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Integrative Omics Strategies for Biomarker Discovery and Mechanistic Insights into Disease

A special issue of International Journal of Molecular Sciences (ISSN 1422-0067). This special issue belongs to the section "Molecular Informatics".

Deadline for manuscript submissions: 30 September 2026 | Viewed by 1358

Editor


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Guest Editor
Department of Surgery, UT Southwestern Medical Center, Dallas, TX 75390, USA
Interests: cell death; drug resistance; post-translational modification; metabolism; immunity

Special Issue Information

Dear Colleagues,

Recent advances in high-throughput technologies have enabled a systems-level understanding of the molecular complexity underlying human diseases. In particular, integrative omics strategies—encompassing genomics, transcriptomics, proteomics, phosphoproteomics, and metabolomics—have become powerful tools for uncovering novel disease mechanisms, identifying predictive biomarkers, and guiding therapeutic interventions. This Special Issue will focus on innovative studies that combine multiple omics layers to unravel the molecular underpinnings of diseases, with a special emphasis on cancer and therapy resistance. We welcome original research papers and reviews that employ integrative omics approaches to discover new regulatory networks, define cell-state transitions, identify druggable targets, or develop computational frameworks for biomarker prioritization. Studies addressing disease-specific signaling pathways, tumor heterogeneity, immune responses, and therapy-induced adaptations are particularly encouraged, as well as contributions that leverage patient-derived models or clinical datasets to provide translational insights.

Dr. Xinxin Song
Guest Editor

Manuscript Submission Information

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Keywords

  • integrative omics
  • biomarker discovery
  • cancer signaling networks
  • drug resistance
  • phosphoproteomics
  • multi-omics integration
  • systems biology
  • translational research

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Published Papers (1 paper)

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Research

13 pages, 1706 KB  
Article
Chios Mastic Gum Extract Enhances Antioxidant Defense in Zebrafish
by Pelagia Anastasiadou, Martina Samiotaki, Theoni Margaritopoulou, Kyriaki Machera and Konstantinos M. Kasiotis
Int. J. Mol. Sci. 2025, 26(23), 11338; https://doi.org/10.3390/ijms262311338 - 24 Nov 2025
Viewed by 870
Abstract
Chios mastic gum (CMG), derived from the resin of the Pistacia lentiscus has long been considered a natural remedy in the Mediterranean region. Its anti-inflammatory and antioxidant properties have garnered increasing attention from scientists and consumers over recent decades. While substantial evidence supports [...] Read more.
Chios mastic gum (CMG), derived from the resin of the Pistacia lentiscus has long been considered a natural remedy in the Mediterranean region. Its anti-inflammatory and antioxidant properties have garnered increasing attention from scientists and consumers over recent decades. While substantial evidence supports CMG’s efficacy in preventing and treating common health disorders and its potential as a cancer cell inhibitor, the underlying molecular mechanisms remain poorly understood. In this study, we utilized zebrafish embryos as a model organism to identify molecular pathways modulated by CMG treatment. Embryos were exposed to non-toxic CMG concentrations for 3 to 96 h post-fertilization. LC-HRMS proteomics, combined with enrichment analysis, revealed oxidative phosphorylation (OxPhos), electron transport chain (ETC), and tricarboxylic acid cycle (TCA) as main processes. The latter highlights the benefits of CMG administration in energy generation and cytoskeletal integrity. From the plethora of identified proteins, hierarchical clustering revealed three main antioxidant proteins as upregulated, namely copper-zinc superoxide dismutase, thioredoxin-disulfide reductase, and catalase, confirming the contribution of CMG to the enhancement of zebrafish’s antioxidant defense. Full article
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