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24 pages, 3027 KiB  
Article
Resisting the Final Line: Phenotypic Detection of Resistance to Last-Resort Antimicrobials in Gram-Negative Bacteria Isolated from Wild Birds in Northern Italy
by Maria Cristina Rapi, Joel Filipe, Laura Filippone Pavesi, Stefano Raimondi, Maria Filippa Addis, Maria Pia Franciosini and Guido Grilli
Animals 2025, 15(15), 2289; https://doi.org/10.3390/ani15152289 - 5 Aug 2025
Abstract
Antimicrobial resistance (AMR) is a growing global health threat, with wild birds increasingly recognized as potential reservoirs of resistant pathogens and as sentinels of environmental AMR. This study investigated the occurrence and AMR profiles of Gram-negative bacteria isolated from wild birds that died [...] Read more.
Antimicrobial resistance (AMR) is a growing global health threat, with wild birds increasingly recognized as potential reservoirs of resistant pathogens and as sentinels of environmental AMR. This study investigated the occurrence and AMR profiles of Gram-negative bacteria isolated from wild birds that died at the Wildlife Rescue Center in Vanzago, Lombardy, in 2024. Cloacal swabs were collected from 112 birds representing various ecological categories. A total of 157 Gram-negative bacteria were isolated and identified, including clinically relevant genera and species, such as Escherichia coli, Klebsiella pneumoniae, Enterobacter spp., Salmonella spp., Pseudomonas aeruginosa, and Acinetobacter baumannii. Antimicrobial susceptibility testing revealed resistance to first-line and critically important antimicrobials, including those exclusively authorized for human use. Notably, a phenotype compatible with Extended-Spectrum Beta-Lactamase (ESBL) production was detected in four out of ten (40%) K. pneumoniae isolates. In addition, 20 out of the 157 (12.7%) isolated bacteria phenotypically exhibited a resistance profile indicative of AmpC beta-lactamase (AmpC) production, including Enterobacter spp. and P. aeruginosa. Resistance patterns were particularly interesting in birds with carnivorous, scavenging, or migratory-associated behaviors. These findings highlight the role of wild birds in the ecology and dissemination of antimicrobial-resistant bacteria (ARB) and highlight the need for wildlife-based AMR monitoring programs as part of a One Health approach. Full article
(This article belongs to the Section Birds)
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15 pages, 2361 KiB  
Article
Galacto-Oligosaccharides Exert Bifidogenic Effects at Capsule-Compatible Ultra-Low Doses
by Lucien F. Harthoorn, Jasmine Heyse, Aurélien Baudot, Ingmar A. J. van Hengel and Pieter Van den Abbeele
Metabolites 2025, 15(8), 530; https://doi.org/10.3390/metabo15080530 - 5 Aug 2025
Abstract
Background: Prebiotics are selectively used by host microorganisms to promote health. Because effective prebiotic doses (1.5–30 g/day) often require inconvenient delivery formats, this study aims to explore whether capsule-compatible doses of galacto-oligosaccharides (GOS) can effectively modulate the gut microbiome. Methods: The impact of [...] Read more.
