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23 pages, 3810 KiB  
Article
Single-Nucleus Transcriptome Sequencing Unravels Physiological Differences in Holstein Cows Under Different Physiological States
by Peipei Li, Yaqiang Guo, Yanchun Bao, Caixia Shi, Lin Zhu, Mingjuan Gu, Risu Na and Wenguang Zhang
Genes 2025, 16(8), 931; https://doi.org/10.3390/genes16080931 (registering DOI) - 3 Aug 2025
Abstract
Background: Against the backdrop of the large-scale and intensive development of the livestock industry, enhancing the reproductive efficiency of cattle has become a crucial factor in industrial development. Holstein cows, as the most predominant dairy cattle breed globally, are characterized by high milk [...] Read more.
Background: Against the backdrop of the large-scale and intensive development of the livestock industry, enhancing the reproductive efficiency of cattle has become a crucial factor in industrial development. Holstein cows, as the most predominant dairy cattle breed globally, are characterized by high milk yield and excellent milk quality. However, their reproductive efficiency is comprehensively influenced by a variety of complex factors, and improving their reproductive performance faces numerous challenges. The ovary, as the core organ of the female reproductive system, plays a decisive role in embryonic development and pregnancy maintenance. It is not only the site where eggs are produced and developed but it also regulates the cow’s estrous cycle, ovulation process, and the establishment and maintenance of pregnancy by secreting various hormones. The normal functioning of the ovary is crucial for the smooth development of the embryo and the successful maintenance of pregnancy. Methods: Currently, traditional sequencing technologies have obvious limitations in deciphering ovarian function and reproductive regulatory mechanisms. To overcome the bottlenecks of traditional sequencing technologies, this study selected Holstein cows as the research subjects. Ovarian samples were collected from one pregnant and one non-pregnant Holstein cow, and single-nucleus transcriptome sequencing technology was used to conduct an in-depth study on the ovarian cells of Holstein cows. Results: By constructing a cell type-specific molecular atlas of the ovaries, nine different cell types were successfully identified. This study compared the proportions of ovarian cell types under different physiological states and found that the proportion of endothelial cells decreased during pregnancy, while the proportions of granulosa cells and luteal cells increased significantly. In terms of functional enrichment analysis, oocytes during both pregnancy and non-pregnancy play roles in the “cell cycle” and “homologous recombination” pathways. However, non-pregnant oocytes are also involved in the “progesterone-mediated oocyte maturation” pathway. Luteal cells during pregnancy mainly function in the “cortisol synthesis and secretion” and “ovarian steroidogenesis” pathways; non-pregnant luteal cells are mainly enriched in pathway processes such as the “AMPK signaling pathway”, “pyrimidine metabolism”, and “nucleotide metabolism”. Cell communication analysis reveals that there are 51 signaling pathways involved in the pregnant ovary, with endothelial cells, granulosa cells, and luteal cells serving as the core communication hubs. In the non-pregnant ovary, there are 48 pathways, and the interaction between endothelial cells and stromal cells is the dominant mode. Conclusions: This study provides new insights into the regulatory mechanisms of reproductive efficiency in Holstein cows. The differences in the proportions of ovarian cell types, functional pathways, and cell communication patterns under different physiological states, especially the increase in the proportions of granulosa cells and luteal cells during pregnancy and the specificity of related functional pathways, indicate that these cells play a crucial role in the reproductive process of cows. These findings also highlight the importance of ovarian cells in pathways such as “cell cycle”, “homologous recombination”, and “progesterone-mediated oocyte maturation”, as well as the cell communication mechanisms in regulating ovarian function and reproductive performance. Full article
(This article belongs to the Section Animal Genetics and Genomics)
21 pages, 4517 KiB  
Article
A Method Integrating the Matching Field Algorithm for the Three-Dimensional Positioning and Search of Underwater Wrecked Targets
by Huapeng Cao, Tingting Yang and Ka-Fai Cedric Yiu
Sensors 2025, 25(15), 4762; https://doi.org/10.3390/s25154762 (registering DOI) - 1 Aug 2025
Abstract
In this paper, a joint Matching Field Processing (MFP) Algorithm based on horizontal uniform circular array (UCA) is proposed for three-dimensional position of underwater wrecked targets. Firstly, a Marine search and rescue position model based on Minimum Variance Distortionless Response (MVDR) and matching [...] Read more.
