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Microorganisms publishes Special Issues to create collections of papers on specific topics, with the aim of building a community of authors and readers to discuss the latest research and develop new ideas and research directions. Special Issues are led by Guest Editors, who are experts on the topic and all Special Issue submissions follow MDPI's standard editorial process. The journal’s Editor-in-Chief and/or designated Editorial Board Member will oversee Guest Editor appointments and Special Issue proposals, checking their content for relevance and ensuring the suitability of the material for the journal. The papers published in a Special Issue will be collected and displayed on a dedicated page of the journal’s website. Further information on MDPI's Special Issue policies and Guest Editor responsibilities can be found here. For any inquiries related to a Special Issue, please contact the Editorial Office.

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Antimicrobial and Anti-Biofilm Potentials of Plant Extracts, Natural Products and Their Formulations

edited by

Valentina Puca

and

Marilisa Pia Dimmito

submission deadline 15 Oct 2025 | 5 articles | Viewed by 17832 | Submission Open

Keywords: antimicrobials; natural products; anti-biofilm strategies; anti-microbial resistance; drug delivery; formulations

(This special issue belongs to the Section Antimicrobial Agents and Resistance)

Understanding the Interactions Between HIV and Other Infections and Their Impact on Immune Function

edited by

Justyna Dominika Kowalska

and Botond Lakatos

submission deadline 15 Oct 2025 | 3 articles | Viewed by 7845 | Submission Open

Keywords: antimicrobials; natural products; anti-biofilm strategies; anti-microbial resistance; drug delivery; formulations

(This special issue belongs to the Section Medical Microbiology)

Bacterial Communication: The Quorum Sensing Paradigm

edited by Ritika Gupta

submission deadline 15 Oct 2025 | 2 articles | Viewed by 1864 | Submission Open

Keywords: communication; crosstalk; virulence; biofilms; autoinducers; therapeutic targets; infectious diseases

(This special issue belongs to the Section Biofilm)

The Molecular Mechanisms Regulating Stress-Adaptive Responses in Bacteria

edited by

Ewa Laskowska

and

Arumugam Priya

submission deadline 15 Oct 2025 | Viewed by 186 | Submission Open

Keywords: biofilms; strategies to combat antimicrobial resistance; bacterial stress adaptation

(This special issue belongs to the Section Antimicrobial Agents and Resistance)

Molecular Mechanisms of Algal and Microbial Adaptation to Extreme Temperature Conditions

edited by

Senjie Lin

and

Tangcheng Li

submission deadline 30 Oct 2025 | Viewed by 187 | Submission Open

Keywords: algae; molecular mechanisms; genomic; adaptation; plasticity; extremophiles; thermophilic; psychrophilic; temperature effects; global warming

(This special issue belongs to the Section Environmental Microbiology)

Gut Microbiota, Diet, and Gastrointestinal Cancer

edited by

Marco Cintoni

and Flavio De Maio

submission deadline 31 Oct 2025 | 9 articles | Viewed by 28984 | Submission Open

Keywords: gut microbiota; diet; nutrition; gastrointestinal cancer; colorectal cancer; probiotics; prebiotics; postbiotics; radiotherapy; chemotherapy

(This special issue belongs to the Section Gut Microbiota)

Borreliosis and Other Tick-Borne Diseases in the Northern and Southern Hemispheres

edited by

Giusto Trevisan

submission deadline 31 Oct 2025 | 8 articles | Viewed by 25225 | Submission Open

Keywords: lyme disease; borrelia; diagnosis; tick-borne infections; relapsing fever

(This special issue belongs to the Section Medical Microbiology)

Advances in Host-Gut Microbiota

edited by

Jean-Paul Motta

and Marion Garofalo

submission deadline 31 Oct 2025 | 10 articles | Viewed by 23276 | Submission Open

Keywords: host– microbiota interactions; infectious and inflammatory gut disorders; microbiota ageing; intestinal epithelium

(This special issue belongs to the Section Gut Microbiota)

Bacteremia and Sepsis

edited by

Miquel Pujol

submission deadline 31 Oct 2025 | 7 articles | Viewed by 20558 | Submission Open

Keywords: bacteremia; sepsis; bloodstream infection; virulence factors; clinical microbiology; surveillance

