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Search Results (4,215)

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Authors = Qin Zhang ORCID = 0000-0002-6121-6513

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24 pages, 3156 KiB  
Article
Study on Gel–Resin Composite for Losting Circulation Control to Improve Plugging Effect in Fracture Formation
by Jinzhi Zhu, Tao Wang, Shaojun Zhang, Yingrui Bai, Guochuan Qin and Jingbin Yang
Gels 2025, 11(8), 617; https://doi.org/10.3390/gels11080617 (registering DOI) - 7 Aug 2025
Abstract
Lost circulation, a prevalent challenge in drilling engineering, poses significant risks including drilling fluid loss, wellbore instability, and environmental contamination. Conventional plugging materials often exhibit an inadequate performance under high-temperature, high-pressure (HTHP), and complex formation conditions. To address that, this study developed a [...] Read more.
Lost circulation, a prevalent challenge in drilling engineering, poses significant risks including drilling fluid loss, wellbore instability, and environmental contamination. Conventional plugging materials often exhibit an inadequate performance under high-temperature, high-pressure (HTHP), and complex formation conditions. To address that, this study developed a high-performance gel–resin composite plugging material resistant to HTHP environments. By optimizing the formulation of bisphenol-A epoxy resin (20%), hexamethylenetetramine (3%), and hydroxyethyl cellulose (1%), and incorporating fillers such as nano-silica and walnut shell particles, a controllable high-strength plugging system was constructed. Fourier-transform infrared spectroscopy (FTIR) and thermogravimetric analysis (TGA) confirmed the structural stability of the resin, with an initial decomposition temperature of 220 °C and a compressive strength retention of 14.4 MPa after 45 days of aging at 140 °C. Rheological tests revealed shear-thinning behavior (initial viscosity: 300–350 mPa·s), with viscosity increasing marginally to 51 mPa·s after 10 h of stirring at ambient temperature, demonstrating superior pumpability. Experimental results indicated excellent adaptability of the system to drilling fluid contamination (compressive strength: 5.04 MPa at 20% dosage), high salinity (formation water salinity: 166.5 g/L), and elevated temperatures (140 °C). In pressure-bearing plugging tests, the resin achieved a breakthrough pressure of 15.19 MPa in wedge-shaped fractures (inlet: 7 mm/outlet: 5 mm) and a sand-packed tube sealing pressure of 11.25 MPa. Acid solubility tests further demonstrated outstanding degradability, with a 97.69% degradation rate after 24 h in 15% hydrochloric acid at 140 °C. This study provides an efficient, stable, and environmentally friendly solution for mitigating drilling fluid loss in complex formations, exhibiting significant potential for engineering applications. Full article
(This article belongs to the Special Issue Gels for Oil and Gas Industry Applications (3rd Edition))
20 pages, 8429 KiB  
Article
Altitude and Temperature Drive Spatial and Temporal Changes in Vegetation Cover on the Eastern Tibetan Plateau
by Yu Feng, Hongjin Zhu, Xiaojuan Zhang, Feilong Qin, Peng Ye, Pengtao Niu, Xueman Wang and Songlin Shi
Earth 2025, 6(3), 92; https://doi.org/10.3390/earth6030092 - 6 Aug 2025
Abstract
The Tibetan Plateau (TP) is experiencing higher warming rates than elsewhere, which may affect regional vegetation growth. Particularly on the Eastern Tibetan Plateau (ETP), where the topography is diverse and rich in biodiversity, it is necessary to clarify the drivers of climate and [...] Read more.