In this paper, a joint Matching Field Processing (MFP) Algorithm based on horizontal uniform circular array (UCA) is proposed for three-dimensional position of underwater wrecked targets. Firstly, a Marine search and rescue position model based on Minimum Variance Distortionless Response (MVDR) and matching field quadratic joint Algorithm was proposed. Secondly, an MVDR beamforming method based on pre-Kalman filtering is designed to refine the real-time DOA estimation of the desired signal and the interference source, and the sound source azimuth is determined for prepositioning. The antenna array weights are dynamically adjusted according to the filtered DOA information. Finally, the Adaptive Matching Field Algorithm (AMFP) used the DOA information to calculate the range and depth of the lost target, and obtained the range and depth estimates. Thus, the 3D position of the lost underwater target is jointly estimated. This method alleviates the angle ambiguity problem and does not require a computationally intensive 2D spectral search. The simulation results show that the proposed method can better realise underwater three-dimensional positioning under certain signal-to-noise ratio conditions. When there is no error in the sensor coordinates, the positioning error is smaller than that of the baseline method as the SNR increases. When the SNR is 0 dB, with the increase in the sensor coordinate error, the target location error increases but is smaller than the error amplitude of the benchmark Algorithm. The experimental results verify the robustness of the proposed framework in the hierarchical ocean environment, which provides a practical basis for the deployment of rapid response underwater positioning systems in maritime search and rescue scenarios. Full article
(This article belongs to the Special Issue Sensor Fusion in Positioning and Navigation)
17 pages, 3062 KiB  
Article
Spatiotemporal Risk-Aware Patrol Planning Using Value-Based Policy Optimization and Sensor-Integrated Graph Navigation in Urban Environments
by Swarnamouli Majumdar, Anjali Awasthi and Lorant Andras Szolga
Appl. Sci. 2025, 15(15), 8565; https://doi.org/10.3390/app15158565 (registering DOI) - 1 Aug 2025
Viewed by 38
Abstract
This study proposes an intelligent patrol planning framework that leverages reinforcement learning, spatiotemporal crime forecasting, and simulated sensor telemetry to optimize autonomous vehicle (AV) navigation in urban environments. Crime incidents from Washington DC (2024–2025) and Seattle (2008–2024) are modeled as a dynamic spatiotemporal [...] Read more.
This study proposes an intelligent patrol planning framework that leverages reinforcement learning, spatiotemporal crime forecasting, and simulated sensor telemetry to optimize autonomous vehicle (AV) navigation in urban environments. Crime incidents from Washington DC (2024–2025) and Seattle (2008–2024) are modeled as a dynamic spatiotemporal graph, capturing the evolving intensity and distribution of criminal activity across neighborhoods and time windows. The agent’s state space incorporates synthetic AV sensor inputs—including fuel level, visual anomaly detection, and threat signals—to reflect real-world operational constraints. We evaluate and compare three learning strategies: Deep Q-Network (DQN), Double Deep Q-Network (DDQN), and Proximal Policy Optimization (PPO). Experimental results show that DDQN outperforms DQN in convergence speed and reward accumulation, while PPO demonstrates greater adaptability in sensor-rich, high-noise conditions. Real-map simulations and hourly risk heatmaps validate the effectiveness of our approach, highlighting its potential to inform scalable, data-driven patrol strategies in next-generation smart cities. Full article
(This article belongs to the Special Issue AI-Aided Intelligent Vehicle Positioning in Urban Areas)
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38 pages, 4443 KiB  
Review
The Role of Plant Growth-Promoting Bacteria in Soil Restoration: A Strategy to Promote Agricultural Sustainability
by Mario Maciel-Rodríguez, Francisco David Moreno-Valencia and Miguel Plascencia-Espinosa
Microorganisms 2025, 13(8), 1799; https://doi.org/10.3390/microorganisms13081799 - 1 Aug 2025
Viewed by 270
Abstract
Soil degradation resulting from intensive agricultural practices, the excessive use of agrochemicals, and climate-induced stresses has significantly impaired soil fertility, disrupted microbial diversity, and reduced crop productivity. Plant growth-promoting bacteria (PGPB) represent a sustainable biological approach to restoring degraded soils by modulating plant [...] Read more.
