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11 pages, 4521 KB  
Article
Structure of Natural Hexacelsian
by Evgeny Galuskin, Irina Galuskina, Maria Książek, Joachim Kusz and Yevgeny Vapnik
Minerals 2026, 16(8), 815; https://doi.org/10.3390/min16080815 - 6 Aug 2026
Viewed by 252
Abstract
For the first time, the structure of natural hexacelsian, BaAl2Si2O8, a polymorph of celsian and paracelsian, has been refined. Hexacelsian was found in rankinite-bearing paralava near Mount Ye’elim in the northern part of the large Hatrurim Complex [...] Read more.
For the first time, the structure of natural hexacelsian, BaAl2Si2O8, a polymorph of celsian and paracelsian, has been refined. Hexacelsian was found in rankinite-bearing paralava near Mount Ye’elim in the northern part of the large Hatrurim Complex pyrometamorphic rock area (Hatrurim Basin) in the Negev Desert, Israel. It associates with Ba-bearing minerals such as barioferrite, walstromite, gurimite and the potentially new mineral BaCa2Mg(SiO4)2, forming small isolated aggregates between the rock-forming minerals. These rock-forming minerals are represented by gehlenite, rankinite, wollastonite and schorlomite. The structure was refined for a hexacelsian grain measuring 0.039 × 0.026 × 0.016 mm with the composition (Ba1.01K0.05Na0.01Ca0.01)Σ1.08(Si1.96Al1.91Fe3+0.11)Σ3.98O8 to R1 = 3%. Natural hexacelsian with P63/mcm symmetry and unit cell parameters of a = 5.2973(4) Å, c = 15.6068(10) Å, γ = 120°, and V = 379.28(6) Å3 is an analogue of synthetic low-temperature α-hexacelsian. The hexacelsian structure (polytype 2H) is formed by double layers of tetrahedra linked by their tops and bases, which are parallel to (001). Each layer is built from hexagonal (ditrigonal) rings of tetrahedra. The tetrahedra in rings with a disordered Al/Si distribution are rotated by approximately 14.5° compared to the position of the tetrahedra in ideal hexagonal rings in the high-temperature γ-hexacelsian. Every second layer in the structure of the studied hexacelsian is rotated through 180°. The hexacelsian crystallised at temperatures above 1100 °C as a disordered, metastable γ-hexacelsian (1H). A decrease in temperature leads to the ordering of O2 sites and the formation of partially ordered α-hexacelsian (2H), which preserves the disordered distribution of Al/Si at the tetrahedra. Some of the γ-hexacelsian grains in paralava were replaced by celsian under high-temperature conditions. Under low-temperature conditions, α-hexacelsian is replaced by cymrite during the zeolitisation of pyrometamorphic rocks of the Hatrurim Complex. Full article
(This article belongs to the Collection New Minerals)
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33 pages, 4031 KB  
Review
Microwave Synthesis of Zeolites and Zeolite-like Materials: Citius! Altius! Fortius!
by Alexander Karavaev, Anna Makova and Leonid Kustov
Catalysts 2026, 16(4), 332; https://doi.org/10.3390/catal16040332 - 5 Apr 2026
Cited by 1 | Viewed by 1842
Abstract
Energy-efficient microwave technologies for the synthesis of zeolites and zeolite-like materials are considered. The use of microwave radiation in the process of material synthesis has a number of advantages, but also some disadvantages in comparison with the traditional hydrothermal synthesis method. The advantages [...] Read more.
Energy-efficient microwave technologies for the synthesis of zeolites and zeolite-like materials are considered. The use of microwave radiation in the process of material synthesis has a number of advantages, but also some disadvantages in comparison with the traditional hydrothermal synthesis method. The advantages and disadvantages of microwave synthesis of zeolites and zeolite-like materials are presented in the review. The use of microwave synthesis makes it possible to significantly reduce synthesis time, reduce energy costs, and obtain particles with a narrow distribution, usually in the nanoscale range (50–500 nm). The groups of zeolites considered include LTA, BEA, MOR, MFI, MEL, FAU, F, P, T, FER, ANA, MTT, ZSM–22, ZSM-48, SOD, SSZ-11, SSZ-13, SSZ-51, SSZ-54, and others. Among the zeolite-like materials synthesized using microwave radiation, mesoporous silicates MCM-41, SBA-15, alumophosphates, and metallaluminophosphates (AlPO-5, AlPO-11, AlPO-18, SAPO-5, SAPO-11, SAPO-34, SAPO-35) are considered. The proposed methods (microwave processing) significantly expand the range of methods for synthesizing new materials. These methods can reduce the synthesis temperature and affect the structure of the resulting materials. The proposed methods increase the likelihood of obtaining new nanomaterials and hybrid materials, as well as improving the properties of existing ones. Full article
(This article belongs to the Special Issue State of the Art and Future Challenges in Zeolite Catalysts)
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17 pages, 6842 KB  
Article
Inside the Framework: Structural Exploration of Mesoporous Silicas MCM-41, SBA-15, and SBA-16
by Agnieszka Karczmarska, Wiktoria Laskowska, Danuta Stróż and Katarzyna Pawlik
Materials 2025, 18(15), 3597; https://doi.org/10.3390/ma18153597 - 31 Jul 2025
Cited by 31 | Viewed by 3640
Abstract
In the rapidly evolving fields of materials science, catalysis, electronics, drug delivery, and environmental remediation, the development of effective substrates for molecular deposition has become increasingly crucial. Ordered mesoporous silica materials have garnered significant attention due to their unique structural properties and exceptional [...] Read more.
