Exploiting Liabilities in Mechanism of DNA Repair for Cancer Therapy

A special issue of Cancers (ISSN 2072-6694). This special issue belongs to the section "Molecular Cancer Biology".

Deadline for manuscript submissions: 31 July 2025 | Viewed by 3287

Special Issue Editors


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Guest Editor
Department of Biochemistry and Molecular Biology, Louisiana State University Health Shreveport, Shreveport, LA 71103, USA
Interests: Hippo pathway in cancer; DNA repair; DDR; cancer

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Co-Guest Editor
Institute of Biosciences and Bioresources, Consiglio Nazionale delle Ricerche, Naples, 80131, Italy
Interests: DNA replication; PCR; gene expression; molecular biology

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Co-Guest Editor
Institute of Biosciences and Bioresources, Consiglio Nazionale delle Ricerche, Naples, 80131, Italy
Interests: molecular mechanisms of DNA replication; recombinational repair in Archaea

Special Issue Information

Dear Colleagues,

In recent times, seems to have been a great output of information on both the mechanisms of DNA repair and damage response, which has also led to the identification of novel strategies to individualized targeting of malignant cells by exploiting their intrinsic liabilities in such pathways.  This has resulted in novel clinical approaches to radio- and chemotherapy.

Radiotherapy and most forms of chemotherapy aim to inflict unrecoverable damage to DNA to eliminate malignant cells.  The central tenet of the strategy is that cancer cells, owing to their dysregulated proliferation capacity, should be much more susceptible to incurring the lethal genomic-altering effects of such therapies.  In practice, many malignant cells are more resistant to such therapies than the normal cells in many organs, or can become so, rendering these therapies wholly unactionable. To counter this, much effort has been dedicated to combating the common phenomenon of MDR in order to increase the targeted effectiveness of chemotherapy and increase the localized concentration of the drugs within the tumors.  Somewhat more recently, significantly more efforts have been dedicated to enhancing the damage inflicted by radio- and chemotherapies by interfering with the mechanisms of the DNA repair process itself, after the realization that many cancer cells have intrinsic liabilities in these, for example, by their propensity of inactivating checkpoint regulators or pro-apoptotic functions that are normally meant to curtail their unconstrained replication.  This has led to a renewed interest in the DNA damage repair processes to unveil specific liabilities that can be therapeutically targeted.  Perhaps the most famous example of this has been the advent of PARPis to target, via synthetic lethality, the most serious form of DNA damage: DSBs.  These can sometimes be repaired via two main processes: HRR (when a sister chromatid donor is available for recombinational repair) and NHEJ (a simpler but less precise process of rejoining the broken ends).  Frequently, cancer cells have reduced ability to repair DSBs via HRR, a phenomenon first described in BRCA-deficient cells and thus since known as BRCAness to encompass other deficient gene products involved in the process.  While such cells can often repair the DSBs (that can be induced by radio- and chemotherapy) via several alternative NHEJ mechanisms leading to their survival, if the NHEJ repair process is also targeted by therapy, e.g., by PARPis, this will result in what is known as a synthetic lethal outcome, whereby a second loss of function cannot be survived.  While this example has proven to be remarkably effective, at least for a significant DFS period for many types of cancers, it is certainly not a unique target, as much research has revealed many more liabilities in the DNA repair processes or in the DDR, which this special series aims to collect and display.

For this Special Issue, original research articles and reviews are welcome. Research areas may include (but are not limited to) the following: mechanisms of DNA repair or damage response (DDR); specific liabilities of cancer cells when compared to normal tissues in the same areas; tumor suppressors related to DNA repair of DDR; and mechanisms of adaptation to persistent DNA damaging agents.

We look forward to receiving your contributions.

Dr. Arrigo De Benedetti
Dr. Mariarita de Felice
Dr. Mariarosaria de Falco
Guest Editors

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Keywords

  • mechanisms of DNA repair
  • DDR
  • targeted radio- and chemotherapies
  • mechanisms of genotoxins tolerance/resistance
  • synthetic lethality

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Published Papers (2 papers)

