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Authors = Lili Yang ORCID = 0000-0003-1277-3791

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17 pages, 2539 KiB  
Article
Auxiliary Value of [18F]F-Fluorocholine PET/CT in Evaluating Post-Stereotactic Radiosurgery Recurrence of Lung Cancer Brain Metastases: A Comparative Analysis with Contrast-Enhanced MRI
by Yafei Zhang, Mimi Xu, Shuye Yang, Lili Lin, Huatao Wang, Kui Zhao, Hong Yang and Xinhui Su
Cancers 2025, 17(15), 2591; https://doi.org/10.3390/cancers17152591 - 7 Aug 2025
Abstract
Background/Objectives: This study aims to evaluate the additional value of [18F]F-fluorocholine ([18F]F-FCH) PET/CT over contrast-enhanced magnetic resonance imaging (CE-MRI) in detecting the recurrence of brain metastases (BMs) after stereotactic radiosurgery (SRS) in patients with lung cancer brain metastases (LCBMs). [...] Read more.
Background/Objectives: This study aims to evaluate the additional value of [18F]F-fluorocholine ([18F]F-FCH) PET/CT over contrast-enhanced magnetic resonance imaging (CE-MRI) in detecting the recurrence of brain metastases (BMs) after stereotactic radiosurgery (SRS) in patients with lung cancer brain metastases (LCBMs). Methods: Thirty-one patients with suspected recurrence of BM in LCBM after SRS were enrolled in this retrospective study. They underwent both [18F]F-FCH PET/CT and CE-MRI within 2 weeks. The tumor imaging parameters and clinical features were analyzed. The results of histopathology or radiographic follow-up served as the reference standard for the final diagnosis. Results: In these 31 patients, there were 54 lesions, of which 27 lesions were proven to be BM recurrence, while 27 lesions were non-recurrence. [18F]F-FCH PET/CT showed high radiotracer uptake in recurrent lesions of BM and identified 24 positive lesions (88.89% of sensitivity), while CE-MRI indicated 23 positive lesions (85.19% of sensitivity). [18F]F-FCH PET/CT indicated higher specificity (81.48%) and accuracy (85.19%) in detecting recurrence of BM than CE-MRI (40.74% and 62.96%, both p < 0.05), particularly in frontal lobes and cerebella. For lesion sizes, the accuracy of [18F]F-FCH PET/CT in detecting recurrent lesions was higher than that of CE-MRI for lesions over 1.0 cm but below 2.0 cm (p = 0.016). The detective performance of [18F]F-FCH PET/CT combined with CE-MRI was higher than [18F]F-FCH PET/CT or CE-MRI alone (all p < 0.05). Interestingly, TLC (≥4.11) was significantly correlated with poor intracranial PFS (iPFS), meaning it was a significant prognostic factor for iPFS. Conclusions: This study identified that compared with CE-MRI, [18F]F-FCH PET/CT demonstrated higher specificity and accuracy in diagnosing recurrence of BM in LCBM after SRS. Combining [18F]F-FCH PET/CT with CE-MRI has the potential to improve diagnostic performance for recurrence of BM and management of patient treatment. TLC was an independent risk factor for iPFS. Full article
(This article belongs to the Section Cancer Metastasis)
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17 pages, 6632 KiB  
Article
Metabolomic and Physiological Analysis of Blueberry (Vaccinium spp.) in Response to Ericoid Mycorrhizal Fungi (Oidiodendron maius H14)
by Haifeng Zhu, Yixiao Wang, Jing Jiang, Zhiyu Yang, Lili Li and Hongyi Yang
Horticulturae 2025, 11(8), 918; https://doi.org/10.3390/horticulturae11080918 - 5 Aug 2025
Viewed by 24
Abstract
Ericoid mycorrhizal fungi (EMF) enhance plant fitness and metabolic regulations in nutrient-poor soils, though the mechanisms diving these interactions require further elucidation. This study investigated the physiological and metabolic responses of blueberry seedlings following 2- and 3-weeks inoculation with Oidiodendron maius H14. The [...] Read more.