Background: Prebiotics are selectively used by host microorganisms to promote health. Because effective prebiotic doses (1.5–30 g/day) often require inconvenient delivery formats, this study aims to explore whether capsule-compatible doses of galacto-oligosaccharides (GOS) can effectively modulate the gut microbiome. Methods: The impact of Bimuno® GOS (Reading, UK) at 0.5, 0.75, 1.83, and 3.65 g on the adult gut microbiome was assessed using the ex vivo SIFR® technology (n = 8), a clinically validated, bioreactor-based technology. Results: The GOS were rapidly fermented and significantly increased beneficial Bifidobacterium species (B. adolescentis, B. bifidum, and B. longum), even at the lowest tested dose. In doing so, GOS strongly promoted SCFA production, particularly acetate (significant from 0.5 g) and butyrate (significant from 0.75 g). Gas production only mildly increased, likely as Bifidobacterium species do not produce gases. Based on the ability of the SIFR® technology to cultivate strictly anaerobic, hard-to-culture gut microbes, unlike in past in vitro studies, we elucidated that GOS also enriched specific Lachnospiraceae species. Besides Anaerobutyricum hallii, this included Bariatricus comes, Blautia species (B. massiliensis, Blautia_A, B. faecis), Oliverpabstia intestinalis, Mediterraneibacter faecis, and Fusicatenibacter species. Finally, GOS also promoted propionate (significant from 0.75 g), linked to increases in Phocaeicola vulgatus. Conclusions: GOS displayed prebiotic potential at capsule-compatible doses, offering greater flexibility in nutritional product formulation and consumer convenience. Notably, the strong response at the lowest dose suggests effective microbiome modulation at lower levels than previously expected. Full article
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19 pages, 2164 KiB  
Article
Community Structure, Growth-Promoting Potential, and Genomic Analysis of Seed-Endophytic Bacteria in Stipagrostis pennata
by Yuanyuan Yuan, Shuyue Pang, Wenkang Niu, Tingting Zhang and Lei Ma
Microorganisms 2025, 13(8), 1754; https://doi.org/10.3390/microorganisms13081754 - 27 Jul 2025
Viewed by 249
Abstract
Stipagrostis pennata is an important plant in desert ecosystems. Its seed-endophytic bacteria may play a critical role in plant growth and environmental adaptation processes. This study systematically analyzed the community composition and potential plant growth-promoting (PGP) functions of seed-endophytic bacteria associated with S. [...] Read more.
Stipagrostis pennata is an important plant in desert ecosystems. Its seed-endophytic bacteria may play a critical role in plant growth and environmental adaptation processes. This study systematically analyzed the community composition and potential plant growth-promoting (PGP) functions of seed-endophytic bacteria associated with S. pennata. The results showed that while the overall diversity of bacterial communities from different sampling sites was similar, significant differences were observed in specific functional genes and species abundances. Nine endophytic bacterial strains were isolated from the seeds, among which Bacillus altitudinis strain L7 exhibited phosphorus solubilizing capabilities, nitrogen fixing, IAA production, siderophore generation, and multi-hydrolytic enzyme activities. Additionally, the genomic sequencing of L7 revealed the key genes involved in plant growth promotion and environmental adaptation, including Na+ efflux systems, K+ transport systems, compatible solute synthesis genes, and the gene clusters associated with nitrogen metabolism, IAA synthesis, phosphate solubilization, and siderophore synthesis. Strain L7 exhibits salt and osmotic stress tolerance while promoting plant growth, providing a promising candidate for desert microbial resource utilization and plant biostimulant development. Full article
(This article belongs to the Section Plant Microbe Interactions)
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18 pages, 2710 KiB  
Article
Enriching Urban Life with AI and Uncovering Creative Solutions: Enhancing Livability in Saudi Cities
by Mohammed A. Albadrani
Sustainability 2025, 17(14), 6603; https://doi.org/10.3390/su17146603 - 19 Jul 2025
Viewed by 460
Abstract
This paper examines how artificial intelligence (AI) can be strategically deployed to enhance urban planning and environmental livability in Riyadh by generating data-driven, people-centric design interventions. Unlike previous studies that concentrate primarily on visualization, this research proposes an integrative appraisal framework that combines [...] Read more.