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Research

17 pages, 1768 KiB  
Article
DNA Damage Response Network and Intracellular Redox Status in the Clinical Outcome of Patients with Lung Cancer
by Dimitra Mavroeidi, Anastasia Georganta, Dimitra T. Stefanou, Christina Papanikolaou, Konstantinos N. Syrigos and Vassilis L. Souliotis
Cancers 2024, 16(24), 4218; https://doi.org/10.3390/cancers16244218 - 18 Dec 2024
Cited by 2 | Viewed by 864
Abstract
Background/Objectives: DNA damage response (DDR) is a network of molecular pathways associated with the pathogenesis and progression of several diseases, as well as the outcome of chemotherapy. Moreover, the intracellular redox status is essential for maintaining cell viability and controlling cellular signaling. [...] Read more.
Background/Objectives: DNA damage response (DDR) is a network of molecular pathways associated with the pathogenesis and progression of several diseases, as well as the outcome of chemotherapy. Moreover, the intracellular redox status is essential for maintaining cell viability and controlling cellular signaling. Herein, we analyzed DDR signals and redox status in peripheral blood mononuclear cells (PBMCs) from patients with lung cancer with different response rates to platinum-based chemotherapy. Methods: Several DDR-associated signals and redox status, expressed as the GSH/GSSG ratio, were measured in two lung cancer cell lines (A549, H1299), two normal fibroblast cell lines (WS1, 1BR3hT), and PBMCs from 20 healthy controls and 32 patients with lung cancer at baseline (17 responders and 15 non-responders to subsequent platinum-based chemotherapy). Results: Higher levels of endogenous/baseline DNA damage, decreased GSH/GSSG ratios, and augmented apurinic/apyrimidinic sites, as well as lower nucleotide excision repair (NER) and increased interstrand cross-links (ICLs) repair efficiencies, were observed in lung cancer cell lines compared with normal ones (all p < 0.05). Moreover, PBMCs from patients with lung cancer showed reduced GSH/GSSG ratios, augmented apurinic/apyrimidinic sites, decreased NER and ICL repair capacities, and lower apoptosis rates, compared with healthy controls (all p < 0.001). Interestingly, PBMCs from patients who are responders are characterized by reduced GSH/GSSG ratios, augmented apurinic/apyrimidinic sites, decreased NER and ICL repair capacities, and higher apoptosis rates compared with patients who are non-responders (all p < 0.01). Conclusions: Together, DDR-associated parameters and redox status measured in PBMCs from patients with lung cancer at baseline are associated with the therapeutic benefit of platinum-based chemotherapy. Full article
(This article belongs to the Special Issue Exploiting Liabilities in Mechanism of DNA Repair for Cancer Therapy)
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21 pages, 4095 KiB  
Article
Genome-Wide CRISPR Screen Identifies KEAP1 Perturbation as a Vulnerability of ARID1A-Deficient Cells
by Louis-Alexandre Fournier, Forouh Kalantari, James P. Wells, Joon Seon Lee, Genny Trigo-Gonzalez, Michelle M. Moksa, Theodore Smith, Justin White, Alynn Shanks, Siyun L. Wang, Edmund Su, Yemin Wang, David G. Huntsman, Martin Hirst and Peter C. Stirling
Cancers 2024, 16(17), 2949; https://doi.org/10.3390/cancers16172949 - 24 Aug 2024
Viewed by 1812
Abstract
ARID1A is the core DNA-binding subunit of the BAF chromatin remodeling complex and is mutated in about 8% of all cancers. The frequency of ARID1A loss varies between cancer subtypes, with clear cell ovarian carcinoma (CCOC) presenting the highest incidence at > 50% [...] Read more.
ARID1A is the core DNA-binding subunit of the BAF chromatin remodeling complex and is mutated in about 8% of all cancers. The frequency of ARID1A loss varies between cancer subtypes, with clear cell ovarian carcinoma (CCOC) presenting the highest incidence at > 50% of cases. Despite a growing understanding of the consequences of ARID1A loss in cancer, there remains limited targeted therapeutic options for ARID1A-deficient cancers. Using a genome-wide CRISPR screening approach, we identify KEAP1 as a genetic dependency of ARID1A in CCOC. Depletion or chemical perturbation of KEAP1 results in selective growth inhibition of ARID1A-KO cell lines and edited primary endometrial epithelial cells. While we confirm that KEAP1-NRF2 signalling is dysregulated in ARID1A-KO cells, we suggest that this synthetic lethality is not due to aberrant NRF2 signalling. Rather, we find that KEAP1 perturbation exacerbates genome instability phenotypes associated with ARID1A deficiency. Together, our findings identify a potentially novel synthetic lethal interaction of ARID1A-deficient cells. Full article
(This article belongs to the Special Issue Exploiting Liabilities in Mechanism of DNA Repair for Cancer Therapy)
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