Ericoid mycorrhizal fungi (EMF) enhance plant fitness and metabolic regulations in nutrient-poor soils, though the mechanisms diving these interactions require further elucidation. This study investigated the physiological and metabolic responses of blueberry seedlings following 2- and 3-weeks inoculation with Oidiodendron maius H14. The results indicated that EMF could significantly increases plant biomass, improve the accumulation of osmoregulatory substances in leaves. Additionally, the colonization rate of EMF are 26.18% and 30.22% after 2- and 3-weeks, respectively. The Metabolomics analysis identified 758 (593 up- and 165 down-regulated) and 805 (577 up- and 228 down-regulated) differential metabolites in roots at 2- and 3-weeks inoculation with O. maius H14, respectively. KEGG pathway annotation revealed that O. maius H14 triggered various amino acid metabolism pathways, including tryptophan metabolism and arginine and proline metabolism. These findings suggested that O. maius H14 stimulated root-specific biosynthesis of growth-promoting compounds and antimicrobial compounds. Concomitant downregulation of stress-associated genes and upregulation of glutamine synthetase suggest EMF modulates host defense responses to facilitate symbiosis. Thus, our results demonstrated that O. maius H14 orchestrates a metabolic reprogramming in blueberry roots, enhancing growth and stress tolerance through coordinated changes in primary and specialized metabolism, which could inform strategies for improving symbiosis and metabolic engineering in horticultural practices. Full article
(This article belongs to the Section Fruit Production Systems)
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14 pages, 2070 KiB  
Article
Carcass and Meat Quality Characteristics and Changes of Lean and Fat Pigs After the Growth Turning Point
by Tianci Liao, Mailin Gan, Yan Zhu, Yuhang Lei, Yiting Yang, Qianli Zheng, Lili Niu, Ye Zhao, Lei Chen, Yuanyuan Wu, Lixin Zhou, Jia Xue, Xiaofeng Zhou, Yan Wang, Linyuan Shen and Li Zhu
Foods 2025, 14(15), 2719; https://doi.org/10.3390/foods14152719 - 3 Aug 2025
Viewed by 322
Abstract
Pork is a major global source of animal protein, and improving both its production efficiency and meat quality is a central goal in modern animal agriculture and food systems. This study investigated post-inflection-point growth patterns in two genetically distinct pig breeds—the lean-type Yorkshire [...] Read more.
Pork is a major global source of animal protein, and improving both its production efficiency and meat quality is a central goal in modern animal agriculture and food systems. This study investigated post-inflection-point growth patterns in two genetically distinct pig breeds—the lean-type Yorkshire pig (YP) and the fatty-type Qingyu pig (QYP)—with the aim of elucidating breed-specific characteristics that influence pork quality and yield. Comprehensive evaluations of carcass traits, meat quality attributes, nutritional composition, and gene expression profiles were conducted. After the growth inflection point, carcass traits exhibited greater variability than meat quality traits in both breeds, though with distinct patterns. YPs displayed superior muscle development, with the longissimus muscle area (LMA) increasing rapidly before plateauing at ~130 kg, whereas QYPs maintained more gradual but sustained muscle growth. In contrast, intramuscular fat (IMF)—a key determinant of meat flavor and texture—accumulated faster in YPs post inflection but plateaued earlier in QYPs. Correlation and clustering analyses revealed more synchronized regulation of meat quality traits in QYPs, while YPs showed greater trait variability. Gene expression patterns aligned with these phenotypic trends, highlighting distinct regulatory mechanisms for muscle and fat development in each breed. In addition, based on the growth curves, we calculated the peak age at which the growth rate declined in lean-type and fat-type pigs, which was approximately 200 days for YPs and around 270 days for QYPs. This suggests that these ages may represent the optimal slaughter times for the respective breeds, balancing both economic efficiency and meat quality. These findings provide valuable insights for enhancing pork quality through precision management and offer theoretical guidance for developing breed-specific feeding strategies, slaughter timing, and value-added pork production tailored to consumer preferences in the modern food market. Full article
(This article belongs to the Section Meat)
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2 pages, 122 KiB  
Correction
Correction: Huang et al. The Safety and Immunogenicity of a Quadrivalent Influenza Subunit Vaccine in Healthy Children Aged 6–35 Months: A Randomized, Blinded and Positive-Controlled Phase III Clinical Trial. Vaccines 2025, 13, 467
by Lili Huang, Guangfu Li, Yuhui Zhang, Xue Zhao, Kai Wang, Chunyu Jia, Wei Zhang, Jiebing Tan, Xiaofen Chen, Qin Li, Hongyan Jiang, Rui An, Wenna Leng, Yongli Yang, Youcai An, Yanxia Wang and Yaodong Zhang
Vaccines 2025, 13(8), 826; https://doi.org/10.3390/vaccines13080826 - 1 Aug 2025
Viewed by 191
Abstract
The authors would like to make the following corrections to this published paper [...] Full article
23 pages, 40218 KiB  
Article
ACSL4 Drives C5a/C5aR1–Calcium-Induced Fibroblast-to-Myofibroblast Transition in a Bleomycin-Induced Mouse Model of Pulmonary Fibrosis
by Tingting Ren, Jia Shi, Lili Zhuang, Ruiting Su, Yimei Lai and Niansheng Yang
Biomolecules 2025, 15(8), 1106; https://doi.org/10.3390/biom15081106 - 31 Jul 2025
Viewed by 307
Abstract
Idiopathic pulmonary fibrosis (IPF) is characterized by excessive extracellular matrix (ECM) deposition driven by aberrant fibroblast-to-myofibroblast transition (FMT). However, the upstream regulators and downstream effectors of this process remain incompletely understood. Here, we identify acyl-CoA synthetase long-chain family member 4 (ACSL4), a lipid [...] Read more.
