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Genes, Volume 16, Issue 4

2025 April - 114 articles

Cover Story: Limited genetic diversity, popular sire effects, and common ancestry can lead to increased homozygosity in purebred dogs. Breeding goals to maintain breed-defining characteristics and remove deleterious traits may also increase homozygosity. Inbreeding, which increases homozygosity, is associated with reduced health traits. To counter increased homozygosity, it has been suggested that breeding decisions should include measures of genetic diversity. In the past, breeders utilized pedigrees in mate choice for desirable traits, whereas now, there are DNA-based measures of diversity. In this study, we compared coefficients of inbreeding for a Bearded Collie population using pedigree data and DNA-based data to assess the different measures of genetic diversity. We also asked if the variation present would be expected to have a functional impact. View this paper
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Articles (114)

  • Article
  • Open Access
2 Citations
1,453 Views
14 Pages

Genetic Editing of Tomato Golgi-Localized Nucleotide Sugar Transporter 1.1 Promotes Immunity Against Phytophthora infestans

  • Peize He,
  • Yanling Cai,
  • Yanzi Wang,
  • Zhiqing Wang and ,
  • Yaqing Lyu,
  • Tao Li,
  • Xingtan Zhang and
  • Shaoqun Zhou
  • + 3 authors+ 0 author

21 April 2025

Background: Functional alleles of host plant susceptibility genes (S genes) can exacerbate the severity of diseases by enhancing pathogen compatibility. Genetic editing of the targeted host S genes has demonstrated remarkable efficacy in conferring b...

(This article belongs to the Section Plant Genetics and Genomics)
  • Article
  • Open Access
5 Citations
2,720 Views
11 Pages

Clinical-Genetic Approach to Conditions with Macrocephaly and ASD/Behaviour Abnormalities: Variants in PTEN and PPP2R5D Are the Most Recurrent Gene Mutations in a Patient-Oriented Diagnostic Strategy

  • Federica Francesca L’Erario,
  • Annalisa Gazzellone,
  • Ilaria Contaldo,
  • Chiara Veredice and ,
  • Marina Carapelle,
  • Anna Gloria Renzi,
  • Clarissa Modafferi,
  • Marta Palucci,
  • Pino D’Ambrosio and
  • Giuseppe Marangi
  • + 16 authors+ 11 authors

20 April 2025

Background: Macrocephaly can be a component manifestation of several monogenic conditions, in association with intellectual disability/developmental delay (ID/DD) behaviour abnormalities, including autism spectrum disorders (ASD), and variable additi...

(This article belongs to the Section Human Genomics and Genetic Diseases)
  • Article
  • Open Access
1 Citations
1,526 Views
22 Pages

19 April 2025

Background/Objectives: Grapes (Vitis vinifera), particularly ‘Shine Muscat’, are prone to postharvest quality loss mainly due to poor storage tolerance. Actinomycetes are microbial resources that produce secondary metabolites that exhibit...

(This article belongs to the Special Issue 5Gs in Crop Genetic and Genomic Improvement: 2nd Edition)
  • Review
  • Open Access
3 Citations
3,569 Views
12 Pages

19 April 2025

Background: Splenic B-cell lymphomas and leukaemias include hairy cell leukaemia, splenic marginal zone lymphoma, splenic diffuse red pulp small B-cell lymphoma, and splenic B-cell lymphoma/leukaemia with prominent nucleoli. The main diagnostic chall...

(This article belongs to the Section Human Genomics and Genetic Diseases)
  • Article
  • Open Access
3 Citations
1,936 Views
22 Pages

miR-143-3p Promotes TSCM Differentiation and Inhibits Progressive T Cell Differentiation via Inhibiting ABL2 and PAG1

  • Wenkai Shi,
  • Jieming Hu,
  • Hongqiong Wang,
  • Huishan Zhong and ,
  • Wenfeng Zhang,
  • Jinquan Wang,
  • Hongwei Shao,
  • Han Shen,
  • Huaben Bo and
  • Fenglin Wu
  • + 6 authors+ 1 author

19 April 2025

Background: Adoptive cell therapy (ACT), including CAR-T and TCR-T therapies, shows promise for cancer treatment, depending on infused T cell expansion, persistence and activity. We previously characterized four T-cell subsets (TN, TSCM, TCM and TEM)...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Review
  • Open Access
5 Citations
7,536 Views
30 Pages

18 April 2025

Barth syndrome (BTHS) is inherited through an X-linked pattern. The gene is located on Xq28. Male individuals who inherit the TAFAZZIN pathogenic variant will have the associated condition, while female individuals who inherit the TAFAZZIN pathogenic...