Soil degradation resulting from intensive agricultural practices, the excessive use of agrochemicals, and climate-induced stresses has significantly impaired soil fertility, disrupted microbial diversity, and reduced crop productivity. Plant growth-promoting bacteria (PGPB) represent a sustainable biological approach to restoring degraded soils by modulating plant physiology and soil function through diverse molecular mechanisms. PGPB synthesizes indole-3-acetic acid (IAA) to stimulate root development and nutrient uptake and produce ACC deaminase, which lowers ethylene accumulation under stress, mitigating growth inhibition. They also enhance nutrient availability by releasing phosphate-solubilizing enzymes and siderophores that improve iron acquisition. In parallel, PGPB activates jasmonate and salicylate pathways, priming a systemic resistance to biotic and abiotic stress. Through quorum sensing, biofilm formation, and biosynthetic gene clusters encoding antibiotics, lipopeptides, and VOCs, PGPB strengthen rhizosphere colonization and suppress pathogens. These interactions contribute to microbial community recovery, an improved soil structure, and enhanced nutrient cycling. This review synthesizes current evidence on the molecular and physiological mechanisms by which PGPB enhance soil restoration in degraded agroecosystems, highlighting their role beyond biofertilization as key agents in ecological rehabilitation. It examines advances in nutrient mobilization, stress mitigation, and signaling pathways, based on the literature retrieved from major scientific databases, focusing on studies published in the last decade. Full article
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22 pages, 6758 KiB  
Article
Screening of an FDA-Approved Drug Library: Menadione Induces Multiple Forms of Programmed Cell Death in Colorectal Cancer Cells via MAPK8 Cascades
by Liyuan Cao, Weiwei Song, Jinli Sun, Yang Ge, Wei Mu and Lei Li
Pharmaceuticals 2025, 18(8), 1145; https://doi.org/10.3390/ph18081145 - 31 Jul 2025
Viewed by 180
Abstract
Background: Colorectal cancer (CRC) is a prevalent gastrointestinal malignancy, ranking third in incidence and second in cancer-related mortality. Despite therapeutic advances, challenges such as chemotherapy toxicity and drug resistance persist. Thus, there is an urgent need for novel CRC treatments. However, developing [...] Read more.
Background: Colorectal cancer (CRC) is a prevalent gastrointestinal malignancy, ranking third in incidence and second in cancer-related mortality. Despite therapeutic advances, challenges such as chemotherapy toxicity and drug resistance persist. Thus, there is an urgent need for novel CRC treatments. However, developing new drugs is time-consuming and resource-intensive. As a more efficient approach, drug repurposing offers a promising alternative for discovering new therapies. Methods: In this study, we screened 1068 small molecular compounds from an FDA-approved drug library in CRC cells. Menadione was selected for further study based on its activity profile. Mechanistic analysis included a cell death pathway PCR array, differential gene expression, enrichment, and network analysis. Gene expressions were validated by RT-qPCR. Results: We identified menadione as a potent anti-tumor drug. Menadione induced three programmed cell death (PCD) signaling pathways: necroptosis, apoptosis, and autophagy. Furthermore, we found that the anti-tumor effect induced by menadione in CRC cells was mediated through a key gene: MAPK8. Conclusions: By employing methods of cell biology, molecular biology, and bioinformatics, we conclude that menadione can induce multiple forms of PCD in CRC cells by activating MAPK8, providing a foundation for repurposing the “new use” of the “old drug” menadione in CRC treatment. Full article
(This article belongs to the Section Medicinal Chemistry)
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11 pages, 217 KiB  
Article
Brain Injury Patterns and Short-TermOutcomes in Late Preterm Infants Treated with Hypothermia for Hypoxic Ischemic Encephalopathy
by Aslihan Kose Cetinkaya, Fatma Nur Sari, Avni Merter Keceli, Mustafa Senol Akin, Seyma Butun Turk, Omer Ertekin and Evrim Alyamac Dizdar
Children 2025, 12(8), 1012; https://doi.org/10.3390/children12081012 - 31 Jul 2025
Viewed by 105
Abstract
Background: Hypoxic–ischemic encephalopathy (HIE) is a leading cause of severe neurological impairments in childhood. Therapeutic hypothermia (TH) is both safe and effective in neonates born at ≥36 weeks gestation with moderate to severe HIE. We aimed to evaluate short-term outcomes—including brain injury detected [...] Read more.