Idiopathic pulmonary fibrosis (IPF) is characterized by excessive extracellular matrix (ECM) deposition driven by aberrant fibroblast-to-myofibroblast transition (FMT). However, the upstream regulators and downstream effectors of this process remain incompletely understood. Here, we identify acyl-CoA synthetase long-chain family member 4 (ACSL4), a lipid metabolic enzyme, as a critical mediator linking complement component 5a (C5a)/C5a receptor 1 (C5aR1) signaling to FMT via calcium signaling. In bleomycin (BLM)-induced pulmonary fibrosis of C57BL/6JGpt mice, and in C5a-stimulated primary lung fibroblasts, the expression of ACSL4 was markedly upregulated. Pharmacological inhibition of ACSL4 (PRGL493) or C5aR1 (PMX53) attenuated the deposition of ECM and suppressed the expression of fibrotic markers in vivo and in vitro. Mechanistically, the activation of C5a/C5aR1 signaling increased intracellular calcium levels and promoted the expression of ACSL4, while inhibition of calcium signaling (FK506) reversed the upregulation of ACSL4 and FMT-related changes, including the expression of α-smooth muscle actin (αSMA) and the migration of fibroblasts. Notably, inhibition of ACSL4 did not affect the proliferation of fibroblasts, suggesting its specific role in phenotypic transition. These findings demonstrate that ACSL4 functions downstream of C5a/C5aR1-induced calcium signaling to promote FMT and the progression of pulmonary fibrosis. Targeting ACSL4 may therefore offer a novel therapeutic strategy for IPF. Full article
(This article belongs to the Section Cellular Biochemistry)
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12 pages, 1279 KiB  
Article
Study on the Excretion of a New Antihypertensive Drug 221s (2,9) in Rats
by Yunmei Chen, Kuan Yang, Shaojing Liu, Lili Yu, Rong Wang and Bei Qin
Pharmaceuticals 2025, 18(8), 1138; https://doi.org/10.3390/ph18081138 - 30 Jul 2025
Viewed by 240
Abstract
Background/Objectives: The novel compound 221s (2,9), derived from danshensu and ACEI-active proline, exhibits antihypertensive effects (50/35 mmHg SBP/DBP reduction in SHRs) with potential cough mitigation. However, its excretion kinetics remain unstudied. This study investigates 221s (2,9) elimination in rats to bridge this [...] Read more.
