You are currently viewing a new version of our website. To view the old version click .

Methods and Protocols, Volume 4, Issue 1

March 2021 - 23 articles

Cover Story: Bombyx mori is a model organism for lepidopteran genetics which is economically important for producing silk and is used in the textile, biomedical, and cosmetics sectors. Silkworms can also act as genetically engineered bioreactors to produce recombinant proteins. CRISPR/Cas9 technology is an efficient method of generating heritable gene-specific DNA modifications. After CRISPR/Cas9 mutagenesis, silkworms must be molecularly screened to identify individuals carrying a suitable DNA modification for selective breeding. We describe an efficient screening workflow involving a heteroduplex assay and Sanger sequencing for the characterization of mutations, and the amplification refractory mutation system PCR for the subsequent detection of the modification, enabling the establishment of B. mori mutant lines stably inheriting specific mutations. View this paper.
  • Issues are regarded as officially published after their release is announced to the table of contents alert mailing list .
  • You may sign up for email alerts to receive table of contents of newly released issues.
  • PDF is the official format for papers published in both, html and pdf forms. To view the papers in pdf format, click on the "PDF Full-text" link, and use the free Adobe Reader to open them.

Articles (23)

  • Communication
  • Open Access
4 Citations
3,997 Views
7 Pages

The clinical and preclinical research of ischemic strokes (IS) is becoming increasingly comprehensive, especially with the emerging evidence of complex thrombotic and inflammatory interactions. Within these, the blood brain barrier (BBB) plays an imp...

  • Review
  • Open Access
6 Citations
7,952 Views
19 Pages

Compendium of Methods to Uncover RNA-Protein Interactions In Vivo

  • Mrinmoyee Majumder and
  • Viswanathan Palanisamy

Control of gene expression is critical in shaping the pro-and eukaryotic organisms’ genotype and phenotype. The gene expression regulatory pathways solely rely on protein–protein and protein–nucleic acid interactions, which determine the fate of the...

  • Protocol
  • Open Access
5 Citations
6,398 Views
18 Pages

The reduction in costs associated with performing RNA-sequencing has driven an increase in the application of this analytical technique; however, restrictive factors associated with this tool have now shifted from budgetary constraints to time requir...

  • Protocol
  • Open Access
4 Citations
4,760 Views
23 Pages

RNA In Situ Hybridization for Detecting Gene Expression Patterns in the Abdomens and Wings of Drosophila Species

  • Mujeeb Shittu,
  • Tessa Steenwinkel,
  • William Dion,
  • Nathan Ostlund,
  • Komal Raja and
  • Thomas Werner

RNA in situ hybridization (ISH) is used to visualize spatio-temporal gene expression patterns with broad applications in biology and biomedicine. Here we provide a protocol for mRNA ISH in developing pupal wings and abdomens for model and non-model D...

  • Protocol
  • Open Access
3 Citations
8,518 Views
8 Pages

Effectiveness of Low-Level Laser Therapy Associated with Strength Training in Knee Osteoarthritis: Protocol for a Randomized Placebo-Controlled Trial

  • Martin Bjørn Stausholm,
  • Ingvill Fjell Naterstad,
  • Christian Couppé,
  • Kjartan Vibe Fersum,
  • Ernesto Cesar Pinto Leal-Junior,
  • Rodrigo Álvaro Brandão Lopes-Martins,
  • Jan Magnus Bjordal and
  • Jon Joensen

Physical activity and low-level laser therapy (LLLT) can reduce knee osteoarthritis (KOA) inflammation. We are conducting a randomized placebo-controlled trial to investigate the long-term effectiveness of LLLT combined with strength training (ST) in...

  • Protocol
  • Open Access
11 Citations
5,956 Views
7 Pages

27 February 2021

The Severe Acute Respiratory Syndrome-Coronavirus-2 (SARS-CoV-2) causes Coronavirus disease-2019 (COVID-19), which is an ongoing pandemic that has significantly affected the health, economy, and socio-economic status of individuals worldwide. Laborat...

  • Protocol
  • Open Access
64 Citations
10,214 Views
9 Pages

Concentration and Quantification of SARS-CoV-2 RNA in Wastewater Using Polyethylene Glycol-Based Concentration and qRT-PCR

  • Kata Farkas,
  • Luke S. Hillary,
  • Jamie Thorpe,
  • David I. Walker,
  • James A. Lowther,
  • James E. McDonald,
  • Shelagh K. Malham and
  • Davey L. Jones

23 February 2021

Wastewater-based epidemiology has become an important tool for the surveillance of SARS-CoV-2 outbreaks. However, the detection of viruses in sewage is challenging and to date there is no standard method available which has been validated for the sen...

  • Article
  • Open Access
12 Citations
4,237 Views
10 Pages

Total Face Approach (TFA): A Novel 3D Approach to Describe the Main Cephalometric Craniomaxillofacial Parameters

  • Giovanna Perrotti,
  • Giulia Baccaglione,
  • Tommaso Clauser,
  • Luca Testarelli,
  • Massimo Del Fabbro and
  • Tiziano Testori

20 February 2021

The aim of this study is to propose a 3D skeletal classification and relative normal values of reference. Method: from a pool of 271 cone-beam computerized tomography images 108 chin-summit examinations of the skull were selected and divided into 3 t...

  • Study Protocol
  • Open Access
19 Citations
6,232 Views
14 Pages

20 February 2021

Stable cell lines are widely used in laboratory research and pharmaceutical industry. They are mainly applied in recombinant protein and antibody productions, gene function studies, drug screens, toxicity assessments, and for cancer therapy investiga...

  • Protocol
  • Open Access
8 Citations
4,886 Views
12 Pages

The Enzyme-Modified Neutral Comet (EMNC) Assay for Complex DNA Damage Detection

  • Maria Rita Fabbrizi,
  • Jonathan R. Hughes and
  • Jason L. Parsons

16 February 2021

The comet assay is a versatile, simple, and sensitive gel electrophoresis–based method that can be used to measure and accurately quantify DNA damage, particularly single and double DNA strand breaks, in single cells. While generally this is used to...

of 3

Get Alerted

Add your email address to receive forthcoming issues of this journal.

XFacebookLinkedIn
Methods Protoc. - ISSN 2409-9279