Transcriptome Dataset of Strawberry (Fragaria × ananassa Duch.) Leaves Using Oxford Nanopore Sequencing under LED Irradiation and Application of Methyl Jasmonate and Methyl Salicylate Hormones Treatment
Abstract
1. Summary
2. Data Description
3. Methods
3.1. Plant Treatment
3.2. Isolation RNA and Sequencing
3.3. Identification of Full-Length Transcripts
3.4. Estimation Gene Abundance
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Sample | BMJ | BMS | RMJ | RMS |
---|---|---|---|---|
RAW READS | ||||
Total Reads | 634,035 | 697,857 | 633,288 | 144,667 |
Average (bp) | 362.28 | 328.35 | 335.75 | 307.90 |
Largest (bp) | 44,572 | 48,586 | 34,703 | 202,197 |
N50 (bp) | 371, n = 195,583 | 321, n = 221,986 | 350, n = 206,574 | 297, n = 47,997 |
CLEANED READS | ||||
Total Reads | 523,511 | 564,539 | 475,749 | 104,408 |
Average (bp) | 197.08 | 163.06 | 179.62 | 148.94 |
Largest (bp) | 3638 | 5709 | 3585 | 3371 |
N50 (bp) | 285, n = 100,363 | 225, n = 106,168 | 236, n = 99,241 | 195, n = 21,516 |
Features | Numbers |
---|---|
Number and bases total (bp) of transcripts | 10,248/8,461,077 |
Length range, average (bp), and N50 (bp) of transcripts | 153–4190/825.63/955 |
| 4053 |
| |
a. 5′prime_partial; | 1130 (27.88%) |
b. 3′prime_partial; | 151 (3.73%) |
c. Internal; | 61 (1.51%) |
d. Complete. | 2711 (66.89%) |
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Adrian, M.; Poerwanto, R.; Inoue, E.; Matra, D.D. Transcriptome Dataset of Strawberry (Fragaria × ananassa Duch.) Leaves Using Oxford Nanopore Sequencing under LED Irradiation and Application of Methyl Jasmonate and Methyl Salicylate Hormones Treatment. Data 2023, 8, 22. https://doi.org/10.3390/data8020022
Adrian M, Poerwanto R, Inoue E, Matra DD. Transcriptome Dataset of Strawberry (Fragaria × ananassa Duch.) Leaves Using Oxford Nanopore Sequencing under LED Irradiation and Application of Methyl Jasmonate and Methyl Salicylate Hormones Treatment. Data. 2023; 8(2):22. https://doi.org/10.3390/data8020022
Chicago/Turabian StyleAdrian, M, Roedhy Poerwanto, Eiichi Inoue, and Deden Derajat Matra. 2023. "Transcriptome Dataset of Strawberry (Fragaria × ananassa Duch.) Leaves Using Oxford Nanopore Sequencing under LED Irradiation and Application of Methyl Jasmonate and Methyl Salicylate Hormones Treatment" Data 8, no. 2: 22. https://doi.org/10.3390/data8020022
APA StyleAdrian, M., Poerwanto, R., Inoue, E., & Matra, D. D. (2023). Transcriptome Dataset of Strawberry (Fragaria × ananassa Duch.) Leaves Using Oxford Nanopore Sequencing under LED Irradiation and Application of Methyl Jasmonate and Methyl Salicylate Hormones Treatment. Data, 8(2), 22. https://doi.org/10.3390/data8020022