026
Viewed by 254
Abstract
Introduction: PMBCL is an aggressive type of lymphoma characterized by high heterogeneity in clinical, molecular, and genetic features. In PMBCL, disturbances in the NFkB pathway and deregulation of BCL-2 and mTOR family proteins are observed, which may contribute to impaired apoptosis. Therefore, [...] Read more.
Introduction: PMBCL is an aggressive type of lymphoma characterized by high heterogeneity in clinical, molecular, and genetic features. In PMBCL, disturbances in the NFkB pathway and deregulation of BCL-2 and mTOR family proteins are observed, which may contribute to impaired apoptosis. Therefore, many strategies have been established to target the functioning of these pathways. Early clinical trials of mTOR, NFkB and Bcl-2 inhibitors suggest their activity in many hematological cancers, but their activity as monotherapy agents may still be insufficient; therefore, combinations of these compounds with other molecules acting on those active in a given cancer subtype are being sought. Materials and Methods: In vitro studies were conducted on a single PMBCL cell line, Karpas 1106P. We administered three novel drugs: AZD2014 (vistusertib), an inhibitor of the serine-threonine kinase mTOR; IMD-0354, an NFκB inhibitor; and ABT-199 (venetoclax), a highly selective inhibitor for BCL-2. Drugs were administered alone, in pairs and in combination of all three agents. Results: Based on the results of our own research, for the Karpas cell line individually, ABT-199 had the strongest pro-apoptotic effect on cancer cells, while in pairs the most potent induction of apoptosis occurred following treatment with AZD2014+ABT-199. The combination of three drugs did not have a stronger effect than either a single drug used alone or any two-drug combination. Conclusions: These results provide preliminary in vitro evidence that targeting the BCL-2 and mTOR pathways may enhance pro-apoptotic activity in a PMBCL cell model; however, further validation in additional cell lines and in vivo models is needed before translational implications can be considered. Full article
(This article belongs to the Special Issue Treatment and Prognosis of Hematological Malignancies)
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15 pages, 1458 KB  
Article
Sublethal Broflanilide Exposure Induces Developmental and Reproductive Costs and Early Detoxification Responses in Tuta absoluta
by Binbin Dong, Xiaoqian Yao, Yalan Sun and Chunmeng Huang
Horticulturae 2026, 12(3), 381; https://doi.org/10.3390/horticulturae12030381 - 19 Mar 2026
Viewed by 271
Abstract
The tomato leaf miner, Tuta absoluta (Meyrick) (Lepidoptera: Gelechiidae), poses a significant threat to global tomato production. However, environmentally sustainable management strategies for this pest, as well as its mechanisms of insecticide resistance, remain insufficiently understood. Broflanilide, a novel meta-diamide compound, can bind [...] Read more.
The tomato leaf miner, Tuta absoluta (Meyrick) (Lepidoptera: Gelechiidae), poses a significant threat to global tomato production. However, environmentally sustainable management strategies for this pest, as well as its mechanisms of insecticide resistance, remain insufficiently understood. Broflanilide, a novel meta-diamide compound, can bind specifically to the transmembrane domain of the RDL subunit, causing prolonged opening of the chloride channel, disruption of neurotransmission, and ultimately insect paralysis and death. This study employed the leaf immersion method to conduct bioassays on the second-instar larvae of T. absoluta to evaluate physiological responses to sublethal concentrations of the novel amide insecticide broflanilide. Subsequently, high-throughput transcriptome sequencing was performed to investigate changes in gene expression and metabolic pathways. Bioassay results determined the larval sublethal concentrations of broflanilide to be 0.136 mg/L (LC10) and 0.210 mg/L (LC30). Sublethal exposure significantly prolonged the larval period, reduced pupal weight, and inhibited fecundity of female adults. Transcriptomic and qPCR analyses revealed that, compared with the control (CK), expression of the vitellogenin gene Vg decreased by 15.99% and 30.27% under LC10 and LC30 treatments, respectively, while its receptor gene VgR decreased by 11.56% and 24.49%. Similarly, expression