The Tibetan Plateau (TP) is experiencing higher warming rates than elsewhere, which may affect regional vegetation growth. Particularly on the Eastern Tibetan Plateau (ETP), where the topography is diverse and rich in biodiversity, it is necessary to clarify the drivers of climate and topography on vegetation cover. In this research, we selected the Shaluli Mountains (SLLM) in the ETP as the study area, monitored the spatial and temporal dynamics of the regional vegetation cover using remote sensing methods, and quantified the drivers of vegetation change using Geodetector (GD). The results showed a decreasing trend in annual precipitation (PRE) (−2.4054 mm/year) and the Palmer Drought Severity Index (PDSI) (−0.1813/year) in the SLLM. Annual maximum temperature (TMX) on the spatial and temporal scales showed an overall increasing trend, and the regional climate tended to become warmer and drier. Since 2000, fractional vegetation cover (FVC) has shown a fluctuating upward trend, with an average value of 0.6710, and FVC has spatially shown a pattern of “low in the middle and high in the surroundings”. The areas with non-significant increases (p > 0.05) and significant increases (p < 0.05) in FVC accounted for 46.03% and 5.76% of the SLLM. Altitude (q = 0.3517) and TMX (q = 0.3158) were the main drivers of FVC changes. As altitude and TMX increased, FVC showed a trend of increasing and then decreasing. The results of this study help us to clarify the influence of climate and topography on the vegetation ecosystem of the ETP and provide a scientific basis for regional biodiversity conservation and sustainable development. Full article
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15 pages, 1967 KiB  
Article
Extension Distance-Driven K-Means: A Novel Clustering Framework for Fan-Shaped Data Distributions
by Xingsen Li, Hanqi Yue, Yaocong Qin and Haolan Zhang
Mathematics 2025, 13(15), 2525; https://doi.org/10.3390/math13152525 - 6 Aug 2025
Abstract
The K-means algorithm utilizes the Euclidean distance metric to quantify the similarity between data points and clusters, with the fundamental objective of assessing the relationship between points. It is important to note that, during the process of clustering, the relationships between the remaining [...] Read more.
The K-means algorithm utilizes the Euclidean distance metric to quantify the similarity between data points and clusters, with the fundamental objective of assessing the relationship between points. It is important to note that, during the process of clustering, the relationships between the remaining points in the cluster and the points to be measured are ignored. In consideration of the aforementioned issues, this paper proposes the utilization of extension distance for the purpose of evaluating the relationship between the points to be measured and the cluster classes. Furthermore, it introduces a variant of the K-means algorithm based on the separator distance. Through a series of comparative experiments, the effectiveness of the proposed algorithm for clustering fan-shaped datasets is preliminarily verified. Full article
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13 pages, 2344 KiB  
Article
Study on the Risk of Reservoir Wellbore Collapse Throughout the Full Life Cycle of the Qianmiqiao Bridge Carbonate Rock Gas Storage Reservoir
by Yan Yu, Fuchun Tian, Feixiang Qin, Biao Zhang, Shuzhao Guo, Qingqin Cai, Zhao Chi and Chengyun Ma
Processes 2025, 13(8), 2480; https://doi.org/10.3390/pr13082480 - 6 Aug 2025
Abstract
Underground gas storage (UGS) in heterogeneous carbonate reservoirs is crucial for energy security but frequently faces wellbore instability challenges, which traditional static methods struggle to address due to dynamic full life cycle changes. This study systematically analyzes the dynamic evolution of wellbore stress [...] Read more.
Underground gas storage (UGS) in heterogeneous carbonate reservoirs is crucial for energy security but frequently faces wellbore instability challenges, which traditional static methods struggle to address due to dynamic full life cycle changes. This study systematically analyzes the dynamic evolution of wellbore stress in the Bs8 well (Qianmiqiao carbonate UGS) during drilling, acidizing, and injection-production operations, establishing a quantitative risk assessment model based on the Mohr–Coulomb criterion. Results indicate a significantly higher wellbore instability risk during drilling and initial gas injection stages, primarily manifested as shear failure, with greater severity observed in deeper well sections (e.g., 4277 m) due to higher in situ stresses. During acidizing, while the wellbore acid column pressure can reduce principal stress differences, the process also significantly weakens rock strength (e.g., by approximately 30%), inherently increasing the risk of wellbore instability, though the primary collapse mode remains shallow shear breakout. In the injection-production phase, increasing formation pressure is identified as the dominant factor, shifting the collapse mode from initial shallow shear failure to predominant wide shear collapse, notably at 90°/270° from the maximum horizontal stress direction, thereby significantly expanding the unstable zone. This dynamic assessment method provides crucial theoretical support for full life cycle integrity management and optimizing safe operation strategies for carbonate gas storage wells. Full article
(This article belongs to the Section Energy Systems)
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22 pages, 7820 KiB  
Article
A Junction Temperature Prediction Method Based on Multivariate Linear Regression Using Current Fall Characteristics of SiC MOSFETs
by Haihong Qin, Yang Zhang, Yu Zeng, Yuan Kang, Ziyue Zhu and Fan Wu
Sensors 2025, 25(15), 4828; https://doi.org/10.3390/s25154828 - 6 Aug 2025
Abstract
The junction temperature (Tj) is a key parameter reflecting the thermal behavior of Silicon carbide (SiC) MOSFETs and is essential for condition monitoring and reliability assessment in power electronic systems. However, the limited temperature sensitivity of switching characteristics makes it [...] Read more.
