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Article

Genome-Wide Analysis of the MADS-box Gene Family and Expression Analysis during Anther Development in Salvia miltiorrhiza

by
Songyue Chai
1,2,†,
Kexin Li
1,2,†,
Xuexue Deng
1,2,
Long Wang
1,2,
Yuanyuan Jiang
1,2,
Jinqiu Liao
1,3,
Ruiwu Yang
1,3 and
Li Zhang
1,2,*
1
Featured Medicinal Plants Sharing and Service Platform of Sichuan Province, Sichuan Agricultural University, Ya’an 625014, China
2
College of Science, Sichuan Agricultural University, Ya’an 625014, China
3
College of Life Sciences, Sichuan Agricultural University, Ya’an 625014, China
*
Author to whom correspondence should be addressed.
†
These authors contributed equally to this work.
Int. J. Mol. Sci. 2023, 24(13), 10937; https://doi.org/10.3390/ijms241310937
Submission received: 4 May 2023 / Revised: 26 June 2023 / Accepted: 27 June 2023 / Published: 30 June 2023
(This article belongs to the Special Issue Horticultural Crop Improvement: A New Era for Plant Molecular Research 2.0)
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Abstract

MADS-box genes constitute a large family of transcription factors that play important roles in plant growth and development. However, our understanding of MADS-box genes involved in anther development and male sterility in Salvia miltiorrhiza is still limited. In this study, 63 MADS-box genes were identified from the genome of the male sterility ecotype Sichuan S. miltiorrhiza (S. miltiorrhiza_SC) unevenly distributed among eight chromosomes. Phylogenetic analysis classified them into two types and 17 subfamilies. They contained 1 to 12 exons and 10 conserved motifs. Evolution analysis showed that segmental duplication was the main force for the expansion of the SmMADS gene family, and duplication gene pairs were under purifying selection. Cis-acting elements analysis demonstrated that the promoter of SmMADS genes contain numerous elements associated with plant growth and development, plant hormones, and stress response. RNA-seq showed that the expression levels of B-class and C-class SmMADS genes were highly expressed during anther development, with SmMADS11 likely playing an important role in regulating anther development and male fertility in S. miltiorrhiza_SC. Overall, this study provides a comprehensive analysis of the MADS-box gene family in S. miltiorrhiza, shedding light on their potential role in anther development and male sterility.
Keywords: Salvia miltiorrhiza; MADS-box; genome-wide; expression patterns; anther development Salvia miltiorrhiza; MADS-box; genome-wide; expression patterns; anther development

Share and Cite

MDPI and ACS Style

Chai, S.; Li, K.; Deng, X.; Wang, L.; Jiang, Y.; Liao, J.; Yang, R.; Zhang, L. Genome-Wide Analysis of the MADS-box Gene Family and Expression Analysis during Anther Development in Salvia miltiorrhiza. Int. J. Mol. Sci. 2023, 24, 10937. https://doi.org/10.3390/ijms241310937

AMA Style

Chai S, Li K, Deng X, Wang L, Jiang Y, Liao J, Yang R, Zhang L. Genome-Wide Analysis of the MADS-box Gene Family and Expression Analysis during Anther Development in Salvia miltiorrhiza. International Journal of Molecular Sciences. 2023; 24(13):10937. https://doi.org/10.3390/ijms241310937

Chicago/Turabian Style

Chai, Songyue, Kexin Li, Xuexue Deng, Long Wang, Yuanyuan Jiang, Jinqiu Liao, Ruiwu Yang, and Li Zhang. 2023. "Genome-Wide Analysis of the MADS-box Gene Family and Expression Analysis during Anther Development in Salvia miltiorrhiza" International Journal of Molecular Sciences 24, no. 13: 10937. https://doi.org/10.3390/ijms241310937

APA Style

Chai, S., Li, K., Deng, X., Wang, L., Jiang, Y., Liao, J., Yang, R., & Zhang, L. (2023). Genome-Wide Analysis of the MADS-box Gene Family and Expression Analysis during Anther Development in Salvia miltiorrhiza. International Journal of Molecular Sciences, 24(13), 10937. https://doi.org/10.3390/ijms241310937

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