This paper examines how artificial intelligence (AI) can be strategically deployed to enhance urban planning and environmental livability in Riyadh by generating data-driven, people-centric design interventions. Unlike previous studies that concentrate primarily on visualization, this research proposes an integrative appraisal framework that combines AI-generated design with site-specific environmental data and native vegetation typologies. This study was conducted across key jurisdictional areas including the Northern Ring Road, King Abdullah Road, Al Rabwa, Al-Malaz, Al-Suwaidi, Al-Batha, and King Fahd Road. Using AI tools, urban scenarios were developed to incorporate expanded pedestrian pathways (up to 3.5 m), dedicated bicycle lanes (up to 3.0 m), and ecologically adaptive green buffer zones featuring native drought-resistant species such as Date Palm, Acacia, and Sidr. The quantitative analysis of post-intervention outcomes revealed surface temperature reductions of 3.2–4.5 °C and significant improvements in urban esthetics, walkability, and perceived safety—measured on a five-point Likert scale with 80–100% increases in user satisfaction. Species selection was validated for ecological adaptability, minimal maintenance needs, and compatibility with Riyadh’s sandy soils. This study directly supports the Kingdom of Saudi Arabia’s Vision 2030 by demonstrating how emerging technologies like AI can drive smart, sustainable urban transformation. It aligns with Vision 2030’s urban development goals under the Quality-of-Life Program and environmental sustainability pillar, promoting healthier, more connected cities with elevated livability standards. The research not only delivers practical design recommendations for planners seeking to embed sustainability and digital innovation in Saudi urbanism but also addresses real-world constraints such as budgetary limitations and infrastructure integration. Full article
(This article belongs to the Special Issue Smart Cities for Sustainable Development)
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18 pages, 1436 KiB  
Article
Application of Platelet-Rich Fibrin and Concentrated Growth Factors as Carriers for Antifungal Drugs—In Vitro Study
by Wojciech Niemczyk, Małgorzata Kępa, Jacek Żurek, Ali Aboud, Dariusz Skaba and Rafał Wiench
J. Clin. Med. 2025, 14(14), 5111; https://doi.org/10.3390/jcm14145111 - 18 Jul 2025
Viewed by 242
Abstract
Background: Fungal infections, particularly those caused by Candida species, pose a serious threat to immunocompromised individuals, and therapeutic options are limited due to toxicity and resistance concerns. This in vitro study aimed to explore the feasibility of using liquid fractions of autologous [...] Read more.
Background: Fungal infections, particularly those caused by Candida species, pose a serious threat to immunocompromised individuals, and therapeutic options are limited due to toxicity and resistance concerns. This in vitro study aimed to explore the feasibility of using liquid fractions of autologous platelet concentrates (APCs), namely concentrated platelet-rich fibrin (c-PRF) and liquid-phase concentrated growth factor (LPCGF), as carriers for antifungal drugs. Methods: The research was conducted in two phases: first, to evaluate the inherent antifungal properties of different APCs; and second, to assess their effectiveness as drug carriers for fluconazole and voriconazole against Candida albicans, Candida glabrata, and Candida krusei. Results: Results showed that APCs alone exhibited no direct antifungal effects. However, when combined with antifungal agents, notable inhibition zones were observed—especially with voriconazole against C. krusei and fluconazole against C. glabrata using c-PRF. Both c-PRF and LPCGF were compatible with the drugs and did not hinder clot formation. Conclusions: These findings suggest that APCs can act as effective vehicles for localized antifungal drug delivery and warrant further investigation for clinical application in treating fungal-related oral diseases. Full article
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15 pages, 2159 KiB  
Article
Selection and Evaluation of Phosphate-Solubilizing Fungal Consortia Inoculated into Three Varieties of Coffea arabica Under Greenhouse Conditions
by Yamel del Carmen Perea-Rojas, Rosa María Arias and Rosario Medel-Ortíz
Microbiol. Res. 2025, 16(7), 162; https://doi.org/10.3390/microbiolres16070162 - 17 Jul 2025
Viewed by 475
Abstract
Phosphorus-solubilizing fungi represent a viable alternative to traditional fertilizers for use in coffee cultivation. The aim of this work was to select fungal consortia with a high phosphorus-solubilizing capacity for application to three varieties of coffee plants under greenhouse conditions. The research comprised [...] Read more.