The junction temperature (Tj) is a key parameter reflecting the thermal behavior of Silicon carbide (SiC) MOSFETs and is essential for condition monitoring and reliability assessment in power electronic systems. However, the limited temperature sensitivity of switching characteristics makes it difficult for traditional single temperature-sensitive electrical parameters (TSEPs) to achieve accurate estimation. To address this challenge and enable practical thermal sensing applications, this study proposes an accurate, application-oriented Tj estimation method based on multivariate linear regression (MLR) using turn-off current fall time (tfi) and fall loss (Efi) as complementary TSEPs. First, the feasibility of using current fall time and current fall energy loss as TSEPs is demonstrated. Then, a coupled junction temperature prediction model is developed based on multivariate linear regression using tfi and Efi. The proposed method is experimentally validated through comparative analysis. Experimental results demonstrate that the proposed method achieves high prediction accuracy, highlighting its effectiveness and superiority in MLR approach based on the current fall phase characteristics of SiC MOSFETs. This method offers promising prospects for enhancing the condition monitoring, reliability assessment, and intelligent sensing capabilities of power electronics systems. Full article
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16 pages, 2848 KiB  
Article
Light-Guided Cyborg Beetles: An Analysis of the Phototactic Behavior and Steering Control of Endebius florensis (Coleoptera: Scarabaeidae)
by Tian-Hao Zhang, Zheng-Zhong Huang, Lei Jiang, Shen-Zhen Lv, Wen-Tao Zhu, Chao-Fan Zhang, Yi-Shi Shi and Si-Qin Ge
Biomimetics 2025, 10(8), 513; https://doi.org/10.3390/biomimetics10080513 - 6 Aug 2025
Abstract
Cyborg insects offer a biologically powered solution for locomotion control, but conventional methods typically rely on invasive electrical stimulation. Here, we introduce a noninvasive, phototaxis-based strategy to steer walking Endebius florensis beetles using light-emitting diode (LED) stimuli. Electroretinogram recordings revealed spectral sensitivity to [...] Read more.
Cyborg insects offer a biologically powered solution for locomotion control, but conventional methods typically rely on invasive electrical stimulation. Here, we introduce a noninvasive, phototaxis-based strategy to steer walking Endebius florensis beetles using light-emitting diode (LED) stimuli. Electroretinogram recordings revealed spectral sensitivity to blue, green, and yellow light, with reduced response to red. Behavioral assays demonstrated robust positive phototaxis to blue light and negative phototaxis to yellow. Using these findings, we built a wireless microcontroller-based backpack emitting directional blue light to induce steering. The beetles reliably turned toward the activated light, achieving angular deflections over 60° within seconds. This approach enables repeatable, trauma-free insect control and establishes a new paradigm for biohybrid locomotion systems. Full article
(This article belongs to the Special Issue Functional Morphology and Biomimetics: Learning from Insects)
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17 pages, 4116 KiB  
Article
A Bifunctional Anti-PD-1/TGF-β Fusion Antibody Restores Antitumour Immunity and Remodels the Tumour Microenvironment
by Lidi Nan, Yuting Qin, Xiao Huang, Mingzhu Pan, Xiaomu Wang, Yanqing Lv, Annette Sorensen, Xiaoqiang Kang, Hong Ling and Juan Zhang
Int. J. Mol. Sci. 2025, 26(15), 7567; https://doi.org/10.3390/ijms26157567 - 5 Aug 2025
Abstract
Although PD-1/PD-L1 inhibitors have transformed cancer immunotherapy, a substantial proportion of patients derive no clinical benefit due to resistance driven by the tumour microenvironment (TME). Transforming growth factor-β (TGF-β) is a key immunosuppressive cytokine implicated in this resistance. Several bifunctional antibodies that co-target [...] Read more.