Background/Objectives: The novel compound 221s (2,9), derived from danshensu and ACEI-active proline, exhibits antihypertensive effects (50/35 mmHg SBP/DBP reduction in SHRs) with potential cough mitigation. However, its excretion kinetics remain unstudied. This study investigates 221s (2,9) elimination in rats to bridge this knowledge gap. Methods: Excretion of unchanged 221s (2,9) was quantified in urine, feces, and bile of Sprague-Dawley rats after oral administration (30 mg/kg). Concentrations of unchanged 221s (2,9) in all matrices were quantified using developed UPLC-MS/MS that underwent methodological validation. Excretion amount, excretion velocity, and accumulative excretion rate of 221s (2,9) were calculated. Results: Urinary excretion exhibited rapid elimination kinetics, reaching peak cumulative excretion rates (138.81 ± 15.56 ng/h) at 8 h post-dosing and plateauing by 48 h (cumulative excretion: 1479.81 ± 155.7 ng). Fecal excretion displayed an accelerated elimination phase between 4 and 8 h (excretion rate: 7994.29 ± 953.75 ng/h), followed by a sustained slow-release phase, culminating in a cumulative output of 36,726.31 ± 5507 ng at 48 h. Biliary excretion was minimal and ceased entirely by 24 h. Notably, total recovery of unchanged drug across all matrices remained below 1% (urine: 0.020 ± 0.021%; feces: 0.73 ± 0.069%; bile: 0.00044 ± 0.00002%) at 72 h. Conclusions: This study provides the first definitive excretion data for 221s (2,9). Quantitative analysis via a validated UPLC-MS/MS method revealed that fecal excretion is the principal elimination pathway for unchanged 221s (2,9) in rats, with direct excretion of the parent compound accounting for <1% of the administered dose over 72 h. Future studies will employ extended pharmacokinetic monitoring and concurrent UPLC-MS/MS analysis of the parent drug and phase II conjugates to resolve the observed mass imbalance and elucidate contributions to total elimination. Full article
(This article belongs to the Section Pharmacology)
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25 pages, 4277 KiB  
Article
C2H2 Zinc Finger Proteins GIS2 and ZFP8 Regulate Trichome Development via Hormone Signaling in Arabidopsis
by Muhammad Umair Yasin, Lili Sun, Chunyan Yang, Bohan Liu and Yinbo Gan
Int. J. Mol. Sci. 2025, 26(15), 7265; https://doi.org/10.3390/ijms26157265 - 27 Jul 2025
Viewed by 230
Abstract
Trichomes are specialized epidermal structures that protect plants from environmental stresses, regulated by transcription factors integrating hormonal and environmental cues. This study investigates the roles of two C2H2 zinc finger proteins, GIS2 and ZFP8, in regulating trichome patterning in Arabidopsis thaliana. [...] Read more.
Trichomes are specialized epidermal structures that protect plants from environmental stresses, regulated by transcription factors integrating hormonal and environmental cues. This study investigates the roles of two C2H2 zinc finger proteins, GIS2 and ZFP8, in regulating trichome patterning in Arabidopsis thaliana. Using dexamethasone-inducible overexpression lines, transcriptomic profiling, and chromatin immunoprecipitation, we identified 142 GIS2- and 138 ZFP8-associated candidate genes involved in sterol metabolism, senescence, and stress responses. GIS2 positively and directly regulated the expression of SQE5, linked to sterol biosynthesis and drought tolerance, and repressed SEN1, a senescence marker associated with abscisic acid and phosphate signaling. ZFP8 modulated stress-related target genes, including PR-4 and SPL15, with partial functional overlap between GIS family members. Spatially, GIS2 functions in inflorescence trichomes via integrating gibberellin-cytokinin pathways, while ZFP8 influences leaf trichomes through cytokinin and abscisic acid signal. Gibberellin treatment stabilized GIS2 protein and induced SQE5 expression, whereas SEN1 repression was gibberellin-independent. Chromatin immunoprecipitation and DEX-CHX experiment confirmed GIS2 binding to SQE5 and SEN1 promoters at conserved C2H2 motifs. These findings highlight hormone-mediated transcriptional regulation of trichome development by GIS2 and ZFP8, offering mechanistic insight into signal integration. The results provide a foundation for future crop improvement strategies targeting trichome-associated stress resilience. Full article
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18 pages, 1169 KiB  
Article
Multi-Dimensional Analysis of Quality-Related Traits Affecting the Taste of Main Cultivated Japonica Rice Varieties in Northern China
by Hongwei Yang, Liying Zhang, Xiangquan Gao, Shi Han, Zuobin Ma and Lili Wang
Agronomy 2025, 15(8), 1757; https://doi.org/10.3390/agronomy15081757 - 22 Jul 2025
Viewed by 325
Abstract
The quality of rice, one of the most important food crops in the world, is directly related to people’s dietary experience and nutritional health. With the improvement in living standards, consumer requirements for the taste quality of rice are becoming increasingly strict. Japonica [...] Read more.
