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Non-Coding RNA, Volume 9, Issue 2

2023 April - 13 articles

Cover Story: MicroRNAs (miRNAs) are small non-coding RNAs regulating gene expression at the post-transcriptional level. MiRNAs have been found to have vital roles in various biological and pathological processes. In recent years, there has been an increase in the number of bioinformatic tools to assist in the massive demand in the field of miRNA research. Currently, such tools exist to aid researchers interested in various areas ranging from sequence annotation and validated miRNA targets to known associations with disease. Online web-based tools provide benefits to groups less experienced with programming and are regarded as more user friendly allowing accessibility to a wider range of audiences. In this brief review, such tools are categorised according to their primary purpose and will be introduced to highlight the diverse roles that miRNAs possess. View this paper
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Articles (13)

  • Communication
  • Open Access
5 Citations
5,853 Views
11 Pages

(1) Background: MicroRNAs are involved in the expression of the gene encoding the chloride channel CFTR (Cystic Fibrosis Transmembrane Conductance Regulator); the objective of this short report is to study the effects of the treatment of bronchial ep...

(This article belongs to the Special Issue Recent Advances in Chemical Biology to Study and Target ncRNAs)
  • Editorial
  • Open Access
3 Citations
4,824 Views
10 Pages

The Non-Coding RNA Journal Club: Highlights on Recent Papers—12

  • Patrick K. T. Shiu,
  • Mirolyuba Ilieva,
  • Anja Holm,
  • Shizuka Uchida and ,
  • Johanna K. DiStefano,
  • Agnieszka Bronisz,
  • Ling Yang,
  • Yoh Asahi,
  • Ajay Goel and
  • Lisa Timmons
  • + 22 authors+ 17 authors

We are delighted to share with you our twelfth Journal Club and highlight some of the most interesting papers published recently [...]

(This article belongs to the Collection The Non-Coding RNA Journal Club: Highlights on Recent Papers)
  • Feature Paper
  • Review
  • Open Access
80 Citations
8,150 Views
31 Pages

Targeting miRNAs and Other Non-Coding RNAs as a Therapeutic Approach: An Update

  • Emine Bayraktar,
  • Recep Bayraktar,
  • Hulya Oztatlici,
  • Gabriel Lopez-Berestein and ,
  • Paola Amero and
  • Cristian Rodriguez-Aguayo
  • + 1 author+ 0 author

Since the discovery of the first microRNAs (miRNAs, miRs), the understanding of miRNA biology has expanded substantially. miRNAs are involved and described as master regulators of the major hallmarks of cancer, including cell differentiation, prolife...

(This article belongs to the Special Issue ncRNAs to Target Molecular Pathways)
  • Review
  • Open Access
17 Citations
6,900 Views
22 Pages

Aging is associated with the accumulation of damaged and misfolded proteins through a decline in the protein homeostasis (proteostasis) machinery, leading to various age-associated protein misfolding diseases such as Huntington’s or Parkinson&r...

(This article belongs to the Section Detection and Biomarkers of Non-Coding RNA)
  • Article
  • Open Access
8 Citations
3,885 Views
15 Pages

LncRNA PNKY Is Upregulated in Breast Cancer and Promotes Cell Proliferation and EMT in Breast Cancer Cells

  • Forough Hakiminia,
  • Firooz Jannat Alipoor,
  • Mostafa Keshavarz and
  • Malek Hossein Asadi

Long non-coding RNAs (lncRNAs) are known to be important regulators in different cellular processes and are implicated in various human diseases. Recently, lncRNA PNKY has been found to be involved in pluripotency and differentiation of embryonic and...

(This article belongs to the Special Issue Selected Papers from IEEE BIBM 2021 Workshop on Long Non-coding RNAs: Mechanism, Function, and Computational Analysis (BIBM-LncRNA))
  • Article
  • Open Access
3,304 Views
15 Pages

Liquid Biopsies Poorly miRror Renal Ischemia-Reperfusion Injury

  • Adaysha C. Williams,
  • Vaishali Singh,
  • Pengyuan Liu and
  • Alison J. Kriegel

Acute kidney injury (AKI) is the rapid reduction in renal function. It is often difficult to detect at an early stage. Biofluid microRNAs (miRs) have been proposed as novel biomarkers due to their regulatory role in renal pathophysiology. The goal of...

(This article belongs to the Special Issue Non-coding RNA in the USA: Latest Advances and Perspectives)
  • Review
  • Open Access
46 Citations
6,509 Views
14 Pages

CircRNAs and RNA-Binding Proteins Involved in the Pathogenesis of Cancers or Central Nervous System Disorders

  • Yuka Ikeda,
  • Sae Morikawa,
  • Moeka Nakashima,
  • Sayuri Yoshikawa and ,
  • Kurumi Taniguchi,
  • Haruka Sawamura,
  • Naoko Suga,
  • Ai Tsuji and
  • Satoru Matsuda
  • + 4 authors+ 0 author

Circular RNAs (circRNAs), a newly recognized group of noncoding RNA transcripts, have established widespread attention due to their regulatory role in cell signaling. They are covalently closed noncoding RNAs that form a loop, and are typically gener...