(This special issue belongs to the Section Medical Microbiology)

Infectious Diseases: New Approaches to Old Problems, 3rd Edition

edited by

Monica Cartelle Gestal

Eva Torres-Sangiao

and

Nelson C. Soares

submission deadline 31 Oct 2025 | 6 articles | Viewed by 14963 | Submission Open

Keywords: infectious diseases; antibiotic resistance; vaccines and therapies; biomarkers and diagnosis; mass spectrometry; immunomodulation; inflammation; systems biology; metabolomics

(This special issue belongs to the Section Public Health Microbiology)

Microbial Safety of Fermented Foods, 2nd Edition

edited by

Marta Laranjo

submission deadline 31 Oct 2025 | 2 articles | Viewed by 14577 | Submission Open

(This special issue belongs to the Section Food Microbiology)

The Molecular Epidemiology of Infectious Diseases

edited by Jonathan Hon-kwan Chen

submission deadline 31 Oct 2025 | 8 articles | Viewed by 12037 | Submission Open

Keywords: molecular epidemiology; infectious diseases; outbreak investigations; transmission; genotyping; disease control

(This special issue belongs to the Section Public Health Microbiology)

Advancements in Pathogenic Bacteria: Detection, Genomic Analysis, and Antibiotic Resistance

edited by Vlademir Vicente Cantarelli

submission deadline 31 Oct 2025 | 9 articles | Viewed by 11109 | Submission Open

Keywords: bacterial infections; immunocompromised patients; identification methods; mass spectrometry; genomic analysis; antimicrobial resistance (AMR); faster detection methods; pathogenic bacteria; new bacterial pathogens

(This special issue belongs to the Section Medical Microbiology)

The Microbiome in Ecosystems

edited by

Bong-Soo Kim

submission deadline 31 Oct 2025 | 9 articles | Viewed by 9287 | Submission Open

Keywords: microbiome; ecosystems; microbe– microbe interactions; microbe– host interactions; microbe– environment interactions

(This special issue belongs to the Section Microbiomes)

Research on Antimicrobial Activity of Natural Products, Second Edition

edited by

Rosário Martins

Maria De Fátima Carvalho

and

Mónica Vieira

submission deadline 31 Oct 2025 | 6 articles | Viewed by 7648 | Submission Open

Keywords: antimicrobial activity; bacteria; cyanobacteria; fungi; antibiotic resistance; natural compounds

(This special issue belongs to the Section Antimicrobial Agents and Resistance)

Ecological Distribution, Biogeochemical Function, and Pathogenicity to Marine Organisms of Vibrio spp.

edited by Xiaolei Wang

submission deadline 31 Oct 2025 | 3 articles | Viewed by 6513 | Submission Open

Keywords: Vibrio spp.; pathogenicity; ecology; marine animals health; marine ecosystems

(This special issue belongs to the Section Environmental Microbiology)

Recent Research on Antimicrobial Stewardship

edited by Erika Asperges and Pietro Valsecchi

submission deadline 31 Oct 2025 | 3 articles | Viewed by 6405 | Submission Open

Keywords: antibiotic resistance; antifungal resistance; antiviral resistance; resistant malaria; MDR tubercolosis; antimicrobial stewardship

(This special issue belongs to the Section Antimicrobial Agents and Resistance)

Microorganisms in Silage

edited by

Musen Wang

Marcia De Oliveira Franco

Qing Zhang

Siran Wang

and

Chunsheng Bai

submission deadline 31 Oct 2025 | 6 articles | Viewed by 6254 | Submission Open

Keywords: ensiling; microbial community; microbial contamination; functional lactic acid bacteria; fermented feed

(This special issue belongs to the Section Food Microbiology)

Microbial Biotechnologies and Microorganism Interactions for Sustainable Agriculture

edited by

Dario Rafael Olicón-Hernández

and

Guerra-Sanchez Guadalupe

submission deadline 31 Oct 2025 | 6 articles | Viewed by 6191 | Submission Open

Keywords: microbial biotechnologies; sustainable agriculture; biofertilizers; biopesticides; bioformulations; microbial interactions; biocontrol mechanisms; ecosystem health; omics technologies; plant growth promotion