Although PD-1/PD-L1 inhibitors have transformed cancer immunotherapy, a substantial proportion of patients derive no clinical benefit due to resistance driven by the tumour microenvironment (TME). Transforming growth factor-β (TGF-β) is a key immunosuppressive cytokine implicated in this resistance. Several bifunctional antibodies that co-target PD-1 and TGF-β signalling have entered clinical trials and shown encouraging efficacy, but the mechanistic basis of their synergy is not fully understood. Here, we engineered 015s, a bifunctional fusion antibody that simultaneously targets murine PD-1 and TGF-β and evaluated its antitumour efficacy and mechanistic impact in pre-clinical models. Antibody 015s exhibited high affinity, dual target binding, and the effective inhibition of PD-1 and TGF-β signalling. In vivo, 015s significantly suppressed tumour growth compared with anti-mPD-1 or TGF-β receptor II (TGF-βRII) monotherapy. When combined with the CD24-targeted ADC, 015s produced even greater antitumour activity and achieved complete tumour regression. Mechanistic studies demonstrated that 015s significantly reduced tumour cell migration and invasion, reversed epithelial–mesenchymal transition (EMT), decreased microvascular density, and attenuated collagen deposition within the TME. Antibody 015s also decreased bioactive TGF-β1 and increased intratumoural IFN-γ, creating a more immunostimulatory milieu. These findings support further development of PD-1/TGF-β bifunctional antibodies for cancers with high TGF-β activity or limited response to immune checkpoint blockade. Full article
(This article belongs to the Section Molecular Immunology)
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14 pages, 1567 KiB  
Article
Determining the Benzo[a]pyrene Degradation, Tolerance, and Adsorption Mechanisms of Kefir-Derived Bacterium Bacillus mojavensis TC-5
by Zhixian Duo, Haohao Li, Zeyu Wang, Zhiwei Zhang, Zhuonan Yang, Aofei Jin, Minwei Zhang, Rui Zhang and Yanan Qin
Foods 2025, 14(15), 2727; https://doi.org/10.3390/foods14152727 - 4 Aug 2025
Viewed by 109
Abstract
Microbial detoxification, as an environmentally friendly strategy, has been widely applied for benzo[a]pyrene (BaP) degradation. Within this approach, food-derived microbial strains offer unique advantages in safety, specificity, and sustainability for detoxifying food-borne BaP. In this study, we aimed to explore the potential of [...] Read more.
Microbial detoxification, as an environmentally friendly strategy, has been widely applied for benzo[a]pyrene (BaP) degradation. Within this approach, food-derived microbial strains offer unique advantages in safety, specificity, and sustainability for detoxifying food-borne BaP. In this study, we aimed to explore the potential of such strains in BaP degradation. Bacillus mojavensis TC-5, a strain that degrades BaP, was isolated from kefir grains. Surprisingly, 12 genes encoding dehydrogenases, synthases, and oxygenases, including betB, fabHB, qdoI, cdoA, and bioI, which are related to BaP degradation, were up-regulated by 2.01-fold to 4.52-fold in TC-5. Two potential degradation pathways were deduced. In pathway I, dioxygenase, betaine aldehyde dehydrogenase, and beta-ketoacyl-ACP synthase III FabHB act sequentially on BaP to form 4H-pyran-4-one,2,3-dihydro-3,5-dihydroxy-6-methyl via the phthalic acid pathway. In the presence of the cytochrome P450 enzyme, BaP progressively mediates ring cleavage via the anthracene pathway, eventually forming 3-methyl-5-propylnonane in pathway II. Notably, TC-5 achieved an impressive BaP removal efficiency of up to 63.94%, with a degradation efficiency of 32.89%. These results suggest that TC-5 has significant potential for application in addressing food-borne BaP contamination. Moreover, our findings expand the application possibilities of Xinjiang fermented milk products and add to the available green strategies for BaP degradation in food systems. Full article
(This article belongs to the Section Nutraceuticals, Functional Foods, and Novel Foods)
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21 pages, 6621 KiB  
Article
Genome-Wide Identification and Expression Pattern Analysis of the Late Embryogenesis Abundant (LEA) Family in Foxtail Millet (Setaria italica L.)