  • Article
  • Open Access
2 Citations
3,082 Views
16 Pages

The Solute Carrier Superfamily as Therapeutic Targets in Pancreatic Ductal Adenocarcinoma

  • Sang Yeon Cho,
  • Hyuk Soo Eun,
  • Jaejeung Kim,
  • Yun Dam Ko and ,
  • Woo Sun Rou and
  • Jong Seok Joo
  • + 1 author+ 0 author

18 April 2025

Background: Pancreatic ductal adenocarcinoma (PDAC), a challenging and malignant cancer, primarily originates from the exocrine cells of the pancreas. The superfamily of solute carrier (SLC) transporters, consisting of more than 450 proteins divided...

(This article belongs to the Section Human Genomics and Genetic Diseases)
  • Article
  • Open Access
1 Citations
2,920 Views
13 Pages

Novel Truncating Variants in PODXL Represent a New Entity to Be Explored Among Podocytopathies

  • José María García-Aznar,
  • María Lara Besada-Cerecedo,
  • Cristina Castro-Alonso,
  • Milagros Sierra Carpio and ,
  • Miquel Blasco,
  • Borja Quiroga,
  • Michal Červienka,
  • Ricardo Mouzo,
  • Roser Torra and
  • Patricia de Sequera
  • + 6 authors+ 1 author

18 April 2025

Background/Objectives: Podocalyxin is a sialoprotein mainly expressed in the kidney cortex and lung tissue, which has been described as a component of the podocyte glycocalyx. This protein promotes the reorganization of the podocyte cytoskeleton, as...

(This article belongs to the Section Genetic Diagnosis)
  • Article
  • Open Access
3 Citations
1,972 Views
14 Pages

Comprehensive Analysis of Ghd7 Variations Using Pan-Genomics and Prime Editing in Rice

  • Jiarui Wang,
  • Shihang Liu,
  • Jisong Pu,
  • Jun Li and ,
  • Changcai He,
  • Lanjing Zhang,
  • Xu Zhou,
  • Dongyu Xu,
  • Luyao Zhou and
  • Changhui Sun
  • + 11 authors+ 6 authors

17 April 2025

The Ghd7 gene in rice plays a crucial role in determining heading date, plant height, and grain yield. However, the variations in Ghd7 and their functional implications across different rice accessions are not fully understood. Based on the release o...

(This article belongs to the Collection Feature Papers: 'Plant Genetics and Genomics' Section)
  • Article
  • Open Access
6,964 Views
10 Pages

Genetic Profiling and Performance Optimization in Elite Combat Sport Athletes: A Cross-Sectional Study Based on Total Genetic Score Analysis

  • Andrea Pagliaro,
  • Anna Alioto,
  • Alessia Boatta,
  • Giuseppe Messina and ,
  • Patrik Drid,
  • Paolo Milazzo,
  • Cristina Cortis,
  • Andrea Fusco,
  • Sonya Vasto and
  • Sara Baldassano
  • + 6 authors+ 1 author

17 April 2025

Background/Objectives: The interplay between genetics and athletic performance has garnered significant attention, particularly regarding performance-enhancing polymorphisms (PEPs) and their role in determining key traits that are critical for athlet...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
4 Citations
1,728 Views
21 Pages

Genome-Wide Identification and Expression Pattern Analysis of SBP Gene Family in Neolamarckia cadamba

  • Linhan Tang,
  • Keying Li,
  • Chuqing Cai,
  • Wenjun Wu and ,
  • Guichen Jian,
  • Ziming Lei,
  • Changcao Peng and
  • Jianmei Long
  • + 3 authors+ 0 author

17 April 2025

Background: SQUAMOSA promoter-binding protein (SBP) genes encode a group of plant-specific transcription factors that play crucial roles in plant growth, development, and stress responses. To date, SBP genes have been reported in a number of plant sp...

