The Discovery of Antibacterial Cembranoids from the Soft Coral Lobophytum crassum by DeepSAT Analysis
Abstract
1. Introduction
2. Results
2.1. Utilizing DeepSAT to Localize the Target Compound
2.2. Structural Identification of Compounds 1–12
2.3. In Vitro Biological Assay
3. Materials and Methods
3.1. General Experimental Procedures
3.2. Animal Materials
3.3. DeepSAT Analysis
3.4. Extraction and Isolation
3.4.1. Compound 1
3.4.2. Compound 2
3.4.3. Compound 3
3.4.4. Compound 4
3.4.5. Compound 5
3.4.6. Compound 6
3.4.7. Compound 7
3.4.8. Compound 8
3.5. Calculation Section
3.6. Antibacterial Activity Bioassays
3.7. Cytotoxicity Testing
4. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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| No. | δH Mult. (J in Hz) | |||
|---|---|---|---|---|
| 1 | 2 | 3 | 4 | |
| 2 | 5.43 m | 5.43 m | 5.53 m | 4.44 d (9.0) |
| 3 | 5.30 d (9.7) | 5.30 d (9.9) | 5.24 d (10.0) | 5.65 d (9.0) |
| 5a | 2.36 m | 2.35 m | 2.33 m | 2.42 m |
| 5b | 2.36 m | 2.35 m | 2.33 m | 2.30 m |
| 6a | 1.75 m | 1.81 m | 1.97 m | 2.05 m |
| 6b | 1.75 m | 1.71 td (5.4, 3.9) | 1.70 m | 1.71 m |
| 7 | 2.67 m | 2.71 t (5.3) | 2.87 m | 2.93 dd (7.3, 3.8) |
| 9a | 1.80 m | 1.93 m | 2.36 m | 2.09 m |
| 9b | 1.34 ddd (13.3, 7.7, 5.0) | 1.51 m | 0.99 td (13.3, 3.2) | 1.03 td (13.2, 3.4) |
| 10a | 1.70 m | 1.56 s | 2.25 m | 2.27 m |
| 10b | 1.50 m | 1.39 ddt (14.0, 8.6, 5.9) | 1.93 m | 1.91 m |
| 11 | 5.13 dd (7.5, 4.0) | 4.24 dd (8.8, 4.0) | 5.12 m | 5.02 m |
| 13a | 2.03 m | 2.09 m | 1.93 m | 2.11 m |
| 13b | 2.03 m | 1.99 m | 1.93 m | 2.05 m |
| 14a | 2.14 m | 2.17 m | 2.55 dd (14.1, 11.1, 7.9) | 2.47 m |
| 14b | 2.14 m | 2.09 m | 1.70 m | 2.09 m |
| 16a | 4.55 dd (11.7, 4.5) | 4.56 dd (11.9, 5.2) | 4.50 m | 4.60 m |
| 16b | 4.46 dd (11.6, 3.6) | 4.46 m | 4.50 m | 4.32 dt (13.1, 2.3) |
| 17a | 1.67 s | 1.68 s | 1.66 s | 5.43 t (2.5) |
| 17b | 5.23 t (2.2) | |||
| 18 | 1.78 s | 1.78 s | 1.82 s | 1.81 s |
| 19a | 1.25 s | 1.27 s | 4.42 d (12.1) | 1.29 s |
| 19b | 3.94 d (12.1) | |||
| 20a | 5.00 s | 5.11 dt (21.1, 1.2) | 1.60 s | 1.60 s |
| 20b | 4.95 s | |||
| OAc | 2.08 s | 2.12 s | 1.97 s | |
| -OOH | 7.96 s | |||
| No. | δC, Type | |||
|---|---|---|---|---|
| 1 | 2 | 3 | 4 | |
| 1 | 129.6, qC | 129.6, qC | 133.2, qC | 87.9, qC |
| 2 | 84.5, CH | 84.5, CH | 83.8, CH | 82.1, CH |
| 3 | 127.3, CH | 127.2, CH | 126.8, CH | 120.3, CH |