In the rapidly evolving fields of materials science, catalysis, electronics, drug delivery, and environmental remediation, the development of effective substrates for molecular deposition has become increasingly crucial. Ordered mesoporous silica materials have garnered significant attention due to their unique structural properties and exceptional potential as substrates for molecular immobilization across these diverse applications. This study compares three mesoporous silica powders: MCM-41, SBA-15, and SBA-16. A multi-technique characterization approach was employed, utilizing low- and wide-angle X-ray diffraction (XRD), nitrogen physisorption, and transmission electron microscopy (TEM) to elucidate the structure–property relationships of these materials. XRD analysis confirmed the amorphous nature of silica frameworks and revealed distinct pore symmetries: a two-dimensional hexagonal (P6mm) structure for MCM-41 and SBA-15, and three-dimensional cubic (Im3¯m) structure for SBA-16. Nitrogen sorption measurements demonstrated significant variations in textural properties, with MCM-41 exhibiting uniform cylindrical mesopores and the highest surface area, SBA-15 displaying hierarchical meso- and microporosity confirmed by NLDFT analysis, and SBA-16 showing a complex 3D interconnected cage-like structure with broad pore size distribution. TEM imaging provided direct visualization of particle morphology and internal pore architecture, enabling estimation of lattice parameters and identification of structural gradients within individual particles. The integration of these complementary techniques proved essential for comprehensive material characterization, particularly for MCM-41, where its small particle size (45–75 nm) contributed to apparent structural inconsistencies between XRD and sorption data. This integrated analytical approach provides valuable insights into the fundamental structure–property relationships governing ordered mesoporous silica materials and demonstrates the necessity of combined characterization strategies for accurate structural determination. Full article
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27 pages, 7308 KB  
Article
PF-06447475 Molecule Attenuates the Neuropathology of Familial Alzheimer’s and Coexistent Parkinson’s Disease Markers in PSEN1 I416T Dopaminergic-like Neurons
by Diana Alejandra Quintero-Espinosa, Carlos Velez-Pardo and Marlene Jimenez-Del-Rio
Molecules 2025, 30(9), 2034; https://doi.org/10.3390/molecules30092034 - 2 May 2025
Viewed by 2033
Abstract
Familial Alzheimer’s disease (FAD) is a complex multifactorial disorder clinically characterized by cognitive impairment and memory loss. Pathologically, FAD is characterized by intracellular accumulation of the protein fragment Aβ42 (iAβ), hyperphosphorylated microtubule-associated protein TAU (p-TAU), and extensive degeneration of basal forebrain cholinergic neurons [...] Read more.
Familial Alzheimer’s disease (FAD) is a complex multifactorial disorder clinically characterized by cognitive impairment and memory loss. Pathologically, FAD is characterized by intracellular accumulation of the protein fragment Aβ42 (iAβ), hyperphosphorylated microtubule-associated protein TAU (p-TAU), and extensive degeneration of basal forebrain cholinergic neurons of the nucleus basalis of Meynert (NbM) and the medial septal nucleus (MSN), mainly caused by mutations in the amyloid precursor protein (APP), presenilin 1 (PSEN1), and PSEN2 gene. Since the dopaminergic system may contribute to FAD symptoms, alterations in the nigro-hippocampal pathway may be associated with cognitive impairment in FAD. Interestingly, p-α-synuclein (p-α-Syn), Aβ, and p-TAU have been found to coexist in vulnerable regions of postmortem AD brains. However, the mechanism by which Aβ, p-TAU, and α-Syn coexist in DAergic neurons in AD brains has not been determined. We generated PSEN1 I416T dopaminergic-like neurons (DALNs) from I416T menstrual stromal cells (MenSCs) in NeuroForsk 2.0 medium for 7 days and then cultured them in minimal culture medium (MCm) for another 4 days. On day 11, DALNs were analyzed for molecular and pathological markers by flow cytometry and fluorescence microscopy. We found that mutant DALNs showed increased accumulation of iAβ as well as increased phosphorylation of TAU at S202/T205 compared to WT DALNs. Thus, mutant DALNs exhibited typical pathological hallmarks of Alzheimer’s disease. Furthermore, PSEN1 I416T DALNs showed concomitant signs of OS as evidenced by the appearance of oxidized sensor protein DJ-1 (i.e., DJ-1C106-SO3) and apoptotic markers TP53, pS63-c-JUN, PUMA, and cleavage caspase 3 (CC3). Notably, these DALNs exhibited PD-associated proteins such as intracellular accumulation of α-Syn (detected as aggregates of pS129-α-Syn) and phosphorylation of LRRK2 kinase at residue S935. In addition, mutant DALNs showed a 17.16- and 6.17-fold decrease in DA-induced Ca2+ flux, compared to WT DALNs. These observations suggest that iAβ and p-TAU, together with p-α-Syn, and p-LRRK2 kinase, may damage DAergic neurons and thereby contribute to the exacerbation of neuropathologic processes in FAD. Remarkably, the LRRK2 inhibitor PF-06447475 (PF-475) significantly reversed PSEN1 I416T-induced neuropathological markers in DAergic neurons. PF-465 inhibitor reduced iAβ, oxDJ-1C106-SO3, and p-TAU. In addition, this inhibitor reduced pS935-LRRK2, pS129-αSYN, pS63-c-JUN, and CC3. We conclude that the observed neuroprotective effects of PF-475 are due to direct inhibition of LRRK2 activity and that the LRRK2 protein is upstream of the molecular cascade of apoptosis and proteinopathy. Our results suggest that PF-475 is an effective neuroprotective agent against endogenous PSEN1 I416T-induced neurotoxicity in DALNs coexisting with Parkinson’s disease markers. Therefore, PF-475 may be of great therapeutic value in FAD. Full article
(This article belongs to the Special Issue Therapeutic Agents for Neurodegenerative Disorders—2nd Edition)
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14 pages, 23408 KB  
Article
In Situ Synthesis of Zr-Doped Mesoporous Silica Based on Zr-Containing Silica Residue and Its High Adsorption Efficiency for Methylene Blue
by Haiou Wang, Weidong Chen, Shufang Yan, Chunxia Guo, Wen Ma and Ao Yang
Coatings 2025, 15(1), 77; https://doi.org/10.3390/coatings15010077 - 13 Jan 2025
Cited by 5 | Viewed by 1817
Abstract
Zr-containing silica residue (ZSR) is an industrial by-product of ZrOCl2 production obtained through an alkali fusion process using zircon sand. In this study, low-cost and efficient Zr-doped mesoporous silica adsorption materials (Zr-MCM-41 and Zr-SBA-15) were prepared in one step via the hydrothermal [...] Read more.
Zr-containing silica residue (ZSR) is an industrial by-product of ZrOCl2 production obtained through an alkali fusion process using zircon sand. In this study, low-cost and efficient Zr-doped mesoporous silica adsorption materials (Zr-MCM-41 and Zr-SBA-15) were prepared in one step via the hydrothermal synthesis method using ZSR as the silicon source for the removal of methylene blue (MB) from dye-contaminated wastewater. The samples were characterized using X-ray fluorescence (XRF) spectroscopy, X-ray diffraction (XRD), scanning electron microscopy (SEM), transmission electron microscopy (TEM), Fourier transform infrared (FT-IR) spectroscopy, thermogravimetry (TG), and N2 adsorption–desorption measurements. The findings indicate that the synthesized Zr-MCM-41 and Zr-SBA-15 possess highly ordered mesoscopic structures with high specific surface areas of 910 and 846 m2/g, large pore volumes of 1.098 and 1.154 cm3/g, and average pore diameters of 4.18 and 5.35 nm, respectively. The results of the adsorption experiments show that the adsorbent has better adsorption properties under alkaline conditions. The adsorption process obeys the pseudo-quadratic kinetic model and the Freundlich adsorption isotherm model, indicating the coexistence of physical and chemisorption processes. The maximum adsorption capacities of Zr-MCM-41 and Zr-SBA-15 are 618.43 and 516.58 mg/g, respectively, as calculated by the Langmuir model (pH = 9, temperature of 25 °C). Compared with mesoporous silica prepared with sodium silicate as the silicon source, Zr-MCM-41 and Zr-SBA-15 have different structural properties and better adsorption properties due to Zr doping. These findings indicate that ZSR is the preferred silicon source for preparing mesoporous silica, and the mesoporous silica prepared using Zr silicon slag is a promising adsorbent and has great application potential in wastewater treatment. Full article
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11 pages, 3808 KB  
Article
Gold Nanoparticle Mesoporous Carbon Composite as Catalyst for Hydrogen Evolution Reaction
by Erik Biehler, Qui Quach and Tarek M. Abdel-Fattah
Molecules 2024, 29(15), 3707; https://doi.org/10.3390/molecules29153707 - 5 Aug 2024
Cited by 2 | Viewed by 2066
Abstract
Increased environmental pollution and the shortage of the current fossil fuel energy supply has increased the demand for eco-friendly energy sources. Hydrogen energy has become a potential solution due to its availability and green combustion byproduct. Hydrogen feedstock materials like sodium borohydride (NaBH [...] Read more.
