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Viruses, Volume 9, Issue 4

2017 April - 31 articles

Cover Story: The Ty1 restriction factor p22 is encoded by internally initiated Ty1i RNA. It contains two functional initiation codons embedded within a distinct structural domain. Mutational analyses suggest that the p22 level decreases when this RNA domain is destabilized at the secondary or tertiary structural levels. Also, our data support the idea that Gag itself and possibly other cellular proteins interact with the AUG-containing structural motif of Ty1i RNA to modulate its stability and translation. View this paper
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Articles (31)

  • Article
  • Open Access
23 Citations
6,841 Views
17 Pages

Replication and Oncolytic Activity of an Avian Orthoreovirus in Human Hepatocellular Carcinoma Cells

  • Robert A. Kozak,
  • Larissa Hattin,
  • Mia J. Biondi,
  • Juan C. Corredor,
  • Scott Walsh,
  • Max Xue-Zhong,
  • Justin Manuel,
  • Ian D. McGilvray,
  • Jason Morgenstern and
  • Éva Nagy
  • + 6 authors

24 April 2017

Oncolytic viruses are cancer therapeutics with promising outcomes in pre-clinical and clinical settings. Animal viruses have the possibility to avoid pre-existing immunity in humans, while being safe and immunostimulatory. We isolated an avian orthor...

  • Article
  • Open Access
59 Citations
8,833 Views
19 Pages

Deep Sequencing Analysis of RNAs from Citrus Plants Grown in a Citrus Sudden Death-Affected Area Reveals Diverse Known and Putative Novel Viruses

  • Emilyn E. Matsumura,
  • Helvecio D. Coletta-Filho,
  • Shahideh Nouri,
  • Bryce W. Falk,
  • Luca Nerva,
  • Tiago S. Oliveira,
  • Silvia O. Dorta and
  • Marcos A. Machado

24 April 2017

Citrus sudden death (CSD) has caused the death of approximately four million orange trees in a very important citrus region in Brazil. Although its etiology is still not completely clear, symptoms and distribution of affected plants indicate a viral...

  • Feature Paper
  • Review
  • Open Access
38 Citations
8,415 Views
23 Pages

Chloroviruses Have a Sweet Tooth

  • James L. Van Etten,
  • Irina Agarkova,
  • David D. Dunigan,
  • Michela Tonetti,
  • Christina De Castro and
  • Garry A. Duncan

22 April 2017

Chloroviruses are large double-stranded DNA (dsDNA) viruses that infect certain isolates of chlorella-like green algae. They contain up to approximately 400 protein-encoding genes and 16 transfer RNA (tRNA) genes. This review summarizes the unexpecte...

  • Conference Report
  • Open Access
4 Citations
6,581 Views
10 Pages

“French Phage Network”—Second Meeting Report

  • Clara Torres-Barceló,
  • Oliver Kaltz,
  • Rémy Froissart,
  • Sylvain Gandon,
  • Nicolas Ginet and
  • Mireille Ansaldi

21 April 2017

The study of bacteriophages (viruses of bacteria) includes a variety of approaches, such as structural biology, genetics, ecology, and evolution, with increasingly important implications for therapeutic and industrial uses. Researchers working with p...

  • Review
  • Open Access
228 Citations
30,968 Views
25 Pages

Classical Swine Fever—An Updated Review

  • Sandra Blome,
  • Christoph Staubach,
  • Julia Henke,
  • Jolene Carlson and
  • Martin Beer

21 April 2017

Classical swine fever (CSF) remains one of the most important transboundary viral diseases of swine worldwide. The causative agent is CSF virus, a small, enveloped RNA virus of the genus Pestivirus. Based on partial sequences, three genotypes can be...

  • Review
  • Open Access
50 Citations
9,572 Views
13 Pages

Porcine Circoviruses and Xenotransplantation

  • Joachim Denner and
  • Annette Mankertz

20 April 2017

Allotransplantation and xenotransplantation may be associated with the transmission of pathogens from the donor to the recipient. Whereas in the case of allotransplantation the transmitted microorganisms and their pathogenic effect are well character...

  • Article
  • Open Access
28 Citations
7,522 Views
18 Pages

Seasonal Dynamics of Haptophytes and dsDNA Algal Viruses Suggest Complex Virus-Host Relationship

  • Torill Vik Johannessen,
  • Aud Larsen,
  • Gunnar Bratbak,
  • António Pagarete,
  • Bente Edvardsen,
  • Elianne D. Egge and
  • Ruth-Anne Sandaa

20 April 2017

Viruses influence the ecology and diversity of phytoplankton in the ocean. Most studies of phytoplankton host–virus interactions have focused on bloom-forming species like Emiliania huxleyi or Phaeocystis spp. The role of viruses infecting phytoplank...

  • Review
  • Open Access
34 Citations
9,301 Views
13 Pages

20 April 2017

Human papillomavirus (HPV)-induced neoplasms have long been considered to originate from viral infection of the basal cell layer of the squamous mucosa. However, this paradigm has been recently undermined by accumulating data supporting the critical...