of chitin synthase genes chs1 and chs2 declined by 13.56% and 30.17% (chs1), and 7.85% and 19.45% (chs2), respectively. Gene expression analysis elucidated how sublethal insecticides treatment impact larval development and fecundity. Furthermore, the study revealed upregulation of cytochrome P450-mediated detoxification pathways and Toll/Imd immune signaling pathways under broflanilide stress, indicating activation of a coordinated defense response in T. absoluta. Sublethal broflanilide exposure modulated larval gene expression to balance growth, development, and stress adaptation. Such exposure exerts selective pressure on susceptible populations, potentially driving adaptive shifts in detoxification metabolism and contributing to the development of field resistance. These findings advance our understanding of the sublethal effects of novel insecticides and provide valuable insights for insecticide deployment strategies and resistance management. Full article
(This article belongs to the Section Insect Pest Management)
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10 pages, 1947 KB  
Article
Evaluation of mTOR, NFκB, and BCL-2 Inhibitor Activity In Vitro on Diffuse Large B-Cell Lymphoma Cells
by Agata Majchrzak, Sylwia Mańka, Barbara Cebula-Obrzut, Aleksandra Mędra, Paweł Robak, Damian Mikulski and Magdalena Witkowska
Curr. Issues Mol. Biol. 2026, 48(2), 229; https://doi.org/10.3390/cimb48020229 - 20 Feb 2026
Viewed by 517
Abstract
DLBCLs constitute an aggressive type of lymphoma with varied clinical, molecular and genetic features. The cells are characterized by NFkB pathway disturbances and BCL-2 and mTOR protein deregulation, which significantly inhibit apoptosis. Hence, many treatment strategies have been established to target the functioning [...] Read more.
DLBCLs constitute an aggressive type of lymphoma with varied clinical, molecular and genetic features. The cells are characterized by NFkB pathway disturbances and BCL-2 and mTOR protein deregulation, which significantly inhibit apoptosis. Hence, many treatment strategies have been established to target the functioning of these pathways. While early clinical trials have found mTOR, NFkB and Bcl-2 inhibitors to have activity in many hematological cancers, their activity as monotherapy agents may still be insufficient; therefore, combinations of these compounds with other molecules demonstrating activity in a given cancer subtype are under evaluation. In vitro studies were conducted on the Riva (ABC subtype) and Toledo (GCB subtype) cell lines. Three novel drugs were administered: AZD2014 (vistusertib)—an inhibitor of the serine–threonine kinase mTOR; IMD-0354—an NFκB inhibitor; and ABT-199 (venetoclax)—a highly selective inhibitor for BCL-2. Drugs were administered alone, in pairs and as a combination of all three agents. For the Riva cell line, ABT-199 had the strongest pro-apoptotic effect on cancer cells as monotherapy. As pairs, AZD2014+ABT-199 and ABT-199+IMD0354 demonstrated similar effects. The combination of the three drugs did not have a stronger effect than the drug pairs. For the Toledo cell line, no significant differences were noted between the drugs when used as monotherapy. In pairs, the strongest effect was observed for AZD2014+ABT-199; furthermore, this effect was not intensified by the combination of the three drugs. Our findings, including those for the BCL-2 and mTOR inhibitors, indicate that there is a need for further in vivo studies to evaluate these drugs as potentially effective treatments for DLBCL of the ABC and GCB subtypes. Full article
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23 pages, 1672 KB  
Review
Field-Evolved Resistance to Bt Cry Toxins in Lepidopteran Pests: Insights into Multilayered Regulatory Mechanisms and Next-Generation Management Strategies
by Junfei Xie, Wenfeng He, Min Qiu, Jiaxin Lin, Haoran Shu, Jintao Wang and Leilei Liu
Toxins 2026, 18(2), 60; https://doi.org/10.3390/toxins18020060 - 25 Jan 2026
Viewed by 1178
Abstract
Bt Cry toxins remain the cornerstone of transgenic crop protection against Lepidopteran pests, yet field-evolved resistance, particularly in invasive species such as Spodoptera frugiperda and Helicoverpa armigera, can threaten their long-term efficacy. This review presents a comprehensive and unified mechanistic framework that [...] Read more.