The quality of rice, one of the most important food crops in the world, is directly related to people’s dietary experience and nutritional health. With the improvement in living standards, consumer requirements for the taste quality of rice are becoming increasingly strict. Japonica rice occupies an important position in rice production due to its rich genetic diversity and excellent agronomic characteristics. In this study, LJ433, JY653, LJ218, LJ177, LY66, and LX21, which are mainly popularized in northern China and have different taste values, were selected as the experimental subjects, and YJ219, which won the gold award in the third China high-quality rice variety taste quality evaluation, was taken as the control (CK). Low-field nuclear magnetic resonance and spectral analysis were adopted as the main detection techniques. The effects of free water (peak area increased by 13.24–86.68% when p < 0.05), bound water, appearance characteristics (such as chalkiness, which decreased by 18.48–86.48%), and chemical composition (amylose content decreased by 3.76–26.47%) on the taste value of rice were systematically analyzed, and a multi-dimensional “appearance–palatability–nutrition” evaluation system was constructed. The experimental results indicated that increasing the free water content, reducing the chalkiness and chemical component content could significantly improve the taste value of rice (p < 0.05). The results of this research provide a theoretical basis for breeding new high-yield and high-quality rice varieties and have guiding significance for the practice of rice planting and processing. Full article
(This article belongs to the Section Plant-Crop Biology and Biochemistry)
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22 pages, 12756 KiB  
Article
The Antidiabetic Mechanisms of Cinnamon Extract: Insights from Network Pharmacology, Gut Microbiota, and Metabolites
by Rong Wang, Kuan Yang, Xuefeng Liu, Yiye Zhang, Yunmei Chen, Nana Wang, Lili Yu, Shaojing Liu, Yaqi Hu and Bei Qin
Curr. Issues Mol. Biol. 2025, 47(7), 543; https://doi.org/10.3390/cimb47070543 - 12 Jul 2025
Viewed by 547
Abstract
The progression of type 2 diabetes mellitus (T2DM) is shaped by a multifaceted interplay among genetic, behavioral, and environmental factors, alongside gut dysbiosis. Cinnamon, being abundant in polyphenols and flavonoids, shows significant antioxidant effects. Studies have substantiated that cinnamon contributes to the management [...] Read more.
The progression of type 2 diabetes mellitus (T2DM) is shaped by a multifaceted interplay among genetic, behavioral, and environmental factors, alongside gut dysbiosis. Cinnamon, being abundant in polyphenols and flavonoids, shows significant antioxidant effects. Studies have substantiated that cinnamon contributes to the management of glucose and lipid metabolism. However, the anti-diabetic efficacy of cinnamon is not completely understood. The objective of this research was to clarify the anti-diabetic mechanism associated with cinnamon extract through a combination of chemical profiling, network pharmacology, and in vivo investigations. The results indicated that 32 chemical ingredients, including quercetin, were identified through UPLC-Q-TOF-MS. Network pharmacology revealed that 471 targets related to 14 compounds were screened. The analysis of GO enrichment revealed that the primary pathways were notably enhanced in the metabolism of insulin and glucose. In vivo analyses showed that cinnamon could effectively alleviate hyperglycemia, insulin resistance, and lipid metabolism abnormalities via increased relative abundance of Akkermansia and Ligilactobacillus at the genus level and a decreased Firmicutes/Bacteroidetes ratio at the phylum level. Moreover, cinnamon reduced the serum levels of lipopolysaccharide (LPS) and proinflammatory cytokines (IL-6 and TNF-α) and significantly increased the colon Zonula occludens-1 (ZO-1) and occludin protein levels. It was also observed that cinnamon improved the fecal SCFA levels (acetic, propionic, butyric, valeric and caproic acid), while also modifying the bile acid (BA) profile and increasing the conjugated-to-unconjugated BA ratio. The Western blotting analysis further demonstrated that cinnamon activated intestinal FXR/FGF15 and hepatic PI3K/AKT signaling pathways. In summary, the finding confirmed that cinnamon ameliorated glucose and lipid metabolism disorders by safeguarding the intestinal barrier and modulating the gut microbiota and metabolites, thereby activating intestinal FXR/FGF15 and hepatic PI3K/AKT signaling pathways. Full article
(This article belongs to the Section Biochemistry, Molecular and Cellular Biology)
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16 pages, 2511 KiB  
Article
Screening of High-Yield 2-Phenylethanol Producing Strain from Wild-Type Saccharomyces cerevisiae and Optimization of Fermentation Parameters
by Chenshuo Zhang, Tingwen Fan, Zhichun Wang, Jiamu Yu, Xiaoming Guo, Wei Jiang, Lili Miao and Huaiyi Yang
Foods 2025, 14(14), 2444; https://doi.org/10.3390/foods14142444 - 11 Jul 2025
Viewed by 371
Abstract
2-Phenylethanol (2-PE), an aromatic alcohol with a rose-like fragrance, is widely used in the food, pharmaceutical, and high-end cosmetic industries. In this study, a high-yield 2-PE-producing strain was isolated and identified as Saccharomyces cerevisiae based on morphological characterization and taxonomic identification. Fermentation medium [...] Read more.