(This article belongs to the Section Plant Genetics and Genomics)
  • Case Report
  • Open Access
3 Citations
1,957 Views
10 Pages

Loose Anagen Hair Associated with Wooly Hair Caused by a Heterozygous, Intronic KRT71 Variant

  • Elizabeth Phillippi,
  • Marcelo Melo,
  • Kelly N. Messingham and
  • Hatem El-Shanti

17 April 2025

Background: Loose anagen hair syndrome is a recently described genetic form of non-scarring alopecia that occurs in children and is due to poorly anchored hair shafts during the anagen phase. It can occur alone or in association with hair pathology o...

(This article belongs to the Section Human Genomics and Genetic Diseases)
  • Article
  • Open Access
4 Citations
4,747 Views
18 Pages

Genetic Features of Tumours Arising in the Context of Suspected Hereditary Cancer Syndromes with RAD50, RAD51C/D, and BRIP1 Germline Mutations, Results of NGS-Reanalysis of BRCA/MMR-Negative Families

  • Mónica Arranz-Ledo,
  • Mar Infante,
  • Enrique Lastra,
  • Amaya Olaverri and ,
  • Marta Orozco,
  • Lucia C. Mateo,
  • Noemí Martínez,
  • Lara Hernández and
  • Mercedes Durán
  • + 4 authors+ 0 author

16 April 2025

Background and Objectives: Despite the well-established role of the BRCA and mismatch repair (MMR) genes in DNA damage repair pathways, a substantial proportion of familial cancer cases still lack pathogenic variants in those genes. Next Generation S...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
1 Citations
1,612 Views
13 Pages

Decoding the Mitochondrial Genome of the Tiger Shrimp: Comparative Genomics and Phylogenetic Placement Within Caridean Shrimps

  • Zhengfei Wang,
  • Weijie Jiang,
  • Jingxue Ye,
  • Huiwen Wu and ,
  • Yan Wang and
  • Fei Xiong
  • + 1 author+ 0 author

16 April 2025

Background/Objectives: Freshwater shrimps of the family Atyidae, particularly the hyperdiverse genus Caridina, are keystone decomposers in tropical aquatic ecosystems and valuable aquaculture resources. However, their evolutionary relationships remai...

(This article belongs to the Special Issue Molecular Evolution, Mitochondrial Genomics and Mitochondrial Genome Expression in Animals: 2024–2025)
  • Article
  • Open Access
4 Citations
1,717 Views
20 Pages

IL-6 Affects Liver Metabolic Abnormalities Caused by Silicon Exposure by Regulating the PKC/YY1 Signaling Pathway

  • Hui Zhao,
  • Huihui Tao,
  • Jian Gao,
  • Jingjing Wang and ,
  • Guangliang Hui,
  • Ye Zhu,
  • Jialin Wang,
  • Xuansheng Ding and
  • Yong Dai
  • + 4 authors+ 0 author

16 April 2025

Background: This study aims to investigate the impact of coal dust (silicon dioxide) exposure on dyslipidemia and its underlying mechanisms, with a focus on the association between coal dust exposure and hepatic metabolic disorders. Methods: Clinical...

(This article belongs to the Section Human Genomics and Genetic Diseases)
  • Article
  • Open Access
1 Citations
1,753 Views
15 Pages

Inferring the Degree of Relatedness and Kinship Types Using an All-in-One Marker Set

  • Ran Li,
  • Yu Zang,
  • Jiajun Liu,
  • Enlin Wu and ,
  • Riga Wu and
  • Hongyu Sun
  • + 1 author+ 0 author

15 April 2025

Background/Objectives: Kinship inference is commonly adopted in various forensic applications, but previous studies have often lacked precision. Methods: In this study, a new method for the nomenclature of kinship types, i.e., kinship chain (KC), was...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
5 Citations
5,369 Views
18 Pages

Population-Specific Differences in Pathogenic Variants of Genes Associated with Monogenic Parkinson’s Disease