(This article belongs to the Special Issue ncRNAs to Target Molecular Pathways)
  • Article
  • Open Access
12 Citations
3,751 Views
11 Pages

The Role of Genetic Variants in the Long Non-Coding RNA Genes MALAT1 and H19 in the Pathogenesis of Childhood Obesity

  • Tatiana Pavlovna Shkurat,
  • Manar Ammar,
  • Olga Bocharova,
  • Elena Teplyakova and ,
  • Anzhela Aleksandrova,
  • Ruba Ali and
  • Leonard Lipovich
  • + 2 authors+ 0 author

Long non-coding RNAs (lncRNAs) play important roles in the maintenance of metabolic homeostasis. Recently, many studies have suggested that lncRNAs, such as Metastasis Associated Lung Adenocarcinoma Transcript 1 (MALAT1) and Imprinted Maternally Expr...

(This article belongs to the Special Issue Selected Papers from IEEE BIBM 2021 Workshop on Long Non-coding RNAs: Mechanism, Function, and Computational Analysis (BIBM-LncRNA))
  • Article
  • Open Access
5 Citations
3,722 Views
13 Pages

Therapeutic Effects of WT1 Silencing via Respiratory Administration of Neutral DOPC Liposomal-siRNA in a Lung Metastasis Melanoma Murine Model

  • Martin R. Ramos-Gonzalez,
  • Eduardo Vazquez-Garza,
  • Gerardo Garcia-Rivas,
  • Cristian Rodriguez-Aguayo and
  • Arturo Chavez-Reyes

The lungs represent a frequent target for metastatic melanoma as they offer a high-oxygen environment for tumor development. The overexpression of the WT1 protein has been associated with the occurrence of melanoma. In this study, we evaluated the ef...

(This article belongs to the Special Issue ncRNAs to Target Molecular Pathways)
  • Article
  • Open Access
4 Citations
3,972 Views
19 Pages

Reassessing the Abundance of miRNAs in the Human Pancreas and Rodent Cell Lines and Its Implication

  • Guihua Sun,
  • Meirigeng Qi,
  • Alexis S. Kim,
  • Elizabeth M. Lizhar and ,
  • Olivia W. Sun,
  • Ismail H. Al-Abdullah and
  • Arthur D. Riggs
  • + 2 authors+ 0 author

miRNAs are critical for pancreas development and function. However, we found that there are discrepancies regarding pancreatic miRNA abundance in published datasets. To obtain a more relevant profile that is closer to the true profile, we profiled sm...

(This article belongs to the Collection Feature Papers in Non-Coding RNA)
  • Review
  • Open Access
31 Citations
5,952 Views
15 Pages

Long Noncoding RNA H19: A Novel Oncogene in Liver Cancer

  • Yanyan Wang,
  • Jing Zeng,
  • Weidong Chen,
  • Jiangao Fan and ,
  • Phillip B. Hylemon and
  • Huiping Zhou
  • + 1 author+ 0 author

Liver cancer is the second leading cause of cancer-related death globally, with limited treatment options. Recent studies have demonstrated the critical role of long noncoding RNAs (lncRNAs) in the pathogenesis of liver cancers. Of note, mounting evi...

(This article belongs to the Special Issue Women’s Special Issue Series: Noncoding RNAs and Diseases)
  • Review
  • Open Access
21 Citations
8,878 Views
15 Pages

Insights into Online microRNA Bioinformatics Tools

  • Diana Luna Buitrago,
  • Ruth C. Lovering and
  • Andrea Caporali

MicroRNAs (miRNAs) are members of the small non-coding RNA family regulating gene expression at the post-transcriptional level. MiRNAs have been found to have critical roles in various biological and pathological processes. Research in this field has...

(This article belongs to the Special Issue Methods and Tools in RNA Biology)
  • Feature Paper
  • Article
  • Open Access
12 Citations
6,903 Views
27 Pages

Immunoregulatory Biomarkers of the Remission Phase in Type 1 Diabetes: miR-30d-5p Modulates PD-1 Expression and Regulatory T Cell Expansion

  • Laia Gomez-Muñoz,
  • David Perna-Barrull,
  • Marta Murillo,
  • Maria Pilar Armengol and ,
  • Marta Alcalde,
  • Marti Catala,
  • Silvia Rodriguez-Fernandez,
  • Sergi Sunye,
  • Aina Valls and
  • Marta Vives-Pi
  • + 7 authors+ 2 authors

28 February 2023

The partial remission (PR) phase of type 1 diabetes (T1D) is an underexplored period characterized by endogenous insulin production and downmodulated autoimmunity. To comprehend the mechanisms behind this transitory phase and develop precision medici...

(This article belongs to the Topic MicroRNA: Mechanisms of Action, Physio-Pathological Implications, and Disease Biomarkers)
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Non-Coding RNA - ISSN 2311-553X