Phosphorus-solubilizing fungi represent a viable alternative to traditional fertilizers for use in coffee cultivation. The aim of this work was to select fungal consortia with a high phosphorus-solubilizing capacity for application to three varieties of coffee plants under greenhouse conditions. The research comprised three phases: Firstly, solubilizing strains were identified morphologically and molecularly. Secondly, compatibility tests were carried out to select combinations of phosphorus-solubilizing fungi. The selection of the consortia was evaluated based on their phosphorus-solubilizing capacity, and the consortia with the solubilizing activity were chosen for application to coffee plants. In the greenhouse phase, three coffee varieties were inoculated; the treatments involved single, dual, and triple inoculation, as well as a control without fungi. Five species were identified: Fusarium crassum, F. irregulare, Leptobacillium leptobactrum, Penicillium brevicompactum, and Trichoderma spirale, plus one strain of Absidia sp. The in vitro phase of the study revealed that 11 consortia demonstrated compatibility, and their phosphorus solubilization capacity and phosphatase activity were evaluated. As a result, four consortia with high phosphorus solubilization capacity were selected for inoculation on coffee plants. The greenhouse phase results showed that the three coffee varieties inoculated in consortia showed higher phosphorus availability in the substrate and significant growth. Full article
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22 pages, 6781 KiB  
Article
Seasonal Variation in Flower Traits, Visitor Traits, and Reproductive Success of Solanum sisymbriifolium Lamarck (Solanaceae) in the Rarh Region of West Bengal, India
by Ujjwal Layek, Pappu Majhi, Alokesh Das, Prakash Karmakar and Arijit Kundu
Biology 2025, 14(7), 865; https://doi.org/10.3390/biology14070865 - 16 Jul 2025
Viewed by 855
Abstract
The wild tomato (Solanum sisymbriifolium) is a globally distributed shrubby weed with both negative and positive impacts, including its invasive properties and the potential for pharmaceutical and traditional medicinal uses. Despite its ecological significance, the plant’s reproductive biology and pollination ecology [...] Read more.
The wild tomato (Solanum sisymbriifolium) is a globally distributed shrubby weed with both negative and positive impacts, including its invasive properties and the potential for pharmaceutical and traditional medicinal uses. Despite its ecological significance, the plant’s reproductive biology and pollination ecology remain poorly understood. This study aimed to investigate the floral biology, pollination ecology, and plant reproduction of the weed species. Some flower traits, such as flowering intensity, flower display size, and pollen and ovule production, peaked during spring, summer, and the monsoon, while flower longevity and stigmatic receptivity were the longest in winter. The plant species was self-compatible (ISI = 0.02), heavily depended on pollinators (IDP = 0.72), and experienced minimal pollination limitation (D = 0.10) under open-pollination conditions. Flower visitors’ traits (e.g., abundance, diversity, and richness) were higher in the spring, summer, and the monsoon, and these were lower in winter. The vital pollination service was provided by Amegilla zonata, Ceratina binghami, Lasioglossum cavernifrons, Nomia (Curvinomia) strigata, Tetragonula pagdeni, Xylocopa aestuans, Xylocopa amethystina, Xylocopa fenestrata, and Xylocopa latipes. Reproductive success, as indicated by fruit and seed set, varied seasonally, being higher during the spring–monsoon period and lower in winter. These findings support effective management of this weed species and help conserve the associated bee populations. Full article
(This article belongs to the Special Issue Pollination Biology)
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12 pages, 3211 KiB  
Article
CRISPR/Cas12a-Based One-Tube RT-RAA Assay for PoRV Genotyping
by Mingfang Bi, Zunbao Wang, Kaijie Li, Yuhe Ren, Dan Ma and Xiaobing Mo
Int. J. Mol. Sci. 2025, 26(14), 6846; https://doi.org/10.3390/ijms26146846 - 16 Jul 2025
Viewed by 335
Abstract
Porcine rotavirus (PoRV), a primary etiological agent of viral diarrhea in piglets, frequently co-infects with other enteric pathogens, exacerbating disease severity and causing substantial economic losses. Its genetic recombination capability enables cross-species transmission potential, posing public health risks. Globally, twelve G genotypes and [...] Read more.