Bt Cry toxins remain the cornerstone of transgenic crop protection against Lepidopteran pests, yet field-evolved resistance, particularly in invasive species such as Spodoptera frugiperda and Helicoverpa armigera, can threaten their long-term efficacy. This review presents a comprehensive and unified mechanistic framework that synthesizes current understanding of Bt Cry toxin modes of action and the complex, multilayered regulatory mechanisms of field-evolved resistance. Beyond the classical pore-formation model, emerging evidence highlights signal transduction cascades, immune evasion via suppression of Toll/IMD pathways, and tripartite toxin–host–microbiota interactions that can dynamically modulate protoxin activation and receptor accessibility. Resistance arises from target-site alterations (e.g., ABCC2/ABCC3, Cadherin mutations), altered midgut protease profiles, enhanced immune regeneration, and microbiota-mediated detoxification, orchestrated by transcription factor networks (GATA, FoxA, FTZ-F1), constitutive MAPK hyperactivation (especially MAP4K4-driven cascades), along with preliminary emerging findings on non-coding RNA involvement. Countermeasures now integrate synergistic Cry/Vip pyramiding, CRISPR/Cas9-validated receptor knockouts revealing functional redundancy, Domain III chimerization (e.g., Cry1A.105), phage-assisted continuous evolution (PACE), and the emerging application of AlphaFold3 for structure-guided rational redesign of resistance-breaking variants. Future sustainability hinges on system-level integration of single-cell transcriptomics, midgut-specific CRISPR screens, microbiome engineering, and AI-accelerated protein design to preempt resistance trajectories and secure Bt biotechnology within integrated resistance and pest management frameworks. Full article
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28 pages, 7955 KB  
Article
Functional Division of Insect Blood Cells by Single-Cell RNA-Sequencing and Cell-Type-Specific FISH Markers
by Falguni Khan, Gahyeon Jin, Mojtaba Esmaeily, Shiva Haraji, Niayesh Shahmohammadi and Yonggyun Kim
Cells 2025, 14(23), 1842; https://doi.org/10.3390/cells14231842 - 22 Nov 2025
Viewed by 1205
Abstract
Hemocytes (insect blood cells) consist of several morphological types and perform a variety of physiological processes, including immune responses. However, we do not know how many cell types are functionally differentiated in hemocytes or how they perform independent physiological processes. To address this [...] Read more.
Hemocytes (insect blood cells) consist of several morphological types and perform a variety of physiological processes, including immune responses. However, we do not know how many cell types are functionally differentiated in hemocytes or how they perform independent physiological processes. To address this fundamental question, we analyzed hemocyte transcripts with a single-cell RNA-sequencing (scRNA-Seq) technique. The hemocytes were collected from larvae of a lepidopteran insect, Spodoptera exigua, in which four different hemocyte types were morphologically recognized. scRNA-Seq discriminated 24 hemocyte clusters based on the transcripts of each cell. The clusters were separated into seven functional groups predicted from the top three highly expressed and annotated genes in each cluster: active protein synthesis (12 clusters), apoptosis (5 clusters), melanization (2 clusters), modulating cell shape (6 clusters), antimicrobial peptide production (9 clusters), calcium homeostasis (8 clusters), and cell repairing (1 cluster). Signal components of Toll/IMD immune pathways were variably expressed among the clusters. Biosynthetic genes associated with oxylipin immune mediators were specifically expressed among the clusters. Immune effectors such as melanization and apoptosis were expressed in specific hemocyte clusters. Specifically expressed genes that discriminate hemocyte types were used to develop fluorescence in situ hybridization (FISH) markers. In addition, five new hemocyte groups, which were not among the four known hemocyte types in the transcript profile, were identified and discriminated with their specific FISH markers. The hemocyte clusters underwent dynamic changes upon immune challenge. A trajectory analysis using the transcriptome suggests at least three different hemocyte differentiation pathways. These results indicate that the hemocytes of S. exigua are functionally highly differentiated and exhibit a dynamic transition in response to environmental changes. Full article
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27 pages, 1712 KB  
Review
Host Immunity Mechanisms Against Bacterial and Viral Infections in Bombyx mori
by Sadaf Ayaz, Wei-Wei Kong, Jie Wang, Shi-Huo Liu and Jia-Ping Xu
Insects 2025, 16(11), 1167; https://doi.org/10.3390/insects16111167 - 15 Nov 2025
Cited by 1 | Viewed by 2182
Abstract
The domesticated silkworm, Bombyx mori, is a highly valued biodiversity and economic asset, acclaimed for its silk production, besides making important contributions to various scientific disciplines. However, the sericulture industry faces ongoing threats from bacterial and viral infections, which severely impact silkworm [...] Read more.