2-Phenylethanol (2-PE), an aromatic alcohol with a rose-like fragrance, is widely used in the food, pharmaceutical, and high-end cosmetic industries. In this study, a high-yield 2-PE-producing strain was isolated and identified as Saccharomyces cerevisiae based on morphological characterization and taxonomic identification. Fermentation medium components (carbon and nitrogen sources) were optimized through single-factor experiments in shaking flasks, and fermentation medium with 40 g/L glucose, 5 g/L malt extract, 1.75 g/L corn steep liquor, 2.5 g/L yeast extract, 5 g/L malt extract, 1.75 g/L corn steep liquor was considered suitable for 2-PE production. RT-qPCR results indicated that corn steep liquor activates expression of genes related to the shikimate pathway and Ehrlich pathway (pha2, aro4, aro8, and aro9), thereby promoting the synthesis of 2-PE through these pathways. Excess yeast extract inhibited the expression of aro8 and aro9, while enhancing the expression of tdh3 and adh2, thus promoting the de novo synthesis of 2-PE. Furthermore, fermentation in a 5 L bioreactor was applied to investigate the effects of feeding strategies, inoculum proportion, and pH on 2-PE production. With a pH of 5.5 and10% inoculum proportion, the supplementation of the substrate L-Phe led to a 2-PE production of 4.81 g/L after 24 h of fermentation. Finally, in situ product recovery (ISPR) techniques was applied to alleviate 2-PE cytotoxicity, achieving a production of 6.41 g/L. This process offers a promising strategy for producing 2-PE efficiently and naturally, paving the way for further industrial applications in food, pharmaceutical, and cosmetic sectors. Full article
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20 pages, 9728 KiB  
Article
The Response of the Functional Traits of Phragmites australis and Bolboschoenus planiculmis to Water and Saline–Alkaline Stresses
by Lili Yang, Yanjing Lou and Zhanhui Tang
Plants 2025, 14(14), 2112; https://doi.org/10.3390/plants14142112 - 9 Jul 2025
Viewed by 359
Abstract
Soil saline–alkaline stress and water stress, exacerbated by anthropogenic activities and climate change, are major drivers of wetland vegetation degradation, severely affecting the function of wetland ecosystems. In this study, we conducted a simulation experiment with three water levels and four saline–alkaline concentration [...] Read more.
Soil saline–alkaline stress and water stress, exacerbated by anthropogenic activities and climate change, are major drivers of wetland vegetation degradation, severely affecting the function of wetland ecosystems. In this study, we conducted a simulation experiment with three water levels and four saline–alkaline concentration levels as stress factors to assess eight key functional traits of Phragmites australis and Bolboschoenus planiculmis, dominant species in the salt marsh wetlands in the western region of Jilin province, China. The study aimed to evaluate how these factors influence the functional traits of P. australis and B. planiculmis. Our results showed that the leaf area, root biomass, and clonal biomass of P. australis significantly increased, and the leaf area of B. planiculmis significantly decreased under low and medium saline–alkaline concentration treatments, while the plant height, ramet number, and aboveground biomass of P. australis and the root biomass, clonal biomass, and clonal/belowground biomass ratio of B. planiculmis were significantly reduced and the ratio of belowground to aboveground biomass of B. planiculmis significantly increased under high saline–alkaline concentration treatment. The combination of drought conditions with medium and high saline–alkaline treatments significantly reduced leaf area, ramet number, and clonal biomass in both species. The interaction between flooding water level and medium and high saline–alkaline treatments significantly suppressed the plant height, root biomass, and aboveground biomass of both species, with the number of ramets having the greatest contribution. These findings suggest that the effects of water levels and saline–alkaline stress on the functional traits of P. australis and B. planiculmis are species-specific, and the ramet number–plant height–root biomass (RHR) strategy may serve as an adaptive mechanism for wetland clones to environmental changes. This strategy could be useful for predicting plant productivity in saline–alkaline wetlands. Full article
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20 pages, 5477 KiB  
Article
Genome-Wide Identification of the CtNF-Y Gene Family and Expression Analysis of Different Flower Colours and Different Flowering Stages in Carthamus tinctorius L.