Porcine rotavirus (PoRV), a primary etiological agent of viral diarrhea in piglets, frequently co-infects with other enteric pathogens, exacerbating disease severity and causing substantial economic losses. Its genetic recombination capability enables cross-species transmission potential, posing public health risks. Globally, twelve G genotypes and thirteen P genotypes have been identified, with G9, G5, G3, and G4 emerging as predominant circulating strains. The limited cross-protective immunity between genotypes compromises vaccine efficacy, necessitating genotype surveillance to guide vaccine development. While conventional molecular assays demonstrate sensitivity, they lack rapid genotyping capacity and face technical limitations. To address this, we developed a novel diagnostic platform integrating reverse transcription recombinase-aided amplification (RT-RAA) with CRISPR–Cas12a. This system employs universal primers for the simultaneous amplification of G4/G5/G9 genotypes in a single reaction, coupled with sequence-specific CRISPR recognition, achieving genotyping within 50 min at 37 °C with 100 copies/μL sensitivity. Clinical validation showed a high concordance with reverse transcription quantitative polymerase chain reaction (RT-qPCR). This advancement provides an efficient tool for rapid viral genotyping, vaccine compatibility evaluation, and optimized epidemic control strategies. Full article
(This article belongs to the Special Issue Protein Design and Engineering in Biochemistry)
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20 pages, 3037 KiB  
Article
An Automated Microfluidic Platform for In Vitro Raman Analysis of Living Cells
by Illya Klyusko, Stefania Scalise, Francesco Guzzi, Luigi Randazzini, Simona Zaccone, Elvira Immacolata Parrotta, Valeria Lucchino, Alessio Merola, Carlo Cosentino, Ulrich Krühne, Isabella Aquila, Giovanni Cuda, Enzo Di Fabrizio, Patrizio Candeloro and Gerardo Perozziello
Biosensors 2025, 15(7), 459; https://doi.org/10.3390/bios15070459 - 16 Jul 2025
Viewed by 383
Abstract
We present a miniaturized, inexpensive, and user-friendly microfluidic platform to support biological applications. The system integrates a mini-incubator providing controlled environmental conditions and housing a microfluidic device for long-term cell culture experiments. The incubator is designed to be compatible with standard inverted optical [...] Read more.
We present a miniaturized, inexpensive, and user-friendly microfluidic platform to support biological applications. The system integrates a mini-incubator providing controlled environmental conditions and housing a microfluidic device for long-term cell culture experiments. The incubator is designed to be compatible with standard inverted optical microscopes and Raman spectrometers, allowing for the non-invasive imaging and spectroscopic analysis of cell cultures in vitro. The microfluidic device, which reproduces a dynamic environment, was optimized to sustain a passive, gravity-driven flow of medium, eliminating the need for an external pumping system and reducing mechanical stress on the cells. The platform was tested using Raman analysis and adherent tumoral cells to assess proliferation prior and subsequent to hydrogen peroxide treatment for oxidative stress induction. The results demonstrated a successful adhesion of cells onto the substrate and their proliferation. Furthermore, the platform is suitable for carrying out optical monitoring of cultures and Raman analysis. In fact, it was possible to discriminate spectra deriving from control and hydrogen peroxide-treated cells in terms of DNA backbone and cellular membrane modification effects provoked by reactive oxygen species (ROS) activity. The 800–1100 cm−1 band highlights the destructive effects of ROS on the DNA backbone’s structure, as its rupture modifies its vibration; moreover, unpaired nucleotides are increased in treated sample, as shown in the 1154–1185 cm−1 band. Protein synthesis deterioration, led by DNA structure damage, is highlighted in the 1257–1341 cm−1, 1440–1450 cm−1, and 1640–1670 cm−1 bands. Furthermore, membrane damage is emphasized in changes in the 1270, 1301, and 1738 cm−1 frequencies, as phospholipid synthesis is accelerated in an attempt to compensate for the membrane damage brought about by the ROS attack. This study highlights the potential use of this platform as an alternative to conventional culturing and analysis procedures, considering that cell culturing, optical imaging, and Raman spectroscopy can be performed simultaneously on living cells with minimal cellular stress and without the need for labeling or fixation. Full article
(This article belongs to the Special Issue Microfluidic Devices for Biological Sample Analysis)
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24 pages, 1711 KiB  
Review
Hybridization of Lignocellulosic Biomass into Aluminum-Based Materials: Comparing the Cases of Aluminum Matrix Composites and Fiber Metal Laminates
by Cristiano Fragassa and Carlo Santulli
J. Compos. Sci. 2025, 9(7), 356; https://doi.org/10.3390/jcs9070356 - 8 Jul 2025
Viewed by 425
Abstract
Introducing and compacting lignocellulosic biomass in aluminum structures, though recommendable in terms of higher sustainability, the potential use of agro-waste and significant weight reduction, still represents a challenge. This is due to the variability of biomass performance and to its limited compatibility with [...] Read more.