The domesticated silkworm, Bombyx mori, is a highly valued biodiversity and economic asset, acclaimed for its silk production, besides making important contributions to various scientific disciplines. However, the sericulture industry faces ongoing threats from bacterial and viral infections, which severely impact silkworm health and silk yield. This review provides a comprehensive overview of the innate immune response of B. mori against bacterial and viral pathogens, emphasizing the fundamental molecular and cellular defense mechanisms. We explore the humoral and cellular immune response using antimicrobial peptides (AMPs), pattern recognition receptors (PRRs) like peptidoglycan recognition protein (PGRP), and glucan recognition protein (GRP), which activate canonical signaling pathways. The review further highlights the molecular mechanisms underlying the silkworm’s defense against viruses, incorporating RNA interference (RNAi), apoptosis, and distinct signaling pathways such as Toll and Imd, JAK/STAT, and STING. We also discussed the viral suppression strategies and modulation of host metabolism during infection. Furthermore, the review explores the recent use of CRISPR-Cas gene editing to enhance disease resistance, presenting a promising avenue for mitigating pathogen-induced losses in sericulture. By elucidating these mechanisms, the work provides a synthesis that is critical in terms of developing particular interventions and developing more resistant silkworm strains to ensure that the industry of sericulture becomes viable and productive. Full article
(This article belongs to the Special Issue New Insights into Molecular Mechanism of Insect–Virus Interaction)
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26 pages, 1618 KB  
Review
The Gut Microbiota of Drosophila melanogaster: A Model for Host–Microbe Interactions in Metabolism, Immunity, Behavior, and Disease
by Kyu Hong Cho and Song Ok Kang
Microorganisms 2025, 13(11), 2515; https://doi.org/10.3390/microorganisms13112515 - 31 Oct 2025
Cited by 5 | Viewed by 2798
Abstract
The gut microbiota of Drosophila melanogaster offers a simplified yet powerful system to study conserved mechanisms of host–microbe interactions. Unlike the highly complex mammalian gut microbiota, which includes hundreds of species, the fly gut harbors a small and defined community dominated by Lactobacillus [...] Read more.
The gut microbiota of Drosophila melanogaster offers a simplified yet powerful system to study conserved mechanisms of host–microbe interactions. Unlike the highly complex mammalian gut microbiota, which includes hundreds of species, the fly gut harbors a small and defined community dominated by Lactobacillus and Acetobacter. Despite its low diversity, this microbiota exerts profound effects on host physiology. Commensal bacteria modulate nutrient acquisition, regulate insulin/TOR signaling, and buffer dietary imbalances to support metabolic homeostasis and growth. They also influence neural and behavioral traits, including feeding preferences, mating, and aggression, through microbial metabolites and interactions with host signaling pathways. At the immune level, microbial molecules such as peptidoglycan, acetate, uracil, and cyclic dinucleotides activate conserved pathways including Imd, Toll, DUOX, and STING, balancing antimicrobial defense with tolerance to commensals. Dysbiosis disrupts this equilibrium, accelerating aging, impairing tissue repair, and contributing to tumorigenesis. Research in Drosophila demonstrates how a low-diversity microbiota can shape systemic host biology, offering mechanistic insights relevant to human health and disease. Full article
(This article belongs to the Special Issue Gut Microbiome in Homeostasis and Disease, 3rd Edition)
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18 pages, 3841 KB  
Article
Bt Exposure-Induced Death of Dioryctria abietella (Lepidoptera: Pyralidae) Involvement in Alterations of Gene Expression and Enzyme Activity
by Xiaomei Wang, Jiaxing Sun, Ya Xing, Ruting Chen and Defu Chi
Insects 2025, 16(10), 1010; https://doi.org/10.3390/insects16101010 - 28 Sep 2025
Cited by 1 | Viewed by 1048
Abstract
Dioryctria abietella (Lepidoptera: Pyralidae) is a destructive forest pest for coniferous trees. Bacillus thuringiensis has been widely applied in forestry as a biological control agent to control it. However, the mechanisms of Bt-induced mortality in D. abietella, particularly its effects on gene [...] Read more.