  • Victor Flores-Ocampo,
  • Amanda Wei-Yin Lim,
  • Natalia S. Ogonowski,
  • Luis M. García-Marín and ,
  • Jue-Sheng Ong,
  • Dennis Yeow,
  • Claudia Gonzaga-Jauregui,
  • Kishore R. Kumar and
  • Miguel E. Rentería
  • + 4 authors+ 0 author

15 April 2025

Background: Parkinson’s disease (PD) is a genetically complex neurodegenerative disorder. Up to 15% of cases are considered monogenic. However, research on monogenic PD has largely focused on populations of European ancestry, leaving gaps in ou...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
4 Citations
2,254 Views
16 Pages

Association of ABC Efflux Transporter Genetic Variants and Adverse Drug Reactions and Survival in Patients with Non-Small Lung Cancer

  • Cecilia Souto Seguin,
  • Giovana Fernanda Santos Fidelis,
  • Carolina Dagli-Hernandez,
  • Pedro Eduardo Nascimento Silva Vasconcelos and ,
  • Mariana Vieira Morau,
  • Yasmim Gabriele Matos,
  • Maurício Wesley Perroud,
  • Eder de Carvalho Pincinato and
  • Patricia Moriel
  • + 4 authors+ 0 author

15 April 2025

Background/Objectives: Lung cancer has a high mortality rate worldwide, with non-small cell lung cancer (NSCLC) being the most prevalent. Carboplatin and paclitaxel are key treatments for NSCLC; however, adverse drug reactions (ADRs) pose significant...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
5 Citations
3,500 Views
19 Pages

Deciphering Gut Microbiome in Colorectal Cancer via Robust Learning Methods

  • Huiye Han,
  • Ying Li,
  • Youran Qi,
  • Stefano Mangiola and
  • Wodan Ling

15 April 2025

Background: Colorectal cancer (CRC) is one of the most prevalent cancers worldwide and is closely linked to the gut microbiota. Identifying reproducible and generalizable microbial signatures holds significant potential for enhancing early detection...

(This article belongs to the Special Issue Advances in Bioinformatics and Environmental Health)
  • Article
  • Open Access
6 Citations
1,869 Views
17 Pages

Identification and Expression Analysis of Chalcone Synthase Gene Family in Tartary Buckwheat

  • Qinghai Wang,
  • Yanhua Jia,
  • Xin Lin,
  • Lu Tan and ,
  • Hanmei Du and
  • Anhu Wang
  • + 1 author+ 0 author

14 April 2025

Background: Chalcone synthase (CHS) functions as a pivotal and initiating enzyme in the flavonoid biosynthesis pathway within plants, playing a crucial role in the accumulation and metabolic processes of flavonoids. Despite its importance, there has...

(This article belongs to the Section Plant Genetics and Genomics)
  • Article
  • Open Access
2 Citations
1,774 Views
15 Pages

Assembly and Comparative Analysis of the Complete Mitochondrial Genomes of Smilax glabra and Smilax zeylanica

  • Guojian Liao,
  • Wenjing Liang,
  • Haixia Yu,
  • Kun Zhang and ,
  • Linxuan Li,
  • Shixin Feng,
  • Lisha Song,
  • Cuihong Yang,
  • Lingyun Wan and
  • Shugen Wei
  • + 7 authors+ 2 authors

14 April 2025

Background: Smilax glabra (S. glabra) and Smilax zeylanica (S. zeylanica), two medicinally important species within the genus Smilax, have been widely used in Traditional Chinese Medicine (TCM) for the treatment of rheumatism, traumatic inj...

(This article belongs to the Section Plant Genetics and Genomics)
  • Article
  • Open Access
5 Citations
4,265 Views
13 Pages

13 April 2025

Background: Quercetin, a dietary flavonoid and a widely used supplement, has hepatoprotective properties. Given its urate-lowering effects and epidemiological evidence linking elevated serum urate levels to liver cancer risk, we tested whether querce...