Introducing and compacting lignocellulosic biomass in aluminum structures, though recommendable in terms of higher sustainability, the potential use of agro-waste and significant weight reduction, still represents a challenge. This is due to the variability of biomass performance and to its limited compatibility with the metal. Another question may concern possible moisture penetration in the structure, which may reduce environmental resistance and result in local degradation, such as wear or even corrosion. Despite these limitations, this hybridization enjoys increasing success. Two forms are possibly available for this: introduction into metal matrix composites (MMCs), normally in the form of char from biomass combustion, or laminate reinforcement as the core for fiber metal laminates (FMLs). These two cases are treated alongside each other in this review, first because they may represent two combined options for recycling the same biomass into high-profile structures, aimed primarily at the aerospace industry. Moreover, as discussed above, the effect on the aluminum alloy can be compared and the forces to which they are subjected might be of a similar type, most particularly in terms of their hardness and impact. Both cases considered, MMCs and FMLs involved over time many lignocellulosic residues, starting from the most classical bast species, i.e., flax, hemp, sisal, kenaf, etc., and extending also to less diffuse ones, especially in view of the introduction of biomass as secondary, or residual, raw materials. Full article
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22 pages, 3237 KiB  
Article
Local Polar Coordinate Feature Representation and Heterogeneous Fusion Framework for Accurate Leaf Image Retrieval
by Mengjie Ye, Yong Cheng, Yongqi Yuan, De Yu and Ge Jin
Symmetry 2025, 17(7), 1049; https://doi.org/10.3390/sym17071049 - 3 Jul 2025
Viewed by 231
Abstract
Leaf shape is a crucial visual cue for plant recognition. However, distinguishing among plants with high inter-class shape similarity remains a significant challenge, especially among cultivars within the same species where shape differences can be extremely subtle. To address this issue, we propose [...] Read more.
Leaf shape is a crucial visual cue for plant recognition. However, distinguishing among plants with high inter-class shape similarity remains a significant challenge, especially among cultivars within the same species where shape differences can be extremely subtle. To address this issue, we propose a novel shape representation and an advanced heterogeneous fusion framework for accurate leaf image retrieval. Specifically, based on the local polar coordinate system, multiscale analysis, and statistical histograms, we first propose local polar coordinate feature representation (LPCFR), which captures spatial distribution from two orthogonal directions while encoding local curvature characteristics. Next, we present heterogeneous feature fusion with exponential weighting and Ranking (HFER), which enhances the compatibility and robustness of fused features by applying exponential weighted normalization and ranking-based encoding within neighborhood distance measures. Extensive experiments on both species-level and cultivar-level leaf datasets demonstrate that the proposed representation effectively captures shape features, and the fusion framework successfully integrates heterogeneous features, outperforming state-of-the-art (SOTA) methods. Full article
(This article belongs to the Section Computer)
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17 pages, 1873 KiB  
Article
Intracytoplasmic Sperm Injection Using 20-Year-Old Cryopreserved Sperm Results in Normal, Viable, and Reproductive Offspring in Xenopus laevis: A Major Pioneering Achievement for Amphibian Conservation
by Louise Péricard, Sébastien Le Mével, Olivier Marquis, Yann Locatelli and Laurent Coen
Animals 2025, 15(13), 1941; https://doi.org/10.3390/ani15131941 - 1 Jul 2025
Viewed by 971
Abstract
The significant decline in amphibians worldwide is demanding the development of reliable techniques to save species and their genetic diversity. Considerable efforts are currently in progress to develop assisted reproductive technologies (ARTs), focusing mainly on sperm cryopreservation and in vitro fertilization (IVF). In [...] Read more.