by Yingying Qin, Yiru Zhao, Xiaoyu Li, Ruifu Wang, Shuo Chang, Yu Zhang, Xuemei Ren and Hongying Li
Genes 2025, 16(8), 932; https://doi.org/10.3390/genes16080932 - 4 Aug 2025
Viewed by 123
Abstract
Background/Objectives: Late embryogenesis abundant (LEA) proteins regulate stress responses and contribute significantly to plant stress tolerance. As a model species for stress resistance studies, foxtail millet (Setaria italica) lacks comprehensive characterization of its LEA gene family. This study aimed to [...] Read more.
Background/Objectives: Late embryogenesis abundant (LEA) proteins regulate stress responses and contribute significantly to plant stress tolerance. As a model species for stress resistance studies, foxtail millet (Setaria italica) lacks comprehensive characterization of its LEA gene family. This study aimed to comprehensively identify SiLEA genes in foxtail millet and elucidate their functional roles and tissue-specific expression patterns. Methods: Genome-wide identification of SiLEA genes was conducted, followed by phylogenetic reconstruction, cis-acting element analysis of promoters, synteny analysis, and expression profiling. Results: Ninety-four SiLEA genes were identified and classified into nine structurally distinct subfamilies, which are unevenly distributed across all nine chromosomes. Phylogenetic analysis showed closer clustering of SiLEA genes with sorghum and rice orthologs than with Arabidopsis thaliana AtLEA genes. Synteny analysis indicated the LEA gene family expansion through tandem and segmental duplication. Promoter cis-element analysis linked SiLEA genes to plant growth regulation, stress responses, and hormone signaling. Transcriptome analysis revealed tissue-specific expression patterns among SiLEA members, while RT-qPCR verified ABA-induced transcriptional regulation of SiLEA genes. Conclusions: This study identified 94 SiLEA genes grouped into nine subfamilies with distinct spatial expression profiles. ABA treatment notably upregulated SiASR-2, SiASR-5, and SiASR-6 in both shoots and roots. Full article
(This article belongs to the Section Plant Genetics and Genomics)
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16 pages, 2547 KiB  
Article
Formation and Biological Characteristics Analysis of Artificial Gynogenetic WuLi Carp Induced by Inactivated Sperm of Megalobrama Amblycephala
by Xiaowei Xu, Enkui Hu, Qian Xiao, Xu Huang, Chongqing Wang, Xidan Xu, Kun Zhang, Yue Zhou, Jinhai Bai, Zhengkun Liu, Yuchen Jiang, Yan Tang, Xinyi Deng, Siyang Li, Wanjing Peng, Ling Xiong, Yuhan Yang, Zeyang Li, Ming Ma, Qinbo Qin and Shaojun Liuadd Show full author list remove Hide full author list
Biology 2025, 14(8), 994; https://doi.org/10.3390/biology14080994 - 4 Aug 2025
Viewed by 153
Abstract
Artificial gynogenesis is an essential technique for aquaculture breeding. Fertile offspring of the WuLi carp (Cyprinus carpio var. Quanzhounensis, 2n = 100, WLC) were successfully produced via gynogenesis using ultraviolet-irradiated sperm from the blunt snout bream (Megalobrama amblycephala, 2 [...] Read more.