by Jianhang Zhang, Shuwei Qin, Lili Wang, Mengyuan Ma, Wanting Yang, Wenjie Shen, Yaqian Lu, Mingqiang Bao, Meng Zhao, Hongbin Li, Asigul Ismayil and Aiping Cao
Plants 2025, 14(14), 2111; https://doi.org/10.3390/plants14142111 - 9 Jul 2025
Viewed by 356
Abstract
Safflower (Carthamus tinctorius L.) is a plant in the family of Asteraceae, and the dried tubular flowers are used as medicine, which contain active ingredients such as safflower yellow pigment and safflower glycosides. They play important roles in many fields. NF-Y, as [...] Read more.
Safflower (Carthamus tinctorius L.) is a plant in the family of Asteraceae, and the dried tubular flowers are used as medicine, which contain active ingredients such as safflower yellow pigment and safflower glycosides. They play important roles in many fields. NF-Y, as an important transcription factor in plants, regulates a variety of plant life activities. In this study, we identified and analysed 11 CtNF-Y gene family members from safflower for the first time. Their core motifs, which are conserved structural domains, gene structures, and cis-acting elements, are described in this study. In addition, there was good collinearity between safflower CtNF-Y and other species. Protein–protein interaction network analysis showed that the CtNF-YA1 and CtNF-YB subfamilies were the core proteins of the interaction network. Real-time quantitative PCR (qRT-PCR) studies showed that the expression level of the CtNF-Y gene was regulated by safflower flower colour and safflower flowering period. Subcellular localisation results showed that three CtNF-Y proteins were located in the nucleus, the cellular regulatory centre of the plant. This study will provide valuable insights into the selection of key candidate genes in the network of regulatory mechanisms for the formation of safflower flower colour and flowering time. Full article
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31 pages, 5571 KiB  
Article
Resolving Non-Proportional Frequency Components in Rotating Machinery Signals Using Local Entropy Selection Scaling–Reassigning Chirplet Transform
by Dapeng Quan, Yuli Niu, Zeming Zhao, Caiting He, Xiaoze Yang, Mingyang Li, Tianyang Wang, Lili Zhang, Limei Ma, Yong Zhao and Hongtao Wu
Aerospace 2025, 12(7), 616; https://doi.org/10.3390/aerospace12070616 - 8 Jul 2025
Viewed by 290
Abstract
Under complex operating conditions, vibration signals from rotating machinery often exhibit non-stationary characteristics with non-proportional and closely spaced instantaneous frequency (IF) components. Traditional time–frequency analysis (TFA) methods struggle to accurately extract such features due to energy leakage and component mixing. In response to [...] Read more.