Increased environmental pollution and the shortage of the current fossil fuel energy supply has increased the demand for eco-friendly energy sources. Hydrogen energy has become a potential solution due to its availability and green combustion byproduct. Hydrogen feedstock materials like sodium borohydride (NaBH4) are promising sources of hydrogen; however, the rate at which the hydrogen is released during its reaction with water is slow and requires a stable catalyst. In this study, gold nanoparticles were deposited onto mesoporous carbon to form a nano-composite catalyst (AuNP-MCM), which was then characterized via transmission electron microscopy (TEM), powder X-ray diffraction (P-XRD), and scanning electron microscopy/energy dispersive X-ray spectroscopy (SEM/EDS). The composite’s catalytic ability in a hydrogen evolution reaction was tested under varying conditions, including NaBH4 concentration, pH, and temperature, and it showed an activation of energy of 30.0 kJ mol−1. It was determined that the optimal reaction conditions include high NaBH4 concentrations, lower pH, and higher temperatures. This catalyst, with its stability and competitively low activation energy, makes it a promising material for hydrogen generation. Full article
(This article belongs to the Special Issue Two-Dimensional Materials: From Synthesis to Applications)
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21 pages, 12007 KB  
Article
The Aberrant Expression of Biomarkers and Risk Prediction for Neoplastic Changes in Barrett’s Esophagus–Dysplasia
by Young Choi, Andrew Bedford and Simcha Pollack
Cancers 2024, 16(13), 2386; https://doi.org/10.3390/cancers16132386 - 28 Jun 2024
Cited by 7 | Viewed by 2996
Abstract
Background: Barrett’s esophagus (BE) is a pre-neoplastic condition associated with an increased risk of esophageal adenocarcinoma (EAC). The accurate diagnosis of BE and grading of dysplasia can help to optimize the management of patients with BE. However, BE may be missed and [...] Read more.
Background: Barrett’s esophagus (BE) is a pre-neoplastic condition associated with an increased risk of esophageal adenocarcinoma (EAC). The accurate diagnosis of BE and grading of dysplasia can help to optimize the management of patients with BE. However, BE may be missed and the accurate grading of dysplasia based on a routine histology has a considerable intra- and interobserver variability. Thus, well-defined biomarker testing remains indispensable. The aim of our study was to identify routinely applicable and relatively specific biomarkers for an accurate diagnosis of BE, as well as determining biomarkers to predict the risk of progression in BE–dysplasia. Methods: Retrospectively, we performed immunohistochemistry to test mucin 2(MUC2), trefoil factor 3 (TFF3), p53, p16, cyclin D1, Ki-67, beta-catenin, and minichromosome maintenance (MCM2) in biopsies. Prospectively, to identify chromosomal alterations, we conducted fluorescent in situ hybridization testing on fresh brush samples collected at the time of endoscopy surveillance. Results: We discovered that MUC2 and TFF3 are specific markers for the diagnosis of BE. Aberrant expression, including the loss and strong overexpression of p53, Ki-67, p16, beta-catenin, cyclin D1, and MCM2, was significantly associated with low-grade dysplasia (LGD), high-grade dysplasia (HGD), and EAC histology, with a relatively high risk of neoplastic changes. Furthermore, the aberrant expressions of p53 and p16 in BE-indefinite dysplasia (IND) progressor cohorts predicted the risk of progression. Conclusions: Assessing the biomarkers would be a suitable adjunct to accurate BE histology diagnoses and improve the accuracy of BE–dysplasia grading, thus reducing interobserver variability, particularly of LGD and risk prediction. Full article
(This article belongs to the Section Cancer Biomarkers)
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12 pages, 2176 KB  
Article
Rapid Antibiotic Adsorption from Water Using MCM-41-Based Material
by Jie Chen, Yao Yang, Yuanyuan Yao, Zhujian Huang, Qiaoling Xu, Liping He and Beini Gong
Water 2023, 15(22), 4027; https://doi.org/10.3390/w15224027 - 20 Nov 2023
Cited by 5 | Viewed by 3256
Abstract
The contamination of antibiotics in the environment has raised serious concerns, impacting both human life and ecosystems. This has led to a growing focus on the development of cost-effective and environmentally friendly adsorbent materials. Mesoporous molecular sieve MCM-41, known for its strong adsorption [...] Read more.
The contamination of antibiotics in the environment has raised serious concerns, impacting both human life and ecosystems. This has led to a growing focus on the development of cost-effective and environmentally friendly adsorbent materials. Mesoporous molecular sieve MCM-41, known for its strong adsorption capacity, low cost, and efficient regenerative properties, holds significant promise for addressing this issue. In this study, we investigated the adsorption behavior of demolded MCM-41 materials in relation to tetracycline, doxycycline, and levofloxacin at different temperatures and pH levels. Our experiments encompassed the adsorption of these three common antibiotics, revealing that a neutral or weakly acidic pH environment promoted adsorption, whereas alkaline conditions hindered it. Utilizing the equilibrium isotherm model, we determined the theoretical maximum adsorption capacities for tetracycline (TC), doxycycline (DOX), and levofloxacin (LFX) as 73.41, 144.83, and 33.67 mg g−1, respectively. These findings underscore the significant potential of MCM-41 in mitigating antibiotic wastewater contamination. Full article
(This article belongs to the Special Issue Water Resources and Sustainable Development)
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25 pages, 7170 KB  
Article
Bedaquiline-Loaded Solid Lipid Nanoparticles Drug Delivery in the Management of Non-Small-Cell Lung Cancer (NSCLC)
by Shehla Nasar Mir Najib Ullah, Obaid Afzal, Abdulmalik Saleh Alfawaz Altamimi, Manal A. Alossaimi, Waleed H Almalki, Abdulaziz Alzahrani, Md. Abul Barkat, Tahani M. Almeleebia, Hanan Alshareef, Eman M. Shorog, Gyas Khan, Tanuja Singh and J. K. Singh
Pharmaceuticals 2023, 16(9), 1309; https://doi.org/10.3390/ph16091309 - 15 Sep 2023
Cited by 14 | Viewed by 3581
Abstract
Non-small-cell lung cancer (NSCLC) mortality and new case rates are both on the rise. Most patients have fewer treatment options accessible due to side effects from drugs and the emergence of drug resistance. Bedaquiline (BQ), a drug licensed by the FDA to treat [...] Read more.