Artificial gynogenesis is an essential technique for aquaculture breeding. Fertile offspring of the WuLi carp (Cyprinus carpio var. Quanzhounensis, 2n = 100, WLC) were successfully produced via gynogenesis using ultraviolet-irradiated sperm from the blunt snout bream (Megalobrama amblycephala, 2n = 48, BSB). As anticipated, gonadal section examination confirmed that all gynogenetic WuLi carp (2n = 100, GWB) were female. To investigate whether paternal DNA fragments from BSB were integrated into the GWB genome, comparative analyses of morphological traits, DNA content, chromosomal numbers, 5S rDNA sequences, microsatellite DNA markers, fluorescence in situ hybridization (FISH), growth performance and nutritional composition were systematically conducted between GWB and maternal WLC. The results revealed pronounced maternal inheritance patterns across morphological characteristics, DNA quantification, chromosomal configurations, 5S rDNA sequences and FISH signals, while microsatellite detection unequivocally confirmed paternal BSB DNA fragment integration into the GWB genome. Remarkably, GWB demonstrated significantly superior growth performance and elevated unsaturated fatty acid content relative to the maternal line. This approach not only addressed germplasm degradation in WLC but also provided valuable theoretical foundations for breeding programs in this commercially significant species. Full article
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31 pages, 4845 KiB  
Article
Mechanism Analysis and Establishment of a Prediction Model for the Total Pressure Loss in the Multi-Branch Pipeline System of the Pneumatic Seeder
by Wei Qin, Cheng Qian, Yuwu Li, Daoqing Yan, Zhuorong Fan, Minghua Zhang, Ying Zang and Zaiman Wang
Agriculture 2025, 15(15), 1681; https://doi.org/10.3390/agriculture15151681 - 3 Aug 2025
Viewed by 138
Abstract
This study aims to clarify the nonlinear pressure loss patterns of the pneumatic system in a pneumatic seeder under varying pipeline structures and airflow parameters, and to develop a rapid prediction equation for the main pipe’s pressure loss. The studied multi-branch pipeline system [...] Read more.
This study aims to clarify the nonlinear pressure loss patterns of the pneumatic system in a pneumatic seeder under varying pipeline structures and airflow parameters, and to develop a rapid prediction equation for the main pipe’s pressure loss. The studied multi-branch pipeline system consists of a main pipe, a header, and ten branch pipes. The main pipe is vertically installed at the center of the header in a straight-line configuration. The ten branch pipes are symmetrically and evenly spaced along the axial direction of the header, distributed on both sides of the main pipe. The outlet directions of the branch pipes are arranged in a 180° orientation opposite to the inlet direction of the main pipe, forming a symmetric multi-branch configuration. Firstly, this study investigated the flow characteristics within the multi-branch pipeline of the pneumatic system and elaborated on the mechanism of flow division in the pipeline. The key geometric factors affecting airflow were identified. Secondly, from a microscopic perspective, CFD simulations were employed to analyze the fundamental causes of pressure loss in the multi-branch pipeline system. Finally, from a macroscopic perspective, a dimensional analysis method was used to establish an empirical equation describing the relationship between the pressure loss (P) and several influencing factors, including the air density (ρ), air’s dynamic viscosity (μ), closed-end length of the header (Δl), branch pipe 1’s flow rate (Q), main pipe’s inner diameter (D), header’s inner diameter (γ), branch pipe’s inner diameter (d), and the spacing of the branch pipe (δ). The results of the bench tests indicate that when 0.0018 m3·s−1Q ≤ 0.0045 m3·s−1, 0.0272 m < d ≤ 0.036 m, 0.225 m < δ ≤ 0.26 m, 0.057 m ≤ γ ≤ 0.0814 m, and 0.0426 m ≤ D ≤ 0.0536 m, the prediction accuracy of the empirical equation can be controlled within 10%. Therefore, the equation provides a reference for the structural design and optimization of pneumatic seeders’ multi-branch pipelines. Full article
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16 pages, 3158 KiB  
Article
Comparative Metabolomics Analysis of Four Pineapple (Ananas comosus L. Merr) Varieties with Different Fruit Quality
by Ping Zheng, Jiahao Wu, Denglin Li, Shiyu Xie, Xinkai Cai, Qiang Xiao, Jing Wang, Qinglong Yao, Shengzhen Chen, Ruoyu Liu, Yuqin Liang, Yangmei Zhang, Biao Deng, Yuan Qin and Xiaomei Wang
Plants 2025, 14(15), 2400; https://doi.org/10.3390/plants14152400 - 3 Aug 2025
Viewed by 189
Abstract
Understanding the metabolic characteristics of pineapple varieties is crucial for market expansion and diversity. This study performed comparative metabolomic analysis on the “Comte de Paris” (BL) and three Taiwan-introduced varieties: “Tainong No. 11” (XS), “Tainong No. 23” (MG), and “Tainong No. 13” (DM). [...] Read more.