(This article belongs to the Section Bioinformatics)
  • Article
  • Open Access
2 Citations
2,476 Views
16 Pages

G0S2 Promotes PD-L1 Expression in Monocytes and Influences the Efficacy of PD-1 Inhibitors in Hepatocellular Carcinoma

  • Xuanshuang Du,
  • Wenwen Zhang,
  • Sujuan Sun,
  • Chenghao Liu and ,
  • Yuanying He,
  • Fengling Luo,
  • Hongyan Wu and
  • Min Liu
  • + 3 authors+ 0 author

13 April 2025

Background: Hepatocellular carcinoma (HCC) is a prevalent and highly lethal form of liver cancer, with limited effective treatment options, particularly in the advanced stages. Immunotherapy using PD-1 inhibitors has emerged as a promising treatment...

(This article belongs to the Section Human Genomics and Genetic Diseases)
  • Article
  • Open Access
1 Citations
1,647 Views
19 Pages

12 April 2025

Background: The Satyrinae subfamily represents a taxonomically critical group within Nymphalidae, characterized by its remarkable species diversity. Despite its evolutionary significance, the phylogenetic relationships among tribal and subtribal line...

(This article belongs to the Special Issue Mitochondrial DNA Replication and Transcription)
  • Review
  • Open Access
10 Citations
6,991 Views
30 Pages

Role of MicroRNAs in Acute Myeloid Leukemia

  • Aneta Wiśnik,
  • Dariusz Jarych,
  • Kinga Krawiec,
  • Piotr Strzałka and ,
  • Natalia Potocka,
  • Magdalena Czemerska,
  • Aleksandra Sałagacka-Kubiak,
  • Agnieszka Pluta,
  • Agnieszka Wierzbowska and
  • Izabela Zawlik
  • + 5 authors+ 0 author

11 April 2025

MicroRNA (miRNA), a significant class of regulatory non-coding RNA (ncRNA), can regulate the expression of numerous protein-coding messenger RNAs (mRNAs). miRNA plays an important part in shaping the human transcriptome. So far, in the human genome,...

(This article belongs to the Special Issue RNA Interference Pathways)
  • Article
  • Open Access
3 Citations
1,571 Views
18 Pages

Whole-Genome Insights into the Genetic Basis of Conformation Traits in German Black Pied (DSN) Cattle

  • Amelie Mandel,
  • Monika Reißmann,
  • Gudrun A. Brockmann and
  • Paula Korkuć

10 April 2025

Background: The German Black Pied Dairy (DSN) cattle is an endangered dual-purpose breed considered an ancestor of the modern Holstein population. DSN is known for its high milk yield, favorable milk composition, and good meat quality. Maintaining a...

(This article belongs to the Section Animal Genetics and Genomics)
  • Article
  • Open Access
2,056 Views
11 Pages

Development of a BiAD Sensor for Locus-Specific Detection of Cellular Histone Acetylation Dynamics by Fluorescence Microscopy

  • Anja R. Köhler,
  • Nicole Gutekunst,
  • Annika Harsch,
  • Pavel Bashtrykov and
  • Albert Jeltsch

10 April 2025

Background: Dynamic changes in histone acetylation play crucial roles during cellular differentiation and disease development, but their detection in living cells is still a challenging task. Objectives: Here, we developed a Bimolecular Anchor Detect...

(This article belongs to the Special Issue 15th Anniversary of Genes: Feature Papers in the “Molecular Genetics and Genomics” Section)
  • Review
  • Open Access
3 Citations
5,220 Views
14 Pages

Current Trends in Liquid Biopsy Tracking Resistance in Molecular Breast Cancer-Targeted Therapies

  • Richard Tancredi,
  • Navid Sobhani,
  • Martina Catalano,
  • Giandomenico Roviello and
  • Daniele Generali

9 April 2025

Breast cancer (BC) is the most commonly occurring type of cancer in women, being a major cancer-related cause of mortality worldwide. With the advancement in current therapeutic options, including hormone therapy and targeted therapies, there is a ne...