Non-small-cell lung cancer (NSCLC) mortality and new case rates are both on the rise. Most patients have fewer treatment options accessible due to side effects from drugs and the emergence of drug resistance. Bedaquiline (BQ), a drug licensed by the FDA to treat tuberculosis (TB), has demonstrated highly effective anti-cancer properties in the past. However, it is difficult to transport the biological barriers because of their limited solubility in water. Our study developed a UPLC method whose calibration curves showed linearity in the range of 5 ng/mL to 500 ng/mL. The UPLC method was developed with a retention time of 1.42 and high accuracy and precision. Its LOQ and LOD were observed to be 10 ng/mL and 5 ng/mL, respectively, whereas in the formulation, capmul MCM C10, Poloxamer 188, and PL90G were selected as solid lipids, surfactants, and co-surfactants, respectively, in the development of SLN. To combat NSCLC, we developed solid lipid nanoparticles (SLNs) loaded with BQ, whereas BQ suspension is prepared by the trituration method using acacia powder, hydroxypropyl methylcellulose, polyvinyl acrylic acid, and BQ. The developed and optimized BQ-SLN3 has a particle size of 144 nm and a zeta potential of (−) 16.3 mV. whereas BQ-loaded SLN3 has observed entrapment efficiency (EE) and loading capacity (LC) of 92.05% and 13.33%, respectively. Further, BQ-loaded suspension revealed a particle size of 1180 nm, a PDI of 0.25, and a zeta potential of −0.0668. whereas the EE and LC of BQ-loaded suspension were revealed to be 88.89% and 11.43%, respectively. The BQ-SLN3 exhibited insignificant variation in particle size, homogeneous dispersion, zeta potential, EE, and LC and remained stable over 90 days of storage at 25 °C/60% RH, whereas at 40 °C/75% RH, BQ-SLN3 observed significant variation in the above-mentioned parameters and remained unstable over 90 days of storage. Meanwhile, the BQ suspension at both 25 °C (60% RH) and 40 °C (75% RH) was found to be stable up to 90 days. The optimized BQ-SLN3 and BQ-suspension were in vitro gastrointestinally stable at pH 1.2 and 6.8, respectively. The in vitro drug release of BQ-SLN3 showed 98.19% up to 12 h at pH 7.2 whereas BQ suspensions observed only 40% drug release up to 4 h at pH 7.2 and maximum drug release of >99% within 4 h at pH 4.0. The mathematical modeling of BQ-SLN3 followed first-order release kinetics followed by a non-Fickian diffusion mechanism. After 24 to 72 h, the IC50 value of BQ-SLN3 was 3.46-fold lower than that of the BQ suspension, whereas the blank SLN observed cell viability of 98.01% and an IC50 of 120 g/mL at the end of 72 h. The bioavailability and higher biodistribution of BQ-SLN3 in the lung tumor were also shown to be greater than those of the BQ suspension. The effects of BQ-SLN3 on antioxidant enzymes, including MDA, SOD, CAT, GSH, and GR, in the treated group were significantly improved and reached the level nearest to that of the control group of rats over the cancer group of rats and the BQ suspension-treated group of rats. Moreover, the pharmacodynamic activity resulted in greater tumor volume and tumor weight reduction by BQ-SLN3 over the BQ suspension-treated group. As far as we are aware, this is the first research to look at the potential of SLN as a repurposed oral drug delivery, and the results suggest that BQ-loaded SLN3 is a better approach for NSCLC due to its better action potential. Full article
(This article belongs to the Special Issue Self-Assembled Nanoparticles: An Emerging Delivery Platform for Drugs)
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23 pages, 7637 KB  
Article
Novel Molecular Subtyping Scheme Based on In Silico Analysis of Cuproptosis Regulator Gene Patterns Optimizes Survival Prediction and Treatment of Hepatocellular Carcinoma
by Heng Jiang, Hao Chen, Yao Wang and Yeben Qian
J. Clin. Med. 2023, 12(18), 5767; https://doi.org/10.3390/jcm12185767 - 5 Sep 2023
Cited by 10 | Viewed by 3279
Abstract
Background: The liver plays an important role in maintaining copper homeostasis. Copper ion accumulation was elevated in HCC tissue samples. Copper homeostasis is implicated in cancer cell proliferation and angiogenesis. The potential of copper homeostasis as a new theranostic biomarker for molecular imaging [...] Read more.