  • Review
  • Open Access
18 Citations
8,964 Views
11 Pages

16 April 2017

Long terminal repeat (LTR) retrotransposons occupy a special place among all mobile genetic element families. The structure of LTR retrotransposons that have three open reading frames is identical to DNA forms of retroviruses that are integrated into...

  • Article
  • Open Access
19 Citations
7,750 Views
10 Pages

16 April 2017

Although there have been many epidemiological reports of the inter-country transmission of measles, systematic analysis of the global transmission dynamics of the measles virus (MV) is limited. In this study, we applied phylogeographic analysis to ch...

  • Review
  • Open Access
54 Citations
11,465 Views
27 Pages

Protein-Coding Genes’ Retrocopies and Their Functions

  • Magdalena Regina Kubiak and
  • Izabela Makałowska

13 April 2017

Transposable elements, often considered to be not important for survival, significantly contribute to the evolution of transcriptomes, promoters, and proteomes. Reverse transcriptase, encoded by some transposable elements, can be used in trans to pro...

  • Article
  • Open Access
29 Citations
6,823 Views
12 Pages

12 April 2017

Shuang–Huang–Lian injectable powder (SHL)—a classical purified herbal preparation extracted from Scutellaria baicalensis, Lonicera japonica, and Forsythia suspense—has been used against human adenovirus III (HAdV3) for many years. The combination her...

  • Article
  • Open Access
11 Citations
6,298 Views
12 Pages

11 April 2017

Rotifers of the class Bdelloidea, microscopic freshwater invertebrates, possess a highlydiversified repertoire of transposon families, which, however, occupy less than 4% of genomic DNA in the sequenced representative Adineta vaga. We performed a com...

  • Review
  • Open Access
35 Citations
7,980 Views
14 Pages

11 April 2017

The 17D line of yellow fever virus vaccines is among the most effective vaccines ever created. The humoral and cellular immunity elicited by 17D has been well characterized in humans. Neutralizing antibodies have long been known to provide protection...

  • Review
  • Open Access
361 Citations
27,444 Views
18 Pages

HBV DNA Integration: Molecular Mechanisms and Clinical Implications

  • Thomas Tu,
  • Magdalena A. Budzinska,
  • Nicholas A. Shackel and
  • Stephan Urban

10 April 2017

Chronic infection with the Hepatitis B Virus (HBV) is a major cause of liver-related morbidity and mortality. One peculiar observation in cells infected with HBV (or with closely‑related animal hepadnaviruses) is the presence of viral DNA integration...

  • Article
  • Open Access
9 Citations
6,274 Views
20 Pages

Structure of Ty1 Internally Initiated RNA Influences Restriction Factor Expression

  • Leszek Błaszczyk,
  • Marcin Biesiada,
  • Agniva Saha,
  • David J. Garfinkel and
  • Katarzyna J. Purzycka

10 April 2017

The long-terminal repeat retrotransposon Ty1 is the most abundant mobile genetic element in many Saccharomyces cerevisiae isolates. Ty1 retrotransposons contribute to the genetic diversity of host cells, but they can also act as an insertional mutage...

  • Article
  • Open Access
17 Citations
8,326 Views
16 Pages

Single-Round Infectious Particle Antiviral Screening Assays for the Japanese Encephalitis Virus

  • Chien-Yi Lu,
  • Mann-Jen Hour,
  • Ching-Ying Wang,
  • Su-Hua Huang,
  • Wen-Xiang Mu,
  • Yu-Chun Chang and
  • Cheng-Wen Lin

10 April 2017

Japanese Encephalitis virus (JEV) is a mosquito-borne flavivirus with a positive-sense single-stranded RNA genome that contains a big open reading frame (ORF) flanked by 5′- and 3′- untranslated regions (UTRs). Nearly 30,000 JE cases with 10,000 deat...

  • Article
  • Open Access
18 Citations
8,140 Views
12 Pages

9 April 2017

In contrast to lytic phages, filamentous phages are assembled in the inner membrane and secreted across the bacterial envelope without killing the host. For assembly and extrusion of the phage across the host cell wall, filamentous phages code for me...

  • Article
  • Open Access
2 Citations
6,760 Views
15 Pages

MimiLook: A Phylogenetic Workflow for Detection of Gene Acquisition in Major Orthologous Groups of Megavirales

  • Sourabh Jain,
  • Arup Panda,
  • Philippe Colson,
  • Didier Raoult and
  • Pierre Pontarotti

7 April 2017

With the inclusion of new members, understanding about evolutionary mechanisms and processes by which members of the proposed order, Megavirales, have evolved has become a key area of interest. The central role of gene acquisition has been shown in p...

  • Review
  • Open Access
39 Citations
10,142 Views
8 Pages

Identifying and Characterizing Interplay between Hepatitis B Virus X Protein and Smc5/6

  • Christine M. Livingston,
  • Dhivya Ramakrishnan,
  • Michel Strubin,
  • Simon P. Fletcher and
  • Rudolf K. Beran

3 April 2017

Hepatitis B X protein (HBx) plays an essential role in the hepatitis B virus (HBV) replication cycle, but the function of HBx has been elusive until recently. It was recently shown that transcription from the HBV genome (covalently-closed circular DN...