(This article belongs to the Section Human Genomics and Genetic Diseases)
  • Review
  • Open Access
4 Citations
3,182 Views
33 Pages

The microRNA Pathway of Macroalgae: Its Similarities and Differences to the Plant and Animal microRNA Pathways

  • Jessica Webb,
  • Min Zhao,
  • Alexandra H. Campbell,
  • Nicholas A. Paul and ,
  • Scott F. Cummins and
  • Andrew L. Eamens
  • + 1 author+ 0 author

9 April 2025

In plants and animals, the microRNA (miRNA) class of small regulatory RNA plays an essential role in controlling gene expression in all aspects of development, to respond to environmental stress, or to defend against pathogen attack. This well-establ...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Review
  • Open Access
31 Citations
33,152 Views
27 Pages

MTHFR Gene Polymorphisms: A Single Gene with Wide-Ranging Clinical Implications—A Review

  • Antoni F. Araszkiewicz,
  • Krzysztof Jańczak,
  • Paweł Wójcik,
  • Bartłomiej Białecki and ,
  • Szymon Kubiak,
  • Michał Szczechowski and
  • Danuta Januszkiewicz-Lewandowska
  • + 2 authors+ 0 author

8 April 2025

The enzyme 5,10-methylenetetrahydrofolate reductase (MTHFR) catalyzes the conversion of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate, a process essential for the methylation of homocysteine to methionine. Polymorphisms in the MTHFR gene...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
3 Citations
1,866 Views
15 Pages

8 April 2025

Background: Small heat shock proteins (sHsps), particularly Hsp20 family members, are pivotal for plant thermotolerance and abiotic stress adaptation. However, their evolutionary dynamics and functional roles in Lycium barbarum (goji berry), a commer...

(This article belongs to the Section Plant Genetics and Genomics)
  • Article
  • Open Access
4 Citations
5,352 Views
17 Pages

A Genome-Wide Association Study of First-Episode Psychosis: A Genetic Exploration in an Italian Cohort

  • Mirko Treccani,
  • Lucia Maggioni,
  • Claudia Di Giovanni,
  • Laura Veschetti and ,
  • Doriana Cristofalo,
  • Cristina Patuzzo,
  • Antonio Lasalvia,
  • Branko Ristic,
  • Roushan Kumar and
  • Sarah Tosato
  • + 9 authors+ 4 authors

7 April 2025

Background: Psychosis, particularly schizophrenia (SZ), is influenced by genetic and environmental factors. The neurodevelopmental hypothesis suggests that genetic factors affect neuronal circuit connectivity during perinatal periods, hence causing t...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
2 Citations
1,671 Views
15 Pages

6 April 2025

Background: The Arabidopsis FCS-LIKE ZINC FINGER (FLZ) family proteins play crucial roles in responses to various biotic and abiotic stresses, but the functions of many family members remain uncharacterized. Methods: In this study, we investigated th...

(This article belongs to the Section Plant Genetics and Genomics)
  • Review
  • Open Access
4 Citations
2,633 Views
21 Pages

RON Receptor Signaling and the Tumor Microenvironment

  • Emily Wachter,
  • Levi H. Fox,
  • Zhixin Lu,
  • Angelle D. Jones and ,
  • Nicholas D. Casto and
  • Susan E. Waltz
  • + 1 author+ 0 author

6 April 2025

The immune microenvironment plays a critical role in tumor growth and development. Immune activation within the tumor microenvironment is dynamic and can be modulated by tumor intrinsic and extrinsic signaling. The RON receptor tyrosine kinase is can...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
3 Citations
1,846 Views
15 Pages

A Knockout of the OsGAPDHC6 Gene Encoding a Cytosolic Glyceraldehyde-3-Phosphate Dehydrogenase Reacts Sensitively to Abiotic Stress in Rice

  • Jin-Young Kim,
  • Ye-Ji Lee,
  • Hye-Mi Lee,
  • Yoo-Seob Jung and ,
  • Jiyun Go,
  • Hyo-Ju Lee,
  • Ki-Sun Nam,
  • Jong-Hee Kim,
  • Kwon-Kyoo Kang and
  • Yu-Jin Jung
  • + 5 authors+ 0 author

6 April 2025

Background/Objectives: The glyceraldehyde-3-phosphate dehydrogenase (GAPDH) enzyme, encoded by OsGAPDHC6, plays a crucial role in glycolysis while participating in various physiological and stress response pathways. Methods: In this study, the expres...