Dioryctria abietella (Lepidoptera: Pyralidae) is a destructive forest pest for coniferous trees. Bacillus thuringiensis has been widely applied in forestry as a biological control agent to control it. However, the mechanisms of Bt-induced mortality in D. abietella, particularly its effects on gene expression and enzyme activities, remain unclear. Here, bioassay, enzyme assay, transcriptome sequencing, and gene expression profiling were employed to explore the relationship between the toxin-receptor, defense, and lethal mechanisms of D. abietella after Bt exposure. In a toxicity bioassay, Bacillus thuringiensis galleriae 05041 strain (Bt05041) was the most toxic insecticide to the larvae of D. abietella, with LC50 values of 3.15 × 108 Colony-Forming Units (CFUs) mL−1 at 72 h after treatment. Transcriptome analysis revealed that the gene expression patterns of D. abietella after 8 h of Bt05041 exposure (Bt8) varied considerably from the Bt05041-treated for 2 h group (Bt2). In the Bt2 group, differentially expressed genes were significantly enriched in cellular and bioenergy pathways of lysosome, insulin signaling, cGMP-PKG signaling, etc. Immune-related pathways were activated, namely cAMP, AMPK, MAPK, Rap1, IMD, and Toll pathways. Meanwhile, Bt8 treatment caused metabolic changes in basic substances such as amino acids, glucose, nucleic acids, and fatty acids. Bt05041 exposure activated the activities of defense enzymes and induced gene expression changes in D. abietella larvae. Among them, most Bt-receptor genes had higher expression levels than defense enzyme genes. Overall, these findings reveal a possible mechanism underlying Bt-mediated death in D. abietella larvae. This work provides valuable information in terms of biological control strategies. Full article
(This article belongs to the Section Insect Molecular Biology and Genomics)
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21 pages, 4068 KB  
Article
Integrin β Regulates the Hepatopancreas Antiviral Innate Immune System by Affecting the Expression of Antimicrobial Peptides in Penaeus vannamei
by Bingbing Yang, Li Zhang, Kun Luo, Sheng Luan, Jie Kong, Qiang Fu, Jiawang Cao, Baolong Chen, Ping Dai, Xupeng Li and Xianhong Meng
Int. J. Mol. Sci. 2025, 26(17), 8478; https://doi.org/10.3390/ijms26178478 - 31 Aug 2025
Cited by 1 | Viewed by 1289
Abstract
Penaeus vannamei aquaculture production accounts for the majority of total shrimp aquaculture output, but it has suffered a severe decline in production and economic losses due to WSSV disease. Therefore, elucidating the relationship between the host immune system and pathogens is crucial for [...] Read more.
Penaeus vannamei aquaculture production accounts for the majority of total shrimp aquaculture output, but it has suffered a severe decline in production and economic losses due to WSSV disease. Therefore, elucidating the relationship between the host immune system and pathogens is crucial for shrimp disease prevention and control. Integrins, as receptor-related molecules, have been shown to participate in various physiological functions, including cell migration, organismal development, and the pathogenesis of multiple diseases. However, the regulatory mechanisms of integrin genes in the shrimp immune system remain unclear. This study reports that integrins may regulate the Toll, IMD, and STAT signaling pathways in P. vannamei by influencing Spätzle, TLR, and Domeless, thereby affecting the shrimp’s innate immune system against diseases. Additionally, integrins can inhibit viral entry and replication. Through RNA interference (RNAi) experiments, it was found that knocking down Pv-Integrin β increases the viral load of white spot syndrome virus (WSSV), making shrimp more susceptible to WSSV and giving rise to increasing mortality. Further research indicates that Pv-Integrin β acts as an upstream recognition receptor in the disease resistance immune pathway, influencing other signaling pathway receptors to regulate the innate immune system. Importantly, knocking down Pv-Integrin β upregulates the expression of antimicrobial peptides such as ALF1 and ALF2, but reduces the expression of Crustin1, Crustin2 and prophenoloxidase. In conclusion, this study reveals that Pv-Integrin β regulates the disease resistance immune signaling pathways by affecting the related receptors. Full article
(This article belongs to the Special Issue Molecular Genetics and Genomics of Aquatic Crustaceans)
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16 pages, 7228 KB  
Article
Transcriptomic Analysis of Tachypleus tridentatus Larval Response to Vibrio parahaemolyticus Infection
by Lei Yan, Jinxia Liu, Boyu Chen, Fanxi Gao, Zizhuo Liu, Zhenwen Zhang, Shimiao Li, Yan Zhang, Jiuman Jia, Peng Zhu and Yongyan Liao
Animals 2025, 15(17), 2556; https://doi.org/10.3390/ani15172556 - 30 Aug 2025
Cited by 1 | Viewed by 986
Abstract
Tachypleus tridentatus is a rare and endangered marine organism with considerable scientific and economic value. It has existed on Earth for about 450 million years and its continuation to the present day may be related to its unique immune system. Owing to its [...] Read more.
