Challenges in Cannabis sativa: Breeding and Secondary Metabolite Synthesis

A special issue of International Journal of Plant Biology (ISSN 2037-0164). This special issue belongs to the section "Plant Biochemistry and Genetics".

Deadline for manuscript submissions: 30 June 2025 | Viewed by 1031

Special Issue Editor


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Guest Editor
Unidad de Estudios Agropecuarios (UDEA), Instituto Nacional de Tecnología Agropecuaria (INTA), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Instituto de Fisiología y Recursos Genéticos Vegetales (IFRGV), Centro de Investigaciones Agropecuarias (CIAP)—INTA, Córdoba, Argentina
Interests: plant biotechnology; plant reproduction; plant genetics; plant breeding

Special Issue Information

Dear Colleagues,

The synthesis of cannabinoids and terpenes, and its use in medicinal applications, affects the medicinal and aromatic properties of plants and is influenced by genetic and environmental factors. Ensuring a consistent metabolite profile is crucial for pharmaceutical applications but remains difficult due to environmental variability and complex metabolic networks. Cannabis sativa faces significant challenges related to genetic improvement, the synthesis of secondary metabolites, and commercial regulation, limiting its applications. One major obstacle is the limited understanding of its complex genetic architecture. Breeding programs aim to enhance traits such as the cannabinoid content, pest resistance, and environmental adaptability. However, its genetic variability is poorly characterized due to historical legal restrictions, complicating the development of elite cultivars. Molecular tools such as genomic selection and CRISPR-based technologies remain in their early stages, hindered by regulatory and technical barriers. Addressing these challenges requires a multidisciplinary approach, including the use of high-quality genomic sequencing to understand genetic diversity and identify the genes associated with valuable traits. Molecular breeding tools such as genomic selection, marker-assisted selection, and CRISPR-Cas9 should be implemented alongside the establishment of comprehensive germplasm banks to ensure diverse resources for breeding. Detailed studies on biosynthetic pathways should focus on the identification of key enzymes and regulatory elements, while synthetic biology tools could be employed to engineer microbial systems for the scalable production of cannabinoids and terpenes. Advanced cultivation techniques, such as precision agriculture and indoor farming, could minimize environmental variability and standardize metabolite profiles. Alternative methods, such as plant cell cultures or hairy root systems, could also aid in producing valuable metabolites.  This Special Issue aims to collect original articles and reviews that provide molecular insights regarding endocannabinoid (and terpenes) systems and the impact of physiological and pathological stresses on the production of secondary metabolites in medical cannabis, contributing to breeding and translational research via the application of preclinical and clinical data.

Dr. Mariana Quiroga
Guest Editor

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Keywords

  • cannabis genetics 
  • secondary metabolites 
  • molecular breeding 
  • endocannabinoid system

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Published Papers (2 papers)

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Research

15 pages, 1525 KiB  
Article
Cannabis sativa L. Miniature Inverted-Repeat Transposable-Element Landscapes in Wild-Type (JL) and Domesticated Genome (CBDRx)
by Mariana Quiroga, Clara Crociara, Esteban Schenfeld, Franco Daniel Fernández, Juan Crescente, Leonardo Vanzetti and Marcelo Helguera
Int. J. Plant Biol. 2025, 16(2), 40; https://doi.org/10.3390/ijpb16020040 - 25 Mar 2025
Viewed by 355
Abstract
Cannabis sativa L. is a globally cultivated plant with significant industrial, nutritional, and medicinal value. Its genome, comprising nine autosomes and sex chromosomes (X and Y), has been extensively studied, particularly in the context of precise breeding for specific enduses. Recent advances have [...] Read more.
Cannabis sativa L. is a globally cultivated plant with significant industrial, nutritional, and medicinal value. Its genome, comprising nine autosomes and sex chromosomes (X and Y), has been extensively studied, particularly in the context of precise breeding for specific enduses. Recent advances have facilitated genome-wide analyses through platforms like the NCBI Comparative Genome Viewer (CGV) and CannabisGDB, among others, enabling comparative studies across multiple Cannabis genotypes. Despite the abundance of genomic data, a particular group of transposable elements, known as miniature inverted-repeat transposable elements (MITEs), remains underexplored in Cannabis. These elements are non-autonomous class II DNA transposons characterized by high copy numbers and insertion preference in non-coding regions, potentially affecting gene expression. In the present study, we report the sequence annotation of MITEs in wild-type and domesticated Cannabis genomes obtained using the MITE Tracker software. We also develop a simple and innovative protocol to identify genome-specific MITE families, offering valuable tools for future research on marker development focused on important genetic variation for breeding in Cannabis sativa. Full article
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13 pages, 927 KiB  
Article
Integrating Sustainable Cultivation Practices and Advanced Extraction Methods for Improved Cannabis Yield and Cannabinoid Production
by Theerayut Thawonkit, Nednapa Insalud, Rapeephun Dangtungee and Prakash Bhuyar
Int. J. Plant Biol. 2025, 16(2), 38; https://doi.org/10.3390/ijpb16020038 - 21 Mar 2025
Viewed by 561
Abstract
The rising global demand for medicinal cannabis necessitates the optimization of cultivation, harvesting, and extraction techniques to maximize cannabinoid yield and purity. This study investigates the Foi Thong Phu Pha Yon strain under controlled environmental conditions, evaluating the effects of temperature, humidity, CO [...] Read more.
The rising global demand for medicinal cannabis necessitates the optimization of cultivation, harvesting, and extraction techniques to maximize cannabinoid yield and purity. This study investigates the Foi Thong Phu Pha Yon strain under controlled environmental conditions, evaluating the effects of temperature, humidity, CO2 concentration, and light exposure on plant growth and cannabinoid biosynthesis. A total of 170 seeds were germinated, with an 85% germination success rate, and various growth strategies, including soil composition, nutrient application, and irrigation methods, were tested to determine the most effective approach. The research findings indicate that vegetative growth was optimal at 27 °C, 70% humidity, and 1200 ppm CO2 while flowering required a reduced temperature (22 °C), lower humidity (50%), and elevated CO2 levels (1900 ppm) to enhance cannabinoid production and prevent disease. Furthermore, harvest timing significantly influenced CBD yield, with peak cannabinoid content observed when 80% of trichomes were cloudy white. Over two growing cycles, this study produced 43,200 g of fresh buds, resulting in 7560 g of dried cannabis buds. The extraction process, utilizing dynamic maceration with 95% ethanol, followed by winterization and chromatography, yielded 2343.60 g of cannabis extract, including 589.68 g of CBD, with an average purity of 86.599%. Advanced techniques such as flash chromatography and distillation further refined the CBD isolate, ensuring pharmaceutical-grade quality. These findings highlight the effectiveness of precise environmental control, strategic harvesting, and advanced extraction methodologies in optimizing cannabis production. This research provides valuable insights for agricultural researchers, policymakers, and the pharmaceutical industry, supporting sustainable cultivation practices and improved product quality in the expanding medicinal cannabis market. Full article
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