Background: The liver plays an important role in maintaining copper homeostasis. Copper ion accumulation was elevated in HCC tissue samples. Copper homeostasis is implicated in cancer cell proliferation and angiogenesis. The potential of copper homeostasis as a new theranostic biomarker for molecular imaging and the targeted therapy of HCC has been demonstrated. Recent studies have reported a novel copper-dependent nonapoptotic form of cell death called cuproptosis, strikingly different from other known forms of cell death. The correlation between cuproptosis and hepatocellular carcinoma (HCC) is not fully understood. Materials and Methods: The transcriptomic data of patients with HCC were retrieved from the Cancer Genome Atlas-Liver Hepatocellular Carcinoma (TCGA-LIHC) and were used as a discovery cohort to construct the prognosis model. The gene expression data of patients with HCC retrieved from the International Cancer Genome Consortium (ICGC) and Gene Expression Omnibus (GEO) databases were used as the validation cohort. The Least Absolute Shrinkage and Selection Operator (LASSO) regression analysis was used to construct the prognosis model. A principal component analysis (PCA) was used to evaluate the overall characteristics of cuproptosis regulator genes and obtain the PC1 and PC2 scores. Unsupervised clustering was performed using the ConsensusClusterPlus R package to identify the molecular subtypes of HCC. Cox regression analysis was performed to identify cuproptosis regulator genes that could predict the prognosis of patients with HCC. The receiver operating characteristics curve and Kaplan–Meier survival analysis were used to understand the role of hub genes in predicting the diagnosis and prognosis of patients, as well as the prognosis risk model. A weighted gene co-expression network analysis (WGCNA) was used for screening the cuproptosis subtype-related hub genes. The functional enrichment analysis was performed using Metascape. The ‘glmnet’ R package was used to perform the LASSO regression analysis, and the randomForest algorithm was performed using the ‘randomForest’ R package. The ‘pRRophetic’ R package was used to estimate the anticancer drug sensitivity based on the data retrieved from the Genomics of Drug Sensitivity in Cancer database. The nomogram was constructed using the ‘rms’ R package. Pearson’s correlation analysis was used to analyze the correlations. Results: We constructed a six-gene signature prognosis model and a nomogram to predict the prognosis of patients with HCC. The Kaplan–Meier survival analysis revealed that patients with a high-risk score, which was predicted by the six-gene signature model, had poor prognoses (log-rank test p < 0.001; HR = 1.83). The patients with HCC were grouped into three distinct cuproptosis subtypes (Cu-clusters A, B, and C) based on the expression pattern of cuproptosis regulator genes. The patients in Cu-cluster B had poor prognosis (log-rank test p < 0.001), high genomic instability, and were not sensitive to conventional chemotherapeutic treatment compared to the patients in the other subtypes. Cancer cells in Cu-cluster B exhibited a higher degree of the senescence-associated secretory phenotype (SASP), a marker of cellular senescence. Three representative genes, CDCA8, MCM6, and NCAPG2, were identified in patients in Cu-cluster B using WGCNA and the “randomForest” algorithm. A nomogram was constructed to screen patients in the Cu-cluster B subtype based on three genes: CDCA8, MCM6, and NCAPG2. Conclusion: Publicly available databases and various bioinformatics tools were used to study the heterogeneity of cuproptosis in patients with HCC. Three HCC subtypes were identified, with differences in the survival outcomes, genomic instability, senescence environment, and response to anticancer drugs. Further, three cuproptosis-related genes were identified, which could be used to design personalized therapeutic strategies for HCC. Full article
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13 pages, 865 KB  
Article
Mucormycosis: A 14-Year Retrospective Study from a Tertiary Care Center in Lebanon
by Fatima Allaw, Johnny Zakhour, Sarah B. Nahhal, Karim Koussa, Elio R. Bitar, Anthony Ghanem, Martine Elbejjani and Souha S. Kanj
J. Fungi 2023, 9(8), 824; https://doi.org/10.3390/jof9080824 - 3 Aug 2023
Cited by 9 | Viewed by 3660
Abstract
Mucormycosis (MCM) is a serious invasive fungal disease (IFD) that is associated with high mortality, particularly in immunocompromised patients. A global surge in MCM cases was reported with the COVID-19 pandemic. We analyzed all recorded cases of MCM at the American University of [...] Read more.