Tachypleus tridentatus is a rare and endangered marine organism with considerable scientific and economic value. It has existed on Earth for about 450 million years and its continuation to the present day may be related to its unique immune system. Owing to its drastic population decline, diverse technical approaches are required for its recovery, and the development and growth of its larvae are crucial in this context. Vibrio parahaemolyticus is a common marine pathogen that impairs the healthy growth of marine organisms. The peak period of V. parahaemolyticus occurrence is from May to November, which significantly overlaps with the T. tridentatus spawning period from April to September. However, the response mechanisms of juvenile T. tridentatus to V. parahaemolyticus stress remain unknown. Hence, in this study, we aimed to investigate these response mechanisms through acute toxicity assays, histological observations, and transcriptome analysis. The results showed that the 48 h LD50 of V. parahaemolyticus-infected T. tridentatus larvae was determined to be 1.31 × 108 CFU/g. Histological analysis showed that V. parahaemolyticus damaged the larval tissue. In addition, RNA sequencing (RNA-Seq) identified 2347 differentially expressed genes (DEGs; 1440 upregulated and 907 downregulated genes) and 243 enriched signaling pathways. Functional enrichment analysis revealed the enrichment of immunoregulatory pathways, including the Wnt signaling pathway, ECM-receptor interaction, aminoacyl-tRNA biosynthesis, and Toll and Imd signaling pathways. Seventeen DEGs were randomly selected for real-time RT-PCR (RT-qPCR) validation, and their expression patterns were consistent with those obtained via RNA-Seq. The study of the response mechanism of T. tridentatus larvae to V. parahaemolyticus stress provides scientific references for the protection of T. tridentatus habitats and the recovery of its population size. Full article
(This article belongs to the Special Issue Ecotoxicology in Aquatic Animals: 2nd Edition)
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19 pages, 5609 KB  
Article
Effects of Chronic Low-Salinity Stress on Growth, Survival, Antioxidant Capacity, and Gene Expression in Mizuhopecten yessoensis
by Haoran Xiao, Xin Jin, Zitong Wang, Qi Ye, Weiyan Li, Lingshu Han and Jun Ding
Biology 2025, 14(7), 759; https://doi.org/10.3390/biology14070759 - 25 Jun 2025
Cited by 3 | Viewed by 1278
Abstract
Extreme weather events such as heavy rainfall significantly reduce surface salinity in coastal waters, presenting considerable challenges to the aquaculture of Japanese scallops (Mizuhopecten yessoensis) in shallow cage systems. This study investigated the effects of chronic low-salinity stress on the growth [...] Read more.