The significant decline in amphibians worldwide is demanding the development of reliable techniques to save species and their genetic diversity. Considerable efforts are currently in progress to develop assisted reproductive technologies (ARTs), focusing mainly on sperm cryopreservation and in vitro fertilization (IVF). In Xenopus, a simple and efficient transgenesis method based on the intracytoplasmic injection (ICSI) of cryoconserved sperm was developed several decades ago, allowing for quick generation of large numbers of transgenic animals, for biological research. Such a methodology could be critical for the recovery of species and their genetic diversity, contributing to amphibian conservation. However, this approach raised the question of whether the sperm preservation method used with ICSI is compatible with long-term storage. To address this question, animals were generated by ICSI using a twenty-year-old cryopreserved sperm preparation. Their development, behavior, and reproduction ability were compared with those of animals obtained using a recently frozen sperm preparation and those of animals obtained via IVF using fresh semen. Although lower than with IVF, we showed that fertilization rates using ICSI after 20 years of cryopreservation are similar to those of a recent preparation, with viable offspring leading to normal F2 generation. This pioneering achievement is proof of concept for long-term sperm cryopreservation using simple and readily available technologies for the conservation of endangered amphibians. Full article
(This article belongs to the Section Animal Reproduction)
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27 pages, 3680 KiB  
Article
Carbon Storage in Coffee Agroforestry Systems: Role of Native and Introduced Shade Trees in the Central Peruvian Amazon
by Noelito Salgado Veramendi, Lorena Estefani Romero-Chavez, Eldhy Sianina Huerto Pajuelo, Carolina del Carmen Ibarra Porras, Joseph Michael Cunyas-Camayo, Uriel Aldava Pardave, Geomar Vallejos-Torres and Richard Solórzano Acosta
Agriculture 2025, 15(13), 1415; https://doi.org/10.3390/agriculture15131415 - 30 Jun 2025
Viewed by 1290
Abstract
What is the potential impact on carbon storage of the native and introduced tree species commonly associated with coffee in the central Peruvian Amazon? Coffee is a pivotal crop within the Peruvian economy. Nevertheless, the establishment of new plantations—driven by the subsistence needs [...] Read more.
What is the potential impact on carbon storage of the native and introduced tree species commonly associated with coffee in the central Peruvian Amazon? Coffee is a pivotal crop within the Peruvian economy. Nevertheless, the establishment of new plantations—driven by the subsistence needs of smallholder farmers—has led to expansion into forested areas. Given the significance of this crop and the demonstrated ecosystem benefits of agroforestry systems (AFSs), the aim of this study was to evaluate the influence of native and introduced shade tree species on carbon storage in coffee plantations. This study was observational and exhibited characteristics of an unbalanced incomplete block design. Agroforestry systems (AFSs) with shade tree species such as Inga, Retrophyllum rospigliosii, Eucalyptus and Pinus, and three unshaded coffee plantations, were included in this study. The total carbon stored in each AFS was higher than in unshaded coffee plantations. Soil contributed between 47% and 91% to total carbon storage, shade trees (24–46%), coffee (2–7%), leaf litter (0.6–1.9%) and shrubs and herbaceous plants (0.02–0.3%). The AFS with R. rospigliosii achieved the highest carbon storage with 190.38 Mg ha−1, highlighting the compatibility of this species with coffee plantations, as well as its positive effect on climate change mitigation in deforested areas. Full article
(This article belongs to the Section Agricultural Soils)
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29 pages, 8935 KiB  
Article
Resveratrol Alleviates Inflammatory Response Through P2X7/NLRP3 Signaling Pathway: In Silico and In Vitro Evidence from Activated Microglia
by Bianca Fagan Bissacotti, Marcylene Vieira da Silveira, Charles Elias Assmann, Priscila Marquezan Copetti, André Flores dos Santos, Solange Binotto Fagan, João Augusto Pereira da Rocha, Maria Rosa Chitolina Schetinger, Vera Maria Melchiors Morsch, Nathieli Bianchin Bottari, Alencar Kolinski Machado and Aleksandro Schafer da Silva
Pharmaceuticals 2025, 18(7), 950; https://doi.org/10.3390/ph18070950 - 24 Jun 2025
Viewed by 587
Abstract
Background/Objectives: Chronic inflammation and inappropriate NLRP3 inflammasome regulation are related to many brain diseases. Purinergic mediators may play an important role in inflammation regulation and could be targeted for effective therapies for these illnesses. We evaluated resveratrol’s anti-neuroinflammatory potential in BV-2 microglia [...] Read more.