  • Communication
  • Open Access
388 Citations
19,056 Views
9 Pages

How to Name and Classify Your Phage: An Informal Guide

  • Evelien Adriaenssens and
  • J. Rodney Brister

3 April 2017

With this informal guide, we try to assist both new and experienced phage researchers through two important stages that follow phage discovery; that is, naming and classification. Providing an appropriate name for a bacteriophage is not as trivial as...

  • Article
  • Open Access
36 Citations
7,042 Views
11 Pages

A Chinese Variant Marek’s Disease Virus Strain with Divergence between Virulence and Vaccine Resistance

  • Guo-rong Sun,
  • Yan-ping Zhang,
  • Hong-chao Lv,
  • Lin-yi Zhou,
  • Hong-yu Cui,
  • Yu-long Gao,
  • Xiao-le Qi,
  • Yong-qiang Wang,
  • Kai Li and
  • Chang-jun Liu
  • + 3 authors

3 April 2017

Marek’s disease (MD) virus (MDV) has been evolving continuously, leading to increasing vaccination failure. Here, the MDV field strain BS/15 was isolated from a severely diseased Chinese chicken flock previously vaccinated with CVI988. To explore the...

  • Article
  • Open Access
6 Citations
5,398 Views
13 Pages

1 April 2017

Dendrolimus punctatus cypovirus (DpCPV) is an important pathogen of D. punctatus, but little is known about the mechanisms of DpCPV infection. Here, we investigated the effects of VP3, VP4 and VP5 structural proteins on the viral invasion. Both the C...

  • Brief Report
  • Open Access
28 Citations
7,717 Views
12 Pages

Identification of HIV-1 Tat-Associated Proteins Contributing to HIV-1 Transcription and Latency

  • Maxime Junior Jean,
  • Derek Power,
  • Weili Kong,
  • Huachao Huang,
  • Netty Santoso and
  • Jian Zhu

1 April 2017

Human immunodeficiency virus type 1 (HIV-1) Tat is a virus-encoded trans-activator that plays a central role in viral transcription. We used our recently developed parallel analysis of in vitro translated open reading frames (ORFs) (PLATO) approach t...

  • Article
  • Open Access
16 Citations
8,456 Views
15 Pages

1 April 2017

Of the more than 150 human rhinovirus (RV) serotypes, 89 utilize intercellular adhesion molecule-1 (ICAM-1) for cell entry. These belong either to species A or B. We recently demonstrated that RV-B14 and RV-A89, despite binding this same receptor, ar...

  • Review
  • Open Access
127 Citations
11,854 Views
18 Pages

1 April 2017

Free-living amoebae (FLA) are parasites within both humans and animals causing a wide range of symptoms and act as hosts of, and vehicles for phylogenetically diverse microorganisms, called endocytobionts. The interaction of the FLA with sympatric mi...

  • Review
  • Open Access
113 Citations
17,796 Views
17 Pages

30 March 2017

Several cellular functions such as apoptosis, cellular proliferation, inflammation, and immune regulation involve the tumor necrosis factor-α (TNF)/TNF receptor (TNFR) pathway. Human immunodeficiency virus 1 (HIV-1) interacts with the TNF/TNFR pathwa...

  • Article
  • Open Access
26 Citations
6,608 Views
13 Pages

Simultaneous Detection of Both RNA and DNA Viruses Infecting Dry Bean and Occurrence of Mixed Infections by BGYMV, BCMV and BCMNV in the Central-West Region of Mexico

  • Elizabeth Chiquito-Almanza,
  • Jorge A. Acosta-Gallegos,
  • Nadia C. García-Álvarez,
  • Eduardo R. Garrido-Ramírez,
  • Victor Montero-Tavera,
  • Lorenzo Guevara-Olvera and
  • José L. Anaya-López

30 March 2017

A multiplex reverse transcription polymerase chain reaction (RT-PCR) assay was developed to simultaneously detect bean common mosaic virus (BCMV), bean common mosaic necrotic virus (BCMNV), and bean golden yellow mosaic virus (BGYMV) from common bean...

  • Article
  • Open Access
7 Citations
5,502 Views
16 Pages

The Envelope Gene of Hepatitis B Virus Is Implicated in Both Differential Virion Secretion and Genome Replication Capacities between Genotype B and Genotype C Isolates

  • Haodi Jia,
  • Yanli Qin,
  • Chaoyang Chen,
  • Fei Zhang,
  • Cheng Li,
  • Li Zong,
  • Yongxiang Wang,
  • Jiming Zhang,
  • Jisu Li and
  • Shuping Tong
  • + 1 author

28 March 2017

Chronic infection by hepatitis B virus (HBV) genotype C is associated with a prolonged replicative phase and an increased risk of liver cancer, compared with genotype B infection. We previously found lower replication capacity but more efficient viri...

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Viruses - ISSN 1999-4915