Extreme weather events such as heavy rainfall significantly reduce surface salinity in coastal waters, presenting considerable challenges to the aquaculture of Japanese scallops (Mizuhopecten yessoensis) in shallow cage systems. This study investigated the effects of chronic low-salinity stress on the growth performance, antioxidant capacity, and gene expression profile of M. yessoensis using a 60-day salinity gradient experiment. S33 represents the control treatment with normal seawater salinity (33‰), while S30, S28, and S26 represent experimental groups with progressively lower salinities of 30‰, 28‰, and 26‰, respectively. A decline in salinity was accompanied by an increase in oxygen consumption. The S26 group exhibited a higher ammonia excretion rate (2.73 μg/g·h) than other groups, indicating intensified nitrogen metabolism. Growth was inhibited under low-salinity conditions. The S33 group exhibited greater weight gain (16.7%) and shell growth (8.4%) compared to the S26 group (11.6% and 6%), which also showed a substantially higher mortality rate (46%) compared to the control (13%). At 28‰, antioxidant enzyme activities (T-AOC, SOD, CAT, POD) were elevated, indicating a moderate level of stress. However, at the lowest salinity (26‰), these indicators decreased, reflecting the exhaustion of the antioxidant systems and indicating that the mollusks’ adaptive capacity had been exceeded, leading to a state of stress fatigue. NAD-MDH activity was elevated in the S26 group, reflecting enhanced aerobic metabolism under stress. Transcriptome analysis revealed 564 differentially expressed genes (DEGs) between the S33 and S26 groups. Functional enrichment analysis indicated that these DEGs were mainly associated with immune and stress response pathways, including NF-κB, TNF, apoptosis, and Toll/Imd signaling. These genes are involved in key metabolic processes, such as alanine, aspartate, and glutamate metabolism. Genes such as GADD45, ATF4, TRAF3, and XBP1 were upregulated, contributing to stress repair and antioxidant responses. Conversely, the expressions of CASP3, IKBKA, BIRC2/3, and LBP were downregulated, potentially mitigating apoptosis and inflammatory responses. These findings suggest that M. yessoensis adapts to chronic low-salinity stress through the activation of antioxidant systems, modulation of immune responses, and suppression of excessive apoptosis. This study provides new insights into the molecular mechanisms underlying salinity adaptation in bivalves and offers valuable references for scallop aquaculture and selective breeding programs. Full article
(This article belongs to the Special Issue Metabolic and Stress Responses in Aquatic Animals)
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19 pages, 6943 KB  
Article
A Comparative Transcriptomic Analysis of miRNAs and Their Target Genes During the Formation of Melanin in Apis mellifera
by Xiangjie Zhu, Yuanmingyue Tian, Mingjie Cao, Chenyu Zhu, Jiaqi Shang, Jiaqi Sun, Yiming Liu, Bingfeng Zhou, Shujing Zhou and Xinjian Xu
Agriculture 2025, 15(9), 992; https://doi.org/10.3390/agriculture15090992 - 3 May 2025
Viewed by 1168
Abstract
Melanin is an important component of the body color of honeybees, and its formation changes with the age of a capped brood of bees. However, up to now, the regulatory mechanism of melanin formation in honeybees remains unclear. To analyze the differential expression [...] Read more.
Melanin is an important component of the body color of honeybees, and its formation changes with the age of a capped brood of bees. However, up to now, the regulatory mechanism of melanin formation in honeybees remains unclear. To analyze the differential expression profile of microRNAs (miRNAs) in worker bees of Apis mellifera and to reveal the regulatory roles of differentially expressed miRNAs (DEmiRNAs) and mRNAs in the formation process of melanin during the capped brood stage, we used sRNA-seq technology and related software to analyze samples from four key developmental stages during the capped brood stage, when body color develops in Apis mellifera, namely, mature larvae (L0), pre-pupae (PP3), early pupae (P6) and mid-pupae (P9). A total of 1291 miRNAs were identified by bioinformatics. Three comparison groups were analyzed: L0 vs. PP3, PP3 vs. P6, and P6 vs. P9. A total of 171, 94, and 19 DEmiRNAs were identified in these groups, respectively, which regulate 1481, 690, and 182 differentially expressed target mRNAs (target DEmRNAs). The functional analysis of target DEmRNAs indicated that DEmiRNAs might regulate the formation of capped brood melanin in honeybees by activating expression changes in key genes in signaling pathways, such as the Wnt signaling pathway, melanogenesis, and the Toll and Imd signaling pathway, through activating miR-315-x, miR-8, ple, yellow family genes, wnt1, etc. Our research provides a theoretical basis for future analysis of the regulatory role of miRNAs in the formation of melanin in honeybees. Full article
(This article belongs to the Section Farm Animal Production)
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26 pages, 2266 KB  
Review
Single Amino Acid Supplementation in Inherited Metabolic Disorders: An Evidence-Based Review of Interventions
by Elvira Verduci, Martina Tosi, Carlo Dionisi Vici and Marco Spada
Genes 2025, 16(5), 502; https://doi.org/10.3390/genes16050502 - 27 Apr 2025
Cited by 2 | Viewed by 3777
Abstract
Background/Objectives: Inherited metabolic disorders (IMDs) are a group of genetic conditions affecting metabolic pathways. The treatment of some IMDs requires the dietary restriction of specific amino acids. IMDs may also necessitate the supplementation of one or more amino acids due to factors such [...] Read more.