(This article belongs to the Section Plant Genetics and Genomics)
  • Article
  • Open Access
2 Citations
1,334 Views
13 Pages

5 April 2025

Background/Objectives: Pyrrhalta aenescens, a major pest of elm trees, causes extensive ecological and economic damage through rapid population growth and defoliation. Existing research mainly focuses on its biological traits and chemical control, wi...

(This article belongs to the Special Issue Genomics, Transcriptomics, and Proteomics of Insects)
  • Case Report
  • Open Access
1 Citations
4,246 Views
10 Pages

Maternal Uniparental Isodisomy of Chromosome 6: A Novel Case of Teratoma and Autism Spectrum Disorder with a Diagnostic and Management Framework

  • Aleksandra Świeca,
  • Maria Franaszczyk,
  • Agnieszka Maryniak,
  • Patryk Lipiński and ,
  • Rafał Płoski and
  • Krzysztof Szczałuba
  • + 1 author+ 0 author

5 April 2025

Background: Uniparental disomy (UPD) is the inheritance of both copies of a chromosome from a single parent, leading to distinct genetic conditions. Maternal UPD of chromosome 6 (UPD(6)mat) is extremely rare, with few molecularly confirmed cases repo...

(This article belongs to the Section Human Genomics and Genetic Diseases)
  • Article
  • Open Access
2 Citations
2,067 Views
13 Pages

5 April 2025

Background/Objectives: Broiler chickens are excellent animals for protein production and play an essential role in the food industry. The purpose of this study is to investigate the effect of coated sodium butyrate (CSB) on the biochemical indices, a...

(This article belongs to the Section Animal Genetics and Genomics)
  • Article
  • Open Access
6 Citations
2,812 Views
19 Pages

5 April 2025

Background/Objectives: Codon usage bias affects gene expression and translation efficiency across species. The effective number of codons (ENC) and GC content influence codon preference, often displaying unimodal or bimodal distributions. This study...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
3 Citations
2,706 Views
10 Pages

4 April 2025

Background/Objectives: Human-driven selection has shaped modern horse breeds into highly specialized athletes, particularly in racing. Arabian horses, renowned for their endurance, provide an excellent model for studying molecular adaptations to exer...

(This article belongs to the Section Animal Genetics and Genomics)
  • Article
  • Open Access
1 Citations
1,566 Views
14 Pages

Abundant β-Defensin Copy Number Variations in Pigs

  • Dohun Kim,
  • Hye-sun Cho,
  • Mingue Kang,
  • Byeongyong Ahn and ,
  • Jaeyeol Shin and
  • Chankyu Park
  • + 1 author+ 0 author

4 April 2025

Background/Objectives: β-defensins are a family of classical endogenous antimicrobial peptides involved in innate immune response. β-defensins are encoded by a large number of loci and known to show extensive copy number variations (CNVs) t...

(This article belongs to the Section Animal Genetics and Genomics)
  • Article
  • Open Access
10 Citations
2,485 Views
17 Pages

Identification and Expression Analysis of CCCH Zinc Finger Family Genes in Oryza sativa

  • Zhihan Wang,
  • Shunyuan Li,
  • Hongkai Wu,
  • Linzhou Huang and ,
  • Liangbo Fu,
  • Chengfang Zhan,
  • Xueli Lu,
  • Long Yang,
  • Liping Dai and
  • Dali Zeng
  • + 5 authors+ 0 author

3 April 2025

Background: CCCH zinc finger proteins (OsC3Hs) are a class of transcriptional regulators that play important roles in plant development and stress responses. Although their functional significance has been widely studied in model species, comprehensi...

(This article belongs to the Special Issue Genetics and Breeding of Rice)
  • Feature Paper
  • Review
  • Open Access
7 Citations
8,880 Views
21 Pages

Genetics of Suicide

  • Mostafa Khalil,
  • Anil Kalyoncu and
  • Alfredo Bellon

3 April 2025

Over the past two decades, suicide has consistently ranked among the leading causes of death in the United States. While suicide deaths are closely associated with uicidal ideation and attempts, these are not good predictors of future suicide deaths....