Background/Objectives: Chronic inflammation and inappropriate NLRP3 inflammasome regulation are related to many brain diseases. Purinergic mediators may play an important role in inflammation regulation and could be targeted for effective therapies for these illnesses. We evaluated resveratrol’s anti-neuroinflammatory potential in BV-2 microglia cells using an innovative in vitro method of NLRP3 inflammasome activation, correlating with the P2X7 purinergic receptor. Methods: In silico analyses were used to estimate resveratrol’s interaction with NLRP3, and its cytotoxicity was measured for 24, 48, and 72 h. Moreover, microglia were exposed to lipopolysaccharide and nigericin to activate the NLRP3 inflammasome and treated with resveratrol between these inflammatory agents. Results: It was found that resveratrol has binding compatible with modulating NLRP3. Specifically, 0.1–25 µM of resveratrol presented a favorable safety profile in BV-2 cells. Microglia exposed to the inflammatory agents had increased levels of oxidative species, the P2X7 receptor, and pro-inflammatory cytokines. However, resveratrol decreased the NLRP3, caspase-1, IL-1β, IL-6, and TNF-α mRNA levels and protein density; on the other hand, IL-10 was increased, acting as a protector, preventing exacerbated inflammation. Under resveratrol exposure, P2X7 was negatively expressed, regulating inflammation to establish homeostasis and microglial proliferation. Additionally, resveratrol activates the A1 adenosine receptor, possibly correlated with neuroprotective effects. Conclusions: We confirmed the anti-neuroinflammatory action of resveratrol via the P2X7 receptor and NLRP3’s combined modulation, regulating the cell cycle and reducing pro-inflammatory and oxidant agents. Considering this pathway, resveratrol could be a candidate for further investigations as a potential treatment against neuroinflammatory diseases. Full article
(This article belongs to the Special Issue Computational Methods in Drug Development)
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24 pages, 412 KiB  
Review
Application of Convolutional Neural Networks in Animal Husbandry: A Review
by Rotimi-Williams Bello, Roseline Oluwaseun Ogundokun, Pius A. Owolawi, Etienne A. van Wyk and Chunling Tu
Mathematics 2025, 13(12), 1906; https://doi.org/10.3390/math13121906 - 6 Jun 2025
Viewed by 739
Abstract
Convolutional neural networks (CNNs) and their application in animal husbandry have in-depth mathematical expressions, which usually revolve around how well they map input data such as images or video frames of animals to meaningful outputs like health status, behavior class, and identification. Likewise, [...] Read more.
Convolutional neural networks (CNNs) and their application in animal husbandry have in-depth mathematical expressions, which usually revolve around how well they map input data such as images or video frames of animals to meaningful outputs like health status, behavior class, and identification. Likewise, computer vision and deep learning models are driven by CNNs to act intelligently in improving productivity and animal management for sustainable animal husbandry. In animal husbandry, CNNs play a vital role in the management and monitoring of livestock’s health and productivity due to their high-performance accuracy in analyzing images and videos. Monitoring animals’ health is important for their welfare, food abundance, safety, and economic productivity. This paper aims to comprehensively review recent advancements and applications of relevant models that are based on CNNs for livestock health monitoring, covering the detection of their various diseases and classification of their behavior, for overall management gain. We selected relevant articles with various experimental results addressing animal detection, localization, tracking, and behavioral monitoring, validating the high-performance accuracy and efficiency of CNNs. Prominent anchor-based object detection models such as R-CNN (series), YOLO (series) and SSD (series), and anchor-free object detection models such as key-point based and anchor-point based are often used, demonstrating great versatility and robustness across various tasks. From the analysis, it is evident that more significant research contributions to animal husbandry have been made by CNNs. Limited labeled data, variation in data, low-quality or noisy images, complex backgrounds, computational demand, species-specific models, high implementation cost, scalability, modeling complex behaviors, and compatibility with current farm management systems are good examples of several notable challenges when applying CNNs in animal husbandry. By continued research efforts, these challenges can be addressed for the actualization of sustainable animal husbandry. Full article
(This article belongs to the Section E: Applied Mathematics)
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