Mucormycosis (MCM) is a serious invasive fungal disease (IFD) that is associated with high mortality, particularly in immunocompromised patients. A global surge in MCM cases was reported with the COVID-19 pandemic. We analyzed all recorded cases of MCM at the American University of Beirut Medical Center (AUBMC), a tertiary care center in Lebanon, over 14 years. We aimed to identify the incidence, seasonal variation, clinical characteristics of the patients, and predictors of mortality. We conducted a retrospective chart review between 1 January 2008 and 1 January 2023. All patients with proven or probable MCM were included in the study. Proven or probable MCM was defined by positive histopathology and/or positive cultures. A total of 43 patients were identified as having MCM. Their median age was 53 years, and the majority were males (58.1%). Most of the cases were diagnosed in the autumn season. In total, 67.4% of the patients had hematological malignancies (HMs), and 34.9% had uncontrolled diabetes mellitus (DM). The most common site of involvement was rhino-orbital-cerebral MCM (ROCM) (74%). The annual cases of MCM per 100,000 patient days increased markedly during the years of the COVID-19 pandemic (from 0 to 4.4 cases/100,000 patient days to 7.5 cases/100,000 during 2020 and 2021). Liposomal amphotericin (Ampho) B was used as a first-line agent in most of the patients (86%). The median duration of total in-hospital antifungal therapy was 21 days and 51.2% of the patients received step-down therapy with azoles. Surgical debridement and isolated ROCM were significantly associated with survival (p-value: 0.02 and <0.001, respectively). All-cause mortality was 46.7%, with chronic renal disease being significantly associated with mortality (p-value < 0.05). The incidence of MCM has been increasing at our institution, particularly since the COVID-19 pandemic. Early diagnosis, treatment, and surgical debridement improve patient outcomes and overall survival. Full article
(This article belongs to the Special Issue Young Investigator in Fungal Infections, 2nd Edition)
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13 pages, 5348 KB  
Article
Glucose Oxidase Captured into Electropolymerized p-Coumaric Acid towards the Development of a Glucose Biosensor
by Gabriela Valdés-Ramírez and Laura Galicia
Chemosensors 2023, 11(6), 345; https://doi.org/10.3390/chemosensors11060345 - 14 Jun 2023
Cited by 9 | Viewed by 4103
Abstract
An electrochemical biosensor based on the immobilization of glucose oxidase into an electropolymerized p-coumaric acid membrane on a Pt electrode has been developed and evaluated for glucose detection in the range of 1 to 30 mM. The glucose biosensor exhibits a sensitivity [...] Read more.
An electrochemical biosensor based on the immobilization of glucose oxidase into an electropolymerized p-coumaric acid membrane on a Pt electrode has been developed and evaluated for glucose detection in the range of 1 to 30 mM. The glucose biosensor exhibits a sensitivity of 36.96 mA/mMcm2, a LOD of 0.66 mM, and a LOQ of 2.18 mM. The biosensing membrane was electropolymerized by cyclic voltammetry in 100 mM phosphates pH 7.00 and 3% ethanol containing glucose oxidase and p-coumaric acid. The glucose biosensors’ stability, repeatability, reproducibility, and selectivity were estimated. The biosensing membrane shows permselective properties and antifouling effects. The applicability of the developed glucose biosensor was evaluated in the presence of 20 mg/mL proteins, and any signal associated with biofouling was observed. The glucose biosensors were employed for the determination of the glucose concentration in three commercial beverages. Full article
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13 pages, 2525 KB  
Article
Selective Styrene Oxidation Catalyzed by Phosphate Modified Mesoporous Titanium Silicate
by Rupak Chatterjee, Avik Chowdhury, Sudip Bhattacharjee, Rajaram Bal and Asim Bhaumik
Chemistry 2023, 5(1), 589-601; https://doi.org/10.3390/chemistry5010042 - 10 Mar 2023
Cited by 5 | Viewed by 3713
Abstract
Selective oxidation of organics over an efficient heterogeneous catalyst under mild liquid phase conditions is a very demanding chemical reaction. Herein, we first report the modification of the surface of mesoporous silica MCM-41 material by phosphate for the efficient incorporation of Ti(IV) in [...] Read more.
Selective oxidation of organics over an efficient heterogeneous catalyst under mild liquid phase conditions is a very demanding chemical reaction. Herein, we first report the modification of the surface of mesoporous silica MCM-41 material by phosphate for the efficient incorporation of Ti(IV) in the silica framework to obtain highly ordered 2D hexagonal mesoporous material STP-1. STP-1 has been synthesized by using tetraethyl orthosilicate, triethyl phosphate, and titanium isopropoxide as Si, P, and Ti precursors, respectively, in the presence of cationic surfactant cetyltrimethylammonium bromide (CTAB) under hydrothermal conditions. The observed specific surface area and pore volume of STP-1 were 878 m2g−1 and 0.75 ccg−1, respectively. Mesoporous STP-1 has been thoroughly characterized by XRD, FT-IR, Raman spectroscopy, SEM, and TEM analyses. Titanium incorporation (Ti/Si = 0.006) was confirmed from the EDX analysis. This mesoporous STP-1 was used as a heterogeneous catalyst for the selective oxidation of styrene into benzaldehye in the presence of dilute aqueous H2O2 as an oxidizing agent. Various reaction parameters such as the reaction time, the reaction temperature, and the styrene/H2O2 molar ratio were systematically studied in this article. Under optimized reaction conditions, the selectivity of benzaldehyde could reach up to 93.8% from styrene over STP-1. Further, the importance of both titanium and phosphate in the synthesis of STP-1 for selective styrene oxidation was examined by comparing the catalytic result with only a phosphate-modified mesoporous silica material, and it suggests that both titanium and phosphate synergistically play an important role in the high selectivity of benzaldehyde in the liquid phase oxidation of styrene. Full article
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24 pages, 9131 KB  
Article
Identifying Genes Associated with Female Flower Development of Phellodendron amurense Rupr. Using a Transcriptomics Approach
by Lihong He, Yongfang Fan, Zhao Zhang, Xueping Wei and Jing Yu
Genes 2023, 14(3), 661; https://doi.org/10.3390/genes14030661 - 6 Mar 2023
Cited by 8 | Viewed by 4406
Abstract
Phellodendron amurense Rupr., a species of Rutaceae, is a nationally protected and valuable medicinal plant. It is generally considered to be dioecious. With the discovery of monoecious P. amurense, the phenomenon that its sex development is regulated by epigenetics has been revealed, [...] Read more.