  • Article
  • Open Access
6 Citations
6,479 Views
21 Pages

Advancing Non-Invasive Prenatal Screening: A Targeted 1069-Gene Panel for Comprehensive Detection of Monogenic Disorders and Copy Number Variations

  • Roberto Sirica,
  • Alessandro Ottaiano,
  • Luigi D’Amore,
  • Monica Ianniello and ,
  • Nadia Petrillo,
  • Raffaella Ruggiero,
  • Rosa Castiello,
  • Alessio Mori,
  • Eloisa Evangelista and
  • Antonio Fico
  • + 9 authors+ 4 authors

2 April 2025

We introduce an innovative, non-invasive prenatal screening approach for detecting fetal monogenic alterations and copy number variations (CNVs) from maternal blood. Method: Circulating free DNA (cfDNA) was extracted from maternal peripheral blood an...

(This article belongs to the Section Technologies and Resources for Genetics)
  • Article
  • Open Access
6 Citations
2,124 Views
27 Pages

GONNMDA: A Ordered Message Passing GNN Approach for miRNA–Disease Association Prediction

  • Sihao Zeng,
  • Shanwen Zhang,
  • Zhen Wang,
  • Chen Yang and
  • Shenao Yuan

1 April 2025

Small non-coding molecules known as microRNAs (miRNAs) play a critical role in disease diagnosis, treatment, and prognosis evaluation. Traditional wet-lab methods for validating miRNA–disease associations are often time-consuming and inefficien...

(This article belongs to the Section Bioinformatics)
  • Review
  • Open Access
2 Citations
2,125 Views
15 Pages

1 April 2025

Plants have repeatedly undergone whole-genome duplication during their evolutionary history. Even in modern plants, there is diversity in ploidy within and between species, providing a snapshot of the evolutionary turnover of ploidy. Here, I will rev...

(This article belongs to the Section Plant Genetics and Genomics)
  • Article
  • Open Access
1,511 Views
26 Pages

LMFE: A Novel Method for Predicting Plant LncRNA Based on Multi-Feature Fusion and Ensemble Learning

  • Hongwei Zhang,
  • Yan Shi,
  • Yapeng Wang,
  • Xu Yang and ,
  • Kefeng Li,
  • Sio-Kei Im and
  • Yu Han
  • + 2 authors+ 0 author

31 March 2025

Background/Objectives: Long non-coding RNAs (lncRNAs) play a crucial regulatory role in plant trait expression and disease management, making their accurate prediction a key research focus for guiding biological experiments. While extensive studies h...

(This article belongs to the Section Bioinformatics)
  • Article
  • Open Access
3 Citations
3,456 Views
24 Pages

31 March 2025

Background/Objectives: The dysregulation of miRNA expression in samples from autistic individuals indicates that they are involved in autism. The participation of miRNAs in paternal epigenetic inheritance has also been reported. This study used bioin...

(This article belongs to the Section Bioinformatics)
  • Article
  • Open Access
3 Citations
1,639 Views
13 Pages

Genome-Wide Association Study Identifies Potential Regulatory Loci and Pathways Related to Buffalo Reproductive Traits

  • Wangchang Li,
  • Qiyang Xie,
  • Haiying Zheng,
  • Anqin Duan and ,
  • Liqing Huang,
  • Chao Feng,
  • Jianghua Shang and
  • Chunyan Yang
  • + 3 authors+ 0 author

31 March 2025

Background: The reproductive performance of water buffalo significantly impacts the economic aspects of production. Traditional breeding methods are constrained by low heritability and numerous influencing factors, making it difficult to effectively...

(This article belongs to the Special Issue Buffalo Genetics and Genomics)
  • Review
  • Open Access
7 Citations
4,170 Views
10 Pages

31 March 2025

Reproductive genetic carrier screening (RGCS) has emerged as a promising tool for identifying couples with an increased likelihood of conceiving a child with an autosomal recessive or X-linked genetic condition. By enabling early detection, RGCS has...

(This article belongs to the Special Issue Human Genetics: Diseases, Community, and Counseling)

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Genes - ISSN 2073-4425