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Article

Precise Segmentation of COVID-19 Infected Lung from CT Images Based on Adaptive First-Order Appearance Model with Morphological/Anatomical Constraints

1
BioImaging Laboratory, Department of Bioengineering, University of Louisville, Louisville, KY 40292, USA
2
College of Computer and Information Science, Princess Nourah Bint Abdulrahman University, Riyadh 11564, Saudi Arabia
*
Authors to whom correspondence should be addressed.
Sensors 2021, 21(16), 5482; https://doi.org/10.3390/s21165482
Submission received: 11 June 2021 / Revised: 8 August 2021 / Accepted: 10 August 2021 / Published: 14 August 2021
(This article belongs to the Special Issue Computer Aided Diagnosis Sensors)

Abstract

A new segmentation technique is introduced for delineating the lung region in 3D computed tomography (CT) images. To accurately model the distribution of Hounsfield scale values within both chest and lung regions, a new probabilistic model is developed that depends on a linear combination of Gaussian (LCG). Moreover, we modified the conventional expectation-maximization (EM) algorithm to be run in a sequential way to estimate both the dominant Gaussian components (one for the lung region and one for the chest region) and the subdominant Gaussian components, which are used to refine the final estimated joint density. To estimate the marginal density from the mixed density, a modified k-means clustering approach is employed to classify the Gaussian subdominant components to determine which components belong properly to a lung and which components belong to a chest. The initial segmentation, based on the LCG-model, is then refined by the imposition of 3D morphological constraints based on a 3D Markov–Gibbs random field (MGRF) with analytically estimated potentials. The proposed approach was tested on CT data from 32 coronavirus disease 2019 (COVID-19) patients. Segmentation quality was quantitatively evaluated using four metrics: Dice similarity coefficient (DSC), overlap coefficient, 95th-percentile bidirectional Hausdorff distance (BHD), and absolute lung volume difference (ALVD), and it achieved 95.67±1.83%, 91.76±3.29%, 4.86±5.01, and 2.93±2.39, respectively. The reported results showed the capability of the proposed approach to accurately segment healthy lung tissues in addition to pathological lung tissues caused by COVID-19, outperforming four current, state-of-the-art deep learning-based lung segmentation approaches.
Keywords: computed tomography (CT); lung; chest; segmentation; COVID-19 computed tomography (CT); lung; chest; segmentation; COVID-19

Share and Cite

MDPI and ACS Style

Sharafeldeen, A.; Elsharkawy, M.; Alghamdi, N.S.; Soliman, A.; El-Baz, A. Precise Segmentation of COVID-19 Infected Lung from CT Images Based on Adaptive First-Order Appearance Model with Morphological/Anatomical Constraints. Sensors 2021, 21, 5482. https://doi.org/10.3390/s21165482

AMA Style

Sharafeldeen A, Elsharkawy M, Alghamdi NS, Soliman A, El-Baz A. Precise Segmentation of COVID-19 Infected Lung from CT Images Based on Adaptive First-Order Appearance Model with Morphological/Anatomical Constraints. Sensors. 2021; 21(16):5482. https://doi.org/10.3390/s21165482

Chicago/Turabian Style

Sharafeldeen, Ahmed, Mohamed Elsharkawy, Norah Saleh Alghamdi, Ahmed Soliman, and Ayman El-Baz. 2021. "Precise Segmentation of COVID-19 Infected Lung from CT Images Based on Adaptive First-Order Appearance Model with Morphological/Anatomical Constraints" Sensors 21, no. 16: 5482. https://doi.org/10.3390/s21165482

APA Style

Sharafeldeen, A., Elsharkawy, M., Alghamdi, N. S., Soliman, A., & El-Baz, A. (2021). Precise Segmentation of COVID-19 Infected Lung from CT Images Based on Adaptive First-Order Appearance Model with Morphological/Anatomical Constraints. Sensors, 21(16), 5482. https://doi.org/10.3390/s21165482

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