| 4 | 139.3, qC | 139.4, qC | 139.0, qC | 141.7, qC |
| 5 | 37.6, CH2 | 37.5, CH2 | 37.8, CH2 | 36.6, CH2 |
| 6 | 24.1, CH2 | 24.5, CH2 | 24.8, CH2 | 25.4, CH2 |
| 7 | 60.8, CH | 60.0, CH | 61.1, CH | 62.5, CH |
| 8 | 60.7, qC | 60.3, qC | 59.9, qC | 60.1, qC |
| 9 | 31.8, CH2 | 31.5, CH2 | 34.7, CH2 | 39.5, CH2 |
| 10 | 27.7, CH2 | 26.8, CH2 | 23.1, CH2 | 23.7, CH2 |
| 11 | 74.7, CH | 87.3, CH | 123.7, CH | 123.4, CH |
| 12 | 146.7, qC | 147.5, qC | 137.4, qC | 135.8, qC |
| 13 | 32.8, CH2 | 32.9, CH2 | 36.8, CH2 | 34.2, CH2 |
| 14 | 25.0, CH2 | 25.4, CH2 | 26.2, CH2 | 31.2, CH2 |
| 15 | 132.4, qC | 132.4, qC | 128.2, qC | 148.0, qC |
| 16 | 78.4, CH2 | 78.4, CH2 | 78.6, CH2 | 70.0, CH2 |
| 17 | 10.3, CH3 | 10.3, CH3 | 10.4, CH3 | 110.4, CH2 |
| 18 | 15.3, CH3 | 15.5, CH3 | 15.8, CH3 | 17.4, CH3 |
| 19 | 18.3, CH3 | 18.6, CH3 | 64.8, CH2 | 16.6, CH3 |
| 20 | 111.9, CH2 | 112.5, CH2 | 15.3, CH3 | 15.3, CH3 |
| OAc | 170.5, qC | 171.0, qC | 170.0, qC | |
| 21.4, CH3 | 21.0, CH3 | 22.5, CH3 | ||
| No. | δH Mult. (J in Hz) | |||
|---|---|---|---|---|
| 5 | 6 | 7 | 8 | |
| 2 | 5.61 d (8.0) | 5.40 m | ||
| 3a | 4.89 d (7.5) | 3.01 d (13.8) | 5.09 m | 5.24 dd (9.6, 1.2) |
| 3b | 2.27 m | |||
| 5a | 2.34 m | 5.85 dd (11.6, 5.0) | 2.62 dd (13.6, 4.0) | 2.34 ddd (13.6, 10.1, 6.3) |
| 5b | 2.34 m | 2.44 dd (13.6, 6.4) | 2.27 m | |
| 6a | 1.91 m | 2.64 dd (14.9, 11.4) | 1.93 dddd (14.0, 12.8, 6.4, 2.7) | 1.62 m |
| 6b | 1.48 ddt (14.3, 11.2, 5.7) | 1.73 m | 1.43 m | 1.43 m |
| 7 | 2.66 dd (6.3, 3.6) | 2.56 d (8.1) | 2.65 d (2.9) | 3.57 dd (11.4, 2.1) |
| 9a | 2.14 m | 2.13 m | 2.11 m | 2.66 ddd (18.1, 10.5, 6.4) |
| 9b | 1.28 ddd (13.2, 12.5, 5.0) | 1.12 ddd (13.2, 12.7, 3.4) | 1.26 m | 2.57 ddd (18.1, 10.5, 6.6) |
| 10a | 2.25 m | 1.97 m | 2.24 tdd (14.1, 11.2, 4.9) | 2.43 ddd (12.9, 10.5, 6.6) |
| 10b | 2.14 m | 1.85 m | 2.13 m | 1.79 m |
| 11 | 5.13 d (10.1) | 5.07 d (10.6) | 5.13 d (10.9) | |
| 12 | 3.79 h (6.1) | |||
| 13a | 2.34 m | 2.46 ddd (14.0, 8.2, 3.3) | 2.67 m | 1.49 m |
| 13b | 1.99 ddd (14.1, 11.3, 3.3) | 2.27 m | 2.08 m | 1.49 m |
| 14a | 2.74 td (12.0, 7.4) | 2.27 m | 1.81 m | 2.02 m |
| 14b | 1.87 m | 2.08 m | 1.81 m | 2.02 m |
| 16a | 3.82 q (10.0) | 3.82 d (9.9) | 4.53 dd (11.6, 5.0) | |
| 16b | 3.82 q (10.0) | 3.66 d (9.9) | 4.45 ddt (11.7, 2.5, 1.2) | |
| 17 | 1.83 s | 1.49 s | 1.47 s | 1.65 s |