(This special issue belongs to the Section Microbial Biotechnology)

Parasitic Diseases in Husbandry Animals and Relevant Antiparasitic Treatment

edited by

Lan He

and

Xiaofei Shang

submission deadline 31 Oct 2025 | 3 articles | Viewed by 5816 | Submission Open

Keywords: parasities; epidemiology; pathogenic characteristic; antiparasitic agents; mechanism

(This special issue belongs to the Section Veterinary Microbiology)

Food Microbiota in the Center Place: Detection, Antibiotic Resistance, Biofilms, the Impact on Hosts and Targeted Interventions

edited by Hua Wang and Atin Datta

submission deadline 31 Oct 2025 | 3 articles | Viewed by 5557 | Submission Open

Keywords: food microbiota; detection; antibiotic resistance; biofilms

(This special issue belongs to the Section Food Microbiology)

Molecular Mechanism of Microbial Heat Adaptation

edited by Binguang Ma

submission deadline 31 Oct 2025 | 3 articles | Viewed by 5524 | Submission Open

Keywords: microbial genomics; molecular networks; protein structures; temperature adaptation; gene regulation

(This special issue belongs to the Section Molecular Microbiology and Immunology)

Microbes at the Root of Solutions for Anthropocene Challenges

edited by

Eleonora Rolli

and

Rachele Isticato

submission deadline 31 Oct 2025 | 3 articles | Viewed by 5317 | Submission Open

Keywords: plant– microbe interactions; bioremediation; plant– soil feedback; holobiont; sustainability; biodiversity

(This special issue belongs to the Section Environmental Microbiology)

Advances in Microbiologically Influenced Corrosion: Mechanisms, Microbial Communities, Early Detection and Control Strategies

edited by Yingchao Li and

Laura L. Machuca

submission deadline 31 Oct 2025 | 5 articles | Viewed by 4998 | Submission Open

Keywords: biofilms; corrosion; microbial communities; microbiologically influenced corrosion (MIC); biofilm inhibition and control; early detection

(This special issue belongs to the Section Environmental Microbiology)

Oral Microbiota: Diseases, Health, and Beyond

edited by

Federica Di Spirito

and

Maria Pia Di Palo

submission deadline 31 Oct 2025 | 3 articles | Viewed by 4988 | Submission Open

Keywords: oral microbiota; oral bacteria; oral viruses; oral fungi; oral protozoa; oral health; oral disease

(This special issue belongs to the Section Medical Microbiology)

Human Gut Microbiome, Diets and Health

edited by Miriam Fernandes and Carolina Dos Anjos

submission deadline 31 Oct 2025 | 2 articles | Viewed by 4688 | Submission Open

Keywords: gut microbiota; human nutrition; diet; probiotics and prebiotics; fermented food; gut health; metabolites; microbiota– host interactions

(This special issue belongs to the Section Gut Microbiota)

Novel Antimicrobial Strategies

edited by

Evandro Watanabe

, Denise De Andrade and

Cláudia Helena Silva-Lovato

submission deadline 31 Oct 2025 | 3 articles | Viewed by 4465 | Submission Open

Keywords: anti-infective agents; bacteriophages; biocompatible materials; biofilms; biological products; multidrug resistance; environmental health; equipment contamination; infections; materials testing; volatile oils; probiotics; technology

(This special issue belongs to the Section Antimicrobial Agents and Resistance)

Shiga Toxin-Producing Escherichia coli: Diagnostics, Characterization, and Pathogenesis

edited by Xiangning Bai

submission deadline 31 Oct 2025 | 3 articles | Viewed by 4127 | Submission Open

Keywords: Shiga toxin-producing Escherichia coli; diagnostics; characterization; pathogenetic mechanism; virulence; disease severity; diarrhea; hemolytic uremic syndrome; bacteria-host interactions

(This special issue belongs to the Section Molecular Microbiology and Immunology)

Detection and Identification of Emerging and Re-Emerging Pathogens

edited by Xing-Yi Ge and Ye Qiu

submission deadline 31 Oct 2025 | 3 articles | Viewed by 3950 | Submission Open

Keywords: virus; pathogen discovery; genomic epidemiology; intra- and cross-species transmission; zoonosis; evolution and phylogeny