Background/Objectives: Inherited metabolic disorders (IMDs) are a group of genetic conditions affecting metabolic pathways. The treatment of some IMDs requires the dietary restriction of specific amino acids. IMDs may also necessitate the supplementation of one or more amino acids due to factors such as reduced dietary intake, impaired synthesis, defective transport or absorption, or increased utilization. This literature review aims to evaluate the most recent evidence regarding amino acid supplementation in IMDs, considering not only the prevention of amino acid deficiency and toxic accumulation but also the competition with other toxic metabolites. Methods: A systematic search strategy was developed and applied to PubMed/Medline and Scopus databases to identify relevant studies. Amino acids were categorized into six groups: branched-chain amino acids, aromatic amino acids, sulfur amino acids, urea cycle amino acids, other essential amino acids, and other non-essential amino acids. Results: A total of 24 rare IMDs were evaluated. A final number of 99 selected articles were assessed based on the Oxford Centre for Evidence-Based Medicine 2011 Levels of Evidence. Although this work represents a preliminary non-systematic review, it highlights the need for further studies and data collection. Conclusions: Future research must establish the plasma amino acid levels that indicate the need for supplementation, specify the appropriate dosages (g/day or mg/kg/day), determine the optimal treatment duration, and, crucially, define the target plasma ranges to be maintained for effective management of IMDs. Full article
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Article
MiRNA Omics Reveal the Mechanisms of the Dual Effects of Selenium Supplementation on the Development of the Silkworm (Bombyx mori)
by Wen-Jie Ge, Fei Hu, Ting-Ting Hong, Kiran Thakur, Shun-Ming Tang, Jian-Guo Zhang and Zhao-Jun Wei
Int. J. Mol. Sci. 2025, 26(7), 3394; https://doi.org/10.3390/ijms26073394 - 4 Apr 2025
Cited by 4 | Viewed by 1246
Abstract
This study explores the dual effects of selenium (Se) supplementation on silkworm development by analyzing miRNA expression profiles of fat bodies in silkworms under different Se concentrations (50 µM and 200 µM). Compared to the control, 84 miRNAs displayed different expression levels in [...] Read more.
This study explores the dual effects of selenium (Se) supplementation on silkworm development by analyzing miRNA expression profiles of fat bodies in silkworms under different Se concentrations (50 µM and 200 µM). Compared to the control, 84 miRNAs displayed different expression levels in the F_50 µM group, with 72 miRNAs up-regulated and 12 down-regulated; 152 miRNAs were differentially expressed in the F_200 µM group, with 124 up-regulated and 28 down-regulated. In the F_50 µM group, the target genes of differentially expressed miRNAs were mainly enriched in Toll and Imd signaling pathways, oxidative phosphorylation, and ribosome biogenesis in eukaryotes; however, mainly oxidative phosphorylation, ribosome biogenesis in eukaryotes, and the spliceosome were enriched in the F_200 µM group. Based on the results of the protein–protein interaction network and miRNA-target network, bmo-miR-2a-1-5p and bmo-miR-317-3p_L-2R+2 were screened as key miRNAs in the F_50 µM group and the F_200 µM group, respectively. The bmo-miR-2a-1-5p mainly targeted 10014128 (DREDD), 100862750 (ATF2), and 101744000 (Tak1) genes, which were enriched in Toll and Imd signaling pathways. The bmo-miR-317-3p_L-2R+2 primarily regulated 101738508 (SF3b) and 101746688 (Prp19) genes, which were in the spliceosome pathway. Thus, our results demonstrated that Se supplementation improved the silkworm development via bmo-miR-2a-1-5p miRNA regulation of the Toll and Imd signaling pathways and inhibited it via bmo-miR-317-3p_L-2R+2 miRNA targeting the spliceosome pathway. Our data revealed that 50 µM Se supplementation could improve silkworm productivity; meanwhile, a 200 µM Se treatment displayed toxic effects, leading to impaired development. Full article
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