| 18 | 1.74 s | 1.87 s | 1.77 d (1.2) | 1.76 d (0.8) |
| 19 | 1.17 s | 1.23 s | 1.14 s | 1.35 s |
| 20 | 1.68 s | 1.64 s | 1.61 s | 1.19 d (6.1) |
| 2-OMe | 3.21 s | |||
| No. | δC, Type | |||
|---|---|---|---|---|
| 5 | 6 | 7 | 8 | |
| 1 | 162.2, qC | 71.3, qC | 70.9, qC | 133.2, qC |
| 2 | 79.0, CH | 103.8, qC | 108.7, qC | 84.9, CH |
| 3 | 121.0, CH | 36.4, CH2 | 120.9, CH | 127.0, CH |
| 4 | 141.8, qC | 132.0, qC | 142.5, qC | 139.0, qC |
| 5 | 30.4, CH2 | 128.5, CH | 28.7, CH2 | 35.8, CH2 |
| 6 | 26.7, CH2 | 29.2, CH2 | 26.4, CH2 | 27.2, CH2 |
| 7 | 64.3, CH | 64.7, CH | 65.1, CH | 74.1, CH |
| 8 | 60.4, qC | 59.5, qC | 60.6, qC | 89.7, qC |
| 9 | 37.5, CH2 | 39.0, CH2 | 37.6, CH2 | 30.0, CH2 |
| 10 | 24.2, CH2 | 25.9, CH2 | 24.0, CH2 | 27.6, CH2 |
| 11 | 125.9, CH | 124.6, CH | 124.3, CH | 178.2, qC |
| 12 | 134.3, qC | 135.7, qC | 135.2, qC | 68.3, CH |
| 13 | 38.8, CH2 | 34.9, CH2 | 35.5, CH2 | 37.6, CH2 |
| 14 | 25.5, CH2 | 24.4, CH2 | 26.5, CH2 | 21.6, CH2 |
| 15 | 122.8, qC | 64.5, qC | 64.0, qC | 128.9, qC |
| 16 | 174.9, qC | 69.8, CH2 | 68.7, CH2 | 78.3, CH2 |
| 17 | 8.6, CH3 | 12.7, CH3 | 12.5, CH3 | 10.3, CH3 |
| 18 | 22.5, CH3 | 25.0, CH3 | 23.3, CH3 | 15.6, CH3 |
| 19 | 16.6 CH3 | 16.2, CH3 | 16.4, CH3 | 23.6, CH3 |
| 20 | 15.2, CH3 | 15.5, CH3 | 15.6, CH3 | 24.0, CH3 |
| 2-OMe | 49.4, CH3 | |||
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Wu, B.; Yao, L.-G.; Su, M.-Z.; Hou, G.-G.; Li, S.-W.; Guo, Y.-W. The Discovery of Antibacterial Cembranoids from the Soft Coral Lobophytum crassum by DeepSAT Analysis. Mar. Drugs 2025, 23, 468. https://doi.org/10.3390/md23120468
Wu B, Yao L-G, Su M-Z, Hou G-G, Li S-W, Guo Y-W. The Discovery of Antibacterial Cembranoids from the Soft Coral Lobophytum crassum by DeepSAT Analysis. Marine Drugs. 2025; 23(12):468. https://doi.org/10.3390/md23120468
Chicago/Turabian StyleWu, Bing, Li-Gong Yao, Ming-Zhi Su, Gui-Ge Hou, Song-Wei Li, and Yue-Wei Guo. 2025. "The Discovery of Antibacterial Cembranoids from the Soft Coral Lobophytum crassum by DeepSAT Analysis" Marine Drugs 23, no. 12: 468. https://doi.org/10.3390/md23120468
APA StyleWu, B., Yao, L.-G., Su, M.-Z., Hou, G.-G., Li, S.-W., & Guo, Y.-W. (2025). The Discovery of Antibacterial Cembranoids from the Soft Coral Lobophytum crassum by DeepSAT Analysis. Marine Drugs, 23(12), 468. https://doi.org/10.3390/md23120468