Phellodendron amurense Rupr., a species of Rutaceae, is a nationally protected and valuable medicinal plant. It is generally considered to be dioecious. With the discovery of monoecious P. amurense, the phenomenon that its sex development is regulated by epigenetics has been revealed, but the way epigenetics affects the sex differentiation of P. amurense is still unclear. In this study, we investigated the effect of DNA methylation on the sexual development of P. amurense. The young inflorescences of male plants were treated with the demethylation agent 5-azaC, and the induced female flowers were obtained. The induced female flowers’ morphological functions and transcriptome levels were close to those of normally developed plants. Genes associated with the development of female flowers were studied by comparing the differences in transcriptome levels between the male and female flowers. Referring to sex-related genes reported in other plants, 188 candidate genes related to the development of female flowers were obtained, including sex-regulating genes, genes related to the formation and development of sexual organs, genes related to biochemical pathways, and hormone-related genes. RPP0W, PAL3, MCM2, MCM6, SUP, PIN1, AINTEGUMENTA, AINTEGUMENTA-LIKE6, AGL11, SEUSS, SHI-RELATED SEQUENCE 5, and ESR2 were preliminarily considered the key genes for female flower development. This study has demonstrated that epigenetics was involved in the sex regulation of P. amurense, with DNA methylation as one of its regulatory modes. Moreover, some candidate genes related to the sexual differentiation of P. amurense were obtained with analysis. These results are of great significance for further exploring the mechanism of sex differentiation of P. amurense and studying of sex differentiation of plants. Full article
(This article belongs to the Special Issue Genetics and Transcriptomics of Medicinal Plants)
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10 pages, 3337 KB  
Article
The Role of MCM9 in the Etiology of Sertoli Cell-Only Syndrome and Premature Ovarian Insufficiency
by Iulia Potorac, Marie Laterre, Olivier Malaise, Vlad Nechifor, Corinne Fasquelle, Orphal Colleye, Nancy Detrembleur, Hannah Verdin, Sofie Symoens, Elfride De Baere, Adrian F. Daly, Vincent Bours, Patrick Pétrossians and Axelle Pintiaux
J. Clin. Med. 2023, 12(3), 990; https://doi.org/10.3390/jcm12030990 - 28 Jan 2023
Cited by 8 | Viewed by 3553
Abstract
Infertility in couples is a common problem, with both female and male factors contributing to similar extents. Severe, congenital disorders affecting fertility are, however, rare. While folliculogenesis and spermatogenesis are generally orchestrated via different mechanisms, some genetic anomalies can impair both female and [...] Read more.
Infertility in couples is a common problem, with both female and male factors contributing to similar extents. Severe, congenital disorders affecting fertility are, however, rare. While folliculogenesis and spermatogenesis are generally orchestrated via different mechanisms, some genetic anomalies can impair both female and male gametogenesis. Minichromosome maintenance complex component 9 (MCM9) is involved in DNA repair and mutations of the MCM9 gene have been previously reported in females with premature ovarian insufficiency (POI). MCM9 is also an emerging cancer risk gene. We performed next-generation and Sanger sequencing of fertility and related genes and hormonal and imaging studies in a kindred whose members had POI and disordered spermatogenesis. We identified a homozygous pathogenic MCM9 variant, c.394C>T (p.Arg132*) in three sisters affected by POI due to ovarian dysgenesis and their brother who had normal pubertal development but suffered from non-obstructive azoospermia. Testicular biopsy revealed Sertoli cell-only testicular histopathology. No evidence of early onset cancer was found in the homozygotic family members, but they were all young (<30 years) at the time of the study. In the male patient the homozygous MCM9 variant led to normal pubertal development and hormonal levels but caused a Sertoli-cell-only syndrome with non-obstructive azoospermia. In the homozygous females studied, the clinical, hormonal, and gonadal phenotypes revealed ovarian dysgenesis consistent with previous reports. Active screening for potential colorectal and other cancer risks in the homozygotic MCM9 subjects has been instigated. Full article
(This article belongs to the Section Endocrinology & Metabolism)
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