Understanding the metabolic characteristics of pineapple varieties is crucial for market expansion and diversity. This study performed comparative metabolomic analysis on the “Comte de Paris” (BL) and three Taiwan-introduced varieties: “Tainong No. 11” (XS), “Tainong No. 23” (MG), and “Tainong No. 13” (DM). A total of 551 metabolites were identified across the four varieties, with 231 metabolites exhibiting no significant differences between all varieties. This included major sugars such as sucrose, glucose, and fructose, as well as key acids like citric, malic, and quinic acids, indicating that the in-season maturing fruits of different pineapple varieties can all achieve good sugar–acid accumulation under suitable conditions. The differentially accumulated metabolites (DAMs) that were identified among the four varieties all primarily belonged to several major subclasses, including phenolic acids, flavonoids, amino acids and derivatives, and alkaloids, but the preferentially accumulated metabolites in each variety varied greatly. Specifically, branched-chain amino acids (L-leucine, L-isoleucine, and L-valine) and many DAMs in the flavonoid, phenolic acid, lignan, and coumarin categories were most abundant in MG, which might contribute to its distinct and enriched flavor and nutritional value. XS, meanwhile, exhibited a notable accumulation of aromatic amino acids (L-phenylalanine, L-tryptophan), various phenolic acids, and many lignans and coumarins, which may be related to its unique flavor profile. In DM, the dominant accumulation of jasmonic acid might contribute to its greater adaptability to low temperatures during autumn and winter, allowing off-season fruits to maintain good quality. The main cultivar BL exhibited the highest accumulation of L-ascorbic acid and many relatively abundant flavonoids, making it a good choice for antioxidant benefits. These findings offer valuable insights for promoting different varieties and advancing metabolome-based pineapple improvement programs. Full article
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25 pages, 5704 KiB  
Article
A Robust Framework for Bamboo Forest AGB Estimation by Integrating Geostatistical Prediction and Ensemble Learning
by Lianjin Fu, Qingtai Shu, Cuifen Xia, Zeyu Li, Hailing He, Zhengying Li, Shaoyang Ma, Chaoguan Qin, Rong Wei, Qin Xiang, Xiao Zhang, Yiran Zhang and Huashi Cai
Remote Sens. 2025, 17(15), 2682; https://doi.org/10.3390/rs17152682 - 3 Aug 2025
Viewed by 146
Abstract
Accurate above-ground biomass (AGB) quantification is confounded by signal saturation and data fusion challenges, particularly in structurally complex ecosystems like bamboo forests. To address these gaps, this study developed a two-stage framework to map the AGB of Dendrocalamus giganteus in a subtropical mountain [...] Read more.
Accurate above-ground biomass (AGB) quantification is confounded by signal saturation and data fusion challenges, particularly in structurally complex ecosystems like bamboo forests. To address these gaps, this study developed a two-stage framework to map the AGB of Dendrocalamus giganteus in a subtropical mountain environment. This study first employed Empirical Bayesian Kriging Regression Prediction (EBKRP) to spatialize sparse GEDI and ICESat-2 LiDAR metrics using Sentinel-2 and topographic covariates. Subsequently, a stacked ensemble model, integrating four machine learning algorithms, predicted AGB from the full suite of continuous variables. The stacking model achieved high predictive accuracy (R2 = 0.84, RMSE = 11.07 Mg ha−1) and substantially mitigated the common bias of underestimating high AGB, improving the predicted observed regression slope from a base model average of 0.63 to 0.81. Furthermore, SHAP analysis provided mechanistic insights, identifying the canopy photon rate as the dominant predictor and quantifying the ecological thresholds governing AGB distribution. The mean AGB density was 71.8 ± 21.9 Mg ha−1, with its spatial pattern influenced by elevation and human settlements. This research provides a robust framework for synergizing multi-source remote sensing data to improve AGB estimation, offering a refined methodological pathway for large-scale carbon stock assessments. Full article
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19 pages, 3631 KiB  
Article
Genome-Wide Analyses of the XTH Gene Family in Brachypodium distachyon and Functional Analyses of the Role of BdXTH27 in Root Elongation
by Hongyan Shen, Qiuping Tan, Wenzhe Zhao, Mengdan Zhang, Cunhao Qin, Zhaobing Liu, Xinsheng Wang, Sendi An, Hailong An and Hongyu Wu
Int. J. Mol. Sci. 2025, 26(15), 7457; https://doi.org/10.3390/ijms26157457 - 1 Aug 2025
Viewed by 119
Abstract
Xyloglucan endotransglucosylase/hydrolases (XTHs) are a class of cell wall-associated enzymes involved in the construction and remodeling of cellulose/xyloglucan crosslinks. However, knowledge of this gene family in the model monocot Brachypodium distachyon is limited. A total of 29 BdXTH genes were identified from the [...] Read more.