Under complex operating conditions, vibration signals from rotating machinery often exhibit non-stationary characteristics with non-proportional and closely spaced instantaneous frequency (IF) components. Traditional time–frequency analysis (TFA) methods struggle to accurately extract such features due to energy leakage and component mixing. In response to these issues, an enhanced time–frequency analysis approach, termed Local Entropy Selection Scaling–Reassigning Chirplet Transform (LESSRCT), has been developed to improve the representation accuracy for complex non-stationary signals. This approach constructs multi-channel time–frequency representations (TFRs) by introducing multiple scales of chirp rates (CRs) and utilizes a Rényi entropy-based criterion to adaptively select multiple optimal CRs at the same time center, enabling accurate characterization of multiple fundamental components. In addition, a frequency reassignment mechanism is incorporated to enhance energy concentration and suppress spectral diffusion. Extensive validation was conducted on a representative synthetic signal and three categories of real-world data—bat echolocation, inner race bearing faults, and wind turbine gearbox vibrations. In each case, the proposed LESSRCT method was compared against SBCT, GLCT, CWT, SET, EMCT, and STFT. On the synthetic signal, LESSRCT achieved the lowest Rényi entropy of 13.53, which was 19.5% lower than that of SET (16.87) and 35% lower than GLCT (18.36). In the bat signal analysis, LESSRCT reached an entropy of 11.53, substantially outperforming CWT (19.91) and SBCT (15.64). For bearing fault diagnosis signals, LESSRCT consistently achieved lower entropy across varying SNR levels compared to all baseline methods, demonstrating strong noise resilience and robustness. The final case on wind turbine signals demonstrated its robustness and computational efficiency, with a runtime of 1.31 s and excellent resolution. These results confirm that LESSRCT delivers robust, high-resolution TFRs with strong noise resilience and broad applicability. It holds strong potential for precise fault detection and condition monitoring in domains such as aerospace and renewable energy systems. Full article
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13 pages, 3859 KiB  
Article
Long-Term Fertilizer-Based Management Alters Soil N2O Emissions and Silicon Availability in Moso Bamboo Forests
by Jie Yang, Kecheng Wang, Jiamei Chen, Lili Fan, Peikun Jiang and Rong Zheng
Agronomy 2025, 15(7), 1647; https://doi.org/10.3390/agronomy15071647 - 7 Jul 2025
Viewed by 380
Abstract
Long-term intensive management practices in Moso bamboo (Phyllostachys edulis) forests, primarily characterized by repeated fertilizer application, tillage, and biomass harvesting, can alter soil nutrient cycling and ecosystem stability. This study aimed to assess how such fertilizer-based management affects soil N2 [...] Read more.
Long-term intensive management practices in Moso bamboo (Phyllostachys edulis) forests, primarily characterized by repeated fertilizer application, tillage, and biomass harvesting, can alter soil nutrient cycling and ecosystem stability. This study aimed to assess how such fertilizer-based management affects soil N2O emission potential and silicon (Si) availability. We collected soil samples (0–20 cm) from bamboo stands subjected to 0–39 years of intensive management and from adjacent natural broad-leaved forests as a reference. The Soil pH, nitrogen forms, nitrification and denitrification potential, and Si concentrations were measured. The results showed significant nitrogen accumulation and progressive soil acidification with increasing management duration. The nitrification and denitrification potentials were 5.7 and 6.0 times higher in the 39-year-old stand compared to unmanaged bamboo. Meanwhile, the available Si decreased by 20.1%, despite stable total Si levels. The available Si showed strong positive correlations with nitrogen forms and transformation rates. These findings highlight the long-term impact of fertilizer-driven bamboo management on soil biogeochemistry and emphasize the need to consider Si dynamics in sustainable nutrient strategies. Full article
(This article belongs to the Special Issue Plant Nutrition Eco-Physiology and Nutrient Management)
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18 pages, 2894 KiB  
Article
Synergistic Effects of Deep Rotary Tillage and Microbial Decomposition Agents on Straw Decomposition, Soil Nutrient Dynamics, and Microbial Communities in Rice Systems
by Xinyue Wang, Jie Huang, Yanting Tan, Lili Yang, Yuanhuan Li, Bing Xia, Hailin Li and Xiaohua Deng
Agriculture 2025, 15(13), 1447; https://doi.org/10.3390/agriculture15131447 - 4 Jul 2025
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Abstract
This study evaluated the synergistic effects of microbial decomposition agents and deep rotary tillage on rice straw decomposition, soil nutrient dynamics, and microbial communities in paddy fields of southern China. A two-factor randomized block experiment was conducted, with straw decomposition dynamics modeled using [...] Read more.
This study evaluated the synergistic effects of microbial decomposition agents and deep rotary tillage on rice straw decomposition, soil nutrient dynamics, and microbial communities in paddy fields of southern China. A two-factor randomized block experiment was conducted, with straw decomposition dynamics modeled using a modified Olson decay model, and microbial communities were assessed via high-throughput sequencing and network analysis. The combined treatment significantly increased the decomposition rate constant, reduced the time for 50% decomposition to 81 days, and enhanced soil nutrient availability, especially total nitrogen, phosphorus, and potassium. Microbial richness, diversity, and network complexity were also improved. Structural equation modeling indicated that nutrient availability, rather than microbial α-diversity, was the main driver of decomposition processes. These findings suggest that integrating microbial agents with deep tillage offers an effective strategy for optimizing straw return, improving soil fertility, and enhancing microbial functional resilience in rice systems. Full article
(This article belongs to the Section Agricultural Soils)
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