(This special issue belongs to the Section Medical Microbiology)

Environmental Microorganisms as a Risk Factor of Healthcare-Associated Infections—Prevention Measures and Epidemiology

edited by

Anna Różańska

submission deadline 31 Oct 2025 | 2 articles | Viewed by 3826 | Submission Open

Keywords: healthcare-associated infections; hospital cleaning; modern disinfection; infection etiology; infection prevention

(This special issue belongs to the Section Public Health Microbiology)

Earth Systems: Shaped by Microbial Life

edited by

Panagiota Stathopoulou

submission deadline 31 Oct 2025 | 3 articles | Viewed by 3610 | Submission Open

Keywords: microbial diversity; extreme habitats; novel microorganisms; bioprospecting; anthropogenic impact; dark matter

(This special issue belongs to the Section Environmental Microbiology)

Novel Nanomaterials with Antimicrobial Activity

edited by

Nicole Levi

submission deadline 31 Oct 2025 | 1 articles | Viewed by 3579 | Submission Open

Keywords: nanoparticles; nanostructured materials; wound healing; biofilms; antimicrobial; intracellular pathogens

(This special issue belongs to the Section Antimicrobial Agents and Resistance)

Gut Microbiota: Metagenomics to Study Ecology, 2nd Edition

edited by

Lifeng Zhu

submission deadline 31 Oct 2025 | 4 articles | Viewed by 3421 | Submission Open

Keywords: metagenomics; ecology; multi-omics; metagenomic assembled genomes; function; host– microbe interactions; behavior; local adaptation; biodiversity conservation

(This special issue belongs to the Section Gut Microbiota)

Viral Proteases in Viral Infection and Drug Development

edited by Ye Qiu and Xing-Yi Ge

submission deadline 31 Oct 2025 | 2 articles | Viewed by 2859 | Submission Open

Keywords: virus; protease; proteolysis; immunity; virus– host interaction; pathogenic mechanism; antiviral drug; protease inhibitor

(This special issue belongs to the Section Virology)

Intestinal Dysbiosis: 2nd Edition

edited by

Giuseppe Merra

submission deadline 31 Oct 2025 | 1 articles | Viewed by 2794 | Submission Open

Keywords: gut flora; intestinal flora; dysbiosis; inflammatory bowel diseases; leaky gut

(This special issue belongs to the Section Gut Microbiota)

The Microbiome in Fermented Tea

edited by Lizeng Cheng

submission deadline 31 Oct 2025 | 2 articles | Viewed by 2777 | Submission Open

Keywords: dark tea; tea-derived microbes; microbial conversion; quality improvement; mycotoxin risk

(This special issue belongs to the Section Food Microbiology)

Advances in Techniques and Analyses to Characterize Host-Specific and Environmental Microbiomes

edited by

Carl Gordon Johnston

and

Tasha M. Santiago-Rodriguez

submission deadline 31 Oct 2025 | 1 articles | Viewed by 2085 | Submission Open

Keywords: bioinformatics; metagenomics; metatranscriptomics; microbiome; omics

(This special issue belongs to the Section Microbiomes)

Role of Dietary Nutrients in the Modulation of Gut Microbiota

edited by

Inês Brandão

and Joana Ferreira-Gomes

submission deadline 31 Oct 2025 | 1 articles | Viewed by 1974 | Submission Open

Keywords: gut microbiota; diet; immunomodulation; dietary intervention studies

(This special issue belongs to the Section Gut Microbiota)

Advances in Microbial Surfactants: Production and Applications (2nd Edition)

edited by

Marcia Nitschke

and

Xanel Vecino

submission deadline 31 Oct 2025 | 2 articles | Viewed by 1649 | Submission Open

Keywords: biosurfactants; agroindustrial wastes; antimicrobial activity; bioremediation; biofilm; nanotechnology; glycolipid; lipopeptide

(This special issue belongs to the Section Microbial Biotechnology)

Enhancing Gut Health: Early-Life Microbiome Manipulation in Poultry Through Probiotics

edited by

Khaled Abdelaziz

, Alexander Yitbarek and Mohammadali Alizadeh

submission deadline 31 Oct 2025 | 1 articles | Viewed by 1631 | Submission Open

Keywords: poultry probiotics; poultry gut microbiome; beneficial bacterial populations