Xyloglucan endotransglucosylase/hydrolases (XTHs) are a class of cell wall-associated enzymes involved in the construction and remodeling of cellulose/xyloglucan crosslinks. However, knowledge of this gene family in the model monocot Brachypodium distachyon is limited. A total of 29 BdXTH genes were identified from the whole genome, and these were further divided into three subgroups (Group I/II, Group III, and the Ancestral Group) through evolutionary analysis. Gene structure and protein motif analyses indicate that closely clustered BdXTH genes are relatively conserved within each group. A highly conserved amino acid domain (DEIDFEFLG) responsible for catalytic activity was identified in all BdXTH proteins. We detected three pairs of segmentally duplicated BdXTH genes and five groups of tandemly duplicated BdXTH genes, which played vital roles in the expansion of the BdXTH gene family. Cis-elements related to hormones, growth, and abiotic stress responses were identified in the promoters of each BdXTH gene, and when roots were treated with two abiotic stresses (salinity and drought) and four plant hormones (IAA, auxin; GA3, gibberellin; ABA, abscisic acid; and BR, brassinolide), the expression levels of many BdXTH genes changed significantly. Transcriptional analyses of the BdXTH genes in 38 tissue samples from the publicly available RNA-seq data indicated that most BdXTH genes have distinct expression patterns in different tissues and at different growth stages. Overexpressing the BdXTH27 gene in Brachypodium led to reduced root length in transgenic plants, which exhibited higher cellulose levels but lower hemicellulose levels compared to wild-type plants. Our results provide valuable information for further elucidation of the biological functions of BdXTH genes in the model grass B. distachyon. Full article
(This article belongs to the Section Molecular Plant Sciences)
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19 pages, 851 KiB  
Review
The Multifaceted Role of Regulatory T Cells in Sepsis: Mechanisms, Heterogeneity, and Pathogen-Tailored Therapies
by Yingyu Qin and Jingli Zhang
Int. J. Mol. Sci. 2025, 26(15), 7436; https://doi.org/10.3390/ijms26157436 - 1 Aug 2025
Viewed by 387
Abstract
Sepsis is a life-threatening condition caused by a dysregulated immune response to infection, characterized by an initial hyperinflammatory phase frequently followed by compensatory immunosuppression (CARS). Regulatory T cells (Tregs) play a critical, biphasic role: inadequate suppression during early hyperinflammation fails to control cytokine [...] Read more.
Sepsis is a life-threatening condition caused by a dysregulated immune response to infection, characterized by an initial hyperinflammatory phase frequently followed by compensatory immunosuppression (CARS). Regulatory T cells (Tregs) play a critical, biphasic role: inadequate suppression during early hyperinflammation fails to control cytokine storms, while excessive/persistent activity in late-phase immunosuppression drives immune paralysis and secondary infection susceptibility. This review explores advances in targeting Treg immunoregulation across bacterial, viral, and fungal sepsis, where pathogenic type critically influenced the types of immunoresponses, shaping Treg heterogeneity in terms of phenotype, survival, and function. Understanding this multifaceted Treg biology offers novel therapeutic avenues, highlighting the need to decipher functional heterogeneity and develop precisely timed, pathogen-tailored immunomodulation to safely harness beneficial Treg roles while mitigating detrimental immunosuppression. Full article
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