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Pathogens

Pathogens is an international, peer-reviewed, open access journal on pathogens and pathogen-host interactions published monthly online by MDPI.

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All Articles (10,032)

  • Article
  • Open Access

Systemic innate immune responses during infant pertussis remain incompletely characterized, particularly in relation to disease severity, vaccination and respiratory viral coinfection. We conducted a prospective observational study of 61 infants younger than 12 months hospitalized with PCR-confirmed pertussis. Seven serum cytokines and chemokines were measured during early hospitalization, and their associations with clinical manifestations, vaccination and viral coinfection were investigated. Correlation analysis and principal component analysis identified a coordinated pro-inflammatory cluster comprising IL-1β, TNF-α, IL-6, IL-8 and CCL3 (PC1), and a distinct component mainly reflecting CXCL10 and IL-10 (PC2). No individual cytokine or composite profile was significantly associated with clinical manifestations after correction for multiple comparisons, although exploratory associations of CXCL10 and PC2 with respiratory distress were observed. Respiratory viral coinfection was independently associated with higher CXCL10 concentrations (2.21-fold increase; 95% CI 1.28–3.82; p = 0.0045; FDR q = 0.032). Prior vaccination and respiratory viral coinfection showed opposite trends in their associations with inflammatory mediators, with vaccination tending to be associated with stronger pro-inflammatory responses. Previously vaccinated infants also had higher anti-pertussis toxin IgG concentrations (p = 0.0006). These findings highlight distinct patterns of systemic immune activation during infant pertussis, influenced by respiratory viral detection and prior immune history, without clear associations with clinical severity.

Pathogens

3 November 2026

Association of age, prior vaccination and respiratory viral coinfection with severe pertussis. Multivariable logistic regression analysis of severe disease, defined as a Pertussis Severity Score (PSS) ≥ 5. Age was modeled per 30-day increase, while prior vaccination (at least one dose) and respiratory viral coinfection were included as binary variables. Points represent adjusted odds ratios (ORs), and horizontal bars indicate 95% confidence intervals (CIs). The vertical dashed line indicates no association (OR = 1). All predictors were included simultaneously in the model.
  • Systematic Review
  • Open Access

Respiratory syncytial virus (RSV) is a leading cause of acute lower respiratory tract infection in infants, but circulating biomarkers for severity stratification remain insufficiently validated. This systematic review evaluated circulating biomarkers associated with acute RSV disease severity in children aged≤ 24 months. PubMed, Web of Science, and Scopus were searched for English-language reports published between 1 January 2016 and 1 March 2026, with the last searches performed on 1 March 2026. Study-level risk of bias was assessed using the Newcastle–Ottawa Scale or the Joanna Briggs Institute checklist, according to study design. Findings were synthesized descriptively using study-level effect estimates and reported severity-discrimination measures. Twenty-four studies contributed 174 extractable comparisons. Biomarker associations varied across populations, age strata, sampling times, and severity definitions, and reproducibility across independent cohorts was limited. In one cohort, fibrinogen and the fibrinogen-to-albumin ratio (FAR) showed large differences between severity groups; FAR had a reported AUC of 0.875. These findings do not establish comparative superiority or external validity. Important limitations include heterogeneous clinical comparisons, limited confounder adjustment, and predominantly single-cohort evidence. Current evidence does not support using FAR, the neutrophil-to-lymphocyte ratio (NLR), or other circulating biomarkers alone to predict subsequent clinical deterioration. Whether these markers add useful information to clinical assessment requires prospective validation. Registration: PROSPERO, CRD420261471336.

Pathogens

2 November 2026

PRISMA 2020 flow diagram of study identification, screening, eligibility assessment, and inclusion in the systematic review. Full-text exclusion reasons were mutually exclusive; each of the 42 excluded reports was assigned to a single category (no separately extractable RSV-only subgroup, n = 13; no severity-related prediction or discrimination analysis, n = 7; only nasal or airway biomarkers, n = 6; ineligible study design, n = 6; no extractable subgroup aged 0–2 years, n = 7; long-term prognosis research, n = 3), and the category counts sum to 42.
  • Article
  • Open Access

Viral nervous necrosis (VNN), caused by betanodaviruses, is a major constraint to marine finfish aquaculture worldwide. This study reports the first detection and molecular characterization of an RGNNV/SJNNV reassortant betanodavirus in farmed gilthead seabream (Sparus aurata) in the Suez Canal basin, Egypt. Four mortality episodes in two adjacent marine hatcheries affected fry from 12 days post-hatching through juveniles of seven months. Affected fish showed nervous signs, and brain histopathology revealed spongiform vacuolation and neurodegeneration. No parasitic or bacterial pathogens were detected. RT-qPCR and conventional RT-PCR detected betanodavirus RNA in clinically affected fry and juveniles and in brains of apparently healthy broodstock. In one hatchery, viral RNA was also detected in incoming well water. Partial RNA1 and RNA2 sequencing of a virus from a single adult fish identified a reassortant strain, designated EGY_Waf25, comprising RGNNV RNA1 and SJNNV RNA2. EGY_Waf25 clustered with Mediterranean and North African reassortant betanodaviruses but formed a distinct branch in RNA1-, RNA2-, and concatenated RNA1/RNA2-based analyses. Genetic distance analyses supported this placement while indicating local differentiation. These findings extend the recognized geographic occurrence of RGNNV/SJNNV reassortants to the Suez Canal basin and identify a potential regional biosecurity risk for Egyptian mariculture. Enhanced surveillance, routine broodstock screening, and water monitoring are recommended.

Pathogens

2 November 2026

Map of the Suez Canal region showing the sampling locations. Sampling sites are indicated by red asterisks. Hatchery positions are approximate; exact locations are withheld to preserve the confidentiality of the participating commercial facilities. ISM423 was reported from the H1-hatchery, while cases W25 and W26 were reported from the H2-hatchery. Both H1 and H2 are fed with underground water. During the preparation of this work, the authors used Claude Opus 5.5. (Anthropic, San Francisco, CA, USA) to draw and annotate this figure from public geospatial datasets. The authors reviewed and verified the output and took full responsibility for the content of the publication.
  • Article
  • Open Access

Parasites impose energetic and physiological costs on their hosts, potentially influencing behavioural time budgets, yet responses may vary among parasite taxa and host sexes. In this study, relationships between parasite burden and activity budgets in free-ranging bighorn sheep (Ovis canadensis) in southwestern Alberta, Canada were investigated. Behavioural observations and fecal samples were collected over seven months, and fecal egg, larval, and oocyst counts were used to quantify infection with multiple gastrointestinal helminth, lungworm, and protozoan taxa. Generalized linear mixed models examined associations between parasite burden and the proportion of time allocated to grazing, rumination, and movement while accounting for age, sex, and parasite-by-sex interactions. Females spent a greater proportion of time grazing than males. Grazing also showed weak evidence of sex-specific associations with lungworm larval counts and Trichuris fecal egg counts. Rumination was associated with a significant interaction between sex and Nematodirus fecal egg counts, indicating that males and females differed in their behavioural responses to this parasite. No predictors were associated with the proportion of time bighorn sheep spent moving. Overall, behavioural responses to parasitism showed stronger evidence for sex-dependent relationships than for consistent main effects of parasite abundance. These findings highlight the complexity of behavioural responses to parasitism in wild ungulates and suggest that host sex may influence how parasite infections are reflected in time allocation to different activities.

Pathogens

2 November 2026

Boxplot showing the median, first quartile (25th percentile), and third quartile (75th percentile) of the proportion of time female (F) and male (M) bighorn sheep spent grazing.

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Pathogens - ISSN 2076-0817