(This special issue belongs to the Section Veterinary Microbiology)

Bacterial Motility

edited by

Rama Bansil

submission deadline 31 Oct 2025 | 1 articles | Viewed by 1618 | Submission Open

Keywords: bacterial movement; bacterial motility; technological and biomedical applications; bacteria motors; chemotaxis; swarming motility; hydrodynamics of bacteria swimming mechanisms; biomimetic swimmers

(This special issue belongs to the Section Molecular Microbiology and Immunology)

Soil Microbial Carbon/Nitrogen/Phosphorus Cycling: 2nd Edition

edited by Dan Xiao and Yinhang Xia

submission deadline 31 Oct 2025 | 2 articles | Viewed by 1533 | Submission Open

Keywords: soil microbiome; nutrient cycling; soil micro-food web; land use change; ecosystem restoration; agricultural management

(This special issue belongs to the Section Environmental Microbiology)

Plant-Algae-Microbe Interactions and Beyond: Never Alone, Always Together

edited by

Olga Blifernez-Klassen

submission deadline 31 Oct 2025 | 2 articles | Viewed by 1449 | Submission Open

Keywords: microorganisms; algae; microalgae; plant– algae– microbe interactions; biotechnology; wastewater/soil remediation; ecosystems

(This special issue belongs to the Section Microbial Biotechnology)

Human Infectious Diseases, Second Edition

edited by

Eleonora Cella

submission deadline 31 Oct 2025 | 1 articles | Viewed by 1413 | Submission Open

Keywords: human; infectious diseases; public health

(This special issue belongs to the Section Public Health Microbiology)

Veterinary Microbiology and Immunology

edited by Qihui Luo

submission deadline 31 Oct 2025 | 2 articles | Viewed by 1336 | Submission Open

Keywords: animal; metabolic diseases; infectious diseases; pathogenesis; host-pathogen interactions; microbiome

(This special issue belongs to the Section Veterinary Microbiology)

Molecular Epidemiology, Virulence and Drug Resistance Mechanisms of Bacteria

edited by

Katarina Novović

submission deadline 31 Oct 2025 | 1 articles | Viewed by 947 | Submission Open

Keywords: bacterial epidemiology; virulence; antimicrobial resistance; clinical microbiology; multidrug resistant bacteria; global clones

(This special issue belongs to the Section Molecular Microbiology and Immunology)

Foodborne Pathogens, Zoonotic Agents and Dairy Product Safety

edited by Lelde Grantina-Ievina

submission deadline 31 Oct 2025 | Viewed by 940 | Submission Open

Keywords: foodborne pathogens; zoonotic diseases; dairy products; unpasteurized milk; Coxiella burnetii; Campylobacter; Salmonella; Listeria monocytogenes; Shiga-toxin-producing Escherichia coli; Shigella

(This special issue belongs to the Section Food Microbiology)

Oral Bacteria, Viruses, and Fungi: Oral Health, Disease, and Systemic Links

edited by

Maria Pia Di Palo

Federica Di Spirito

and Nicoletta Capuano

submission deadline 31 Oct 2025 | 1 articles | Viewed by 683 | Submission Open

Keywords: oral microbiota; host– microbe interactions; antimicrobial resistance; therapeutic approaches; probiotics

(This special issue belongs to the Section Medical Microbiology)

Combating Antimicrobial Resistance: Innovations and Strategies, Second Edition

edited by

Vasiliki Koumaki

submission deadline 31 Oct 2025 | 1 articles | Viewed by 637 | Submission Open

Keywords: antimicrobial agents; antimicrobial resistance; antimicrobial stewardship

(This special issue belongs to the Section Antimicrobial Agents and Resistance)

Parasitic Infection and Host Immunity, 3rd Edition

edited by

Célio Geraldo Freire-de-Lima

and

Debora Decote-Ricardo

submission deadline 31 Oct 2025 | 1 articles | Viewed by 368 | Submission Open

Keywords: infectious diseases; parasite infection; host-parasite interaction; immunomodulation; immunopathology; epidemiology

(This special issue belongs to the Section Medical Microbiology)

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