Background: Hypoxic–ischemic encephalopathy (HIE) is a leading cause of severe neurological impairments in childhood. Therapeutic hypothermia (TH) is both safe and effective in neonates born at ≥36 weeks gestation with moderate to severe HIE. We aimed to evaluate short-term outcomes—including brain injury detected on magnetic resonance imaging (MRI)—in infants born at 34–35 weeks of gestation drawing on our clinical experience with neonates under 36 weeks of gestational age (GA). Methods: In this retrospective cohort study, 20 preterm infants with a GA of 34 to 35 weeks and a matched cohort of 80 infants with a GA of ≥36 weeks who were diagnosed with moderate to severe HIE and underwent TH were included. Infants were matched in a 1:4 ratio based on the worst base deficit in blood gas and sex. Maternal and neonatal characteristics, brain MRI findings and short term outcomes were compared. Results: Infants with a GA of 34–35 weeks had a lower birth weight and a higher rate of caesarean delivery (both p < 0.001). Apgar scores, sex, intubation rate in delivery room, blood gas pH, base deficit and lactate were comparable between the groups. Compared to infants born at ≥36 weeks of GA, preterm neonates were more likely to receive inotropes, had a longer time to achieve full enteral feeding, and experienced a longer hospital stay. The mortality rate was 10% in the 34–35 weeks GA group. Neuroimaging revealed injury in 66.7% of infants born at 34–35 weeks of gestation and in 58.8% of those born at ≥36 weeks (p = 0.56). Injury was observed across multiple brain regions, with white matter being the most frequently affected in the 34–35 weeks GA group. Thalamic and cerebellar abnormal signal intensity or diffusion restriction, punctate white matter lesions, and diffusion restriction in the corpus callosum and optic radiations were more frequently detected in infants born at 34–35 weeks of gestation. Conclusions: Our study contributes to the growing body of literature suggesting that TH may be feasible and tolerated in late preterm infants. Larger randomized controlled trials focused on this vulnerable population are necessary to establish clear guidelines regarding the safety and efficacy of TH in late preterm infants. Full article
(This article belongs to the Section Pediatric Neonatology)
16 pages, 1803 KiB  
Article
Degradation of Poliovirus Sabin 2 Genome After Electron Beam Irradiation
by Dmitry D. Zhdanov, Anastasia N. Shishparenok, Yury Y. Ivin, Anastasia A. Kovpak, Anastasia N. Piniaeva, Igor V. Levin, Sergei V. Budnik, Oleg A. Shilov, Roman S. Churyukin, Lubov E. Agafonova, Alina V. Berezhnova, Victoria V. Shumyantseva and Aydar A. Ishmukhametov
Vaccines 2025, 13(8), 824; https://doi.org/10.3390/vaccines13080824 (registering DOI) - 31 Jul 2025
Viewed by 151
Abstract
Objectives: Most antiviral vaccines are created by inactivating the virus using chemical methods. The inactivation and production of viral vaccine preparations after the irradiation of viruses with accelerated electrons has a number of significant advantages. Determining the integrity of the genome of the [...] Read more.
Objectives: Most antiviral vaccines are created by inactivating the virus using chemical methods. The inactivation and production of viral vaccine preparations after the irradiation of viruses with accelerated electrons has a number of significant advantages. Determining the integrity of the genome of the resulting viral particles is necessary to assess the quality and degree of inactivation after irradiation. Methods: This work was performed on the Sabin 2 model polio virus. To determine the most sensitive and most radiation-resistant part, the polio virus genome was divided into 20 segments. After irradiation at temperatures of 25 °C, 2–8 °C, −20 °C, or −70 °C, the amplification intensity of these segments was measured in real time. Results: The best correlation between the amplification cycle and the irradiation dose at all temperatures was observed for segment 3D, left. Consequently, this section of the poliovirus genome is the least resistant to the action of accelerated electrons and is the most representative for determining genome integrity. The worst dependence was observed for the VP1 right section, which, therefore, cannot be used to determine genome integrity during inactivation. The electrochemical approach was also employed for a comparative assessment of viral RNA integrity before and after irradiation. An increase in the irradiation dose was accompanied by an increase in signals indicating the electrooxidation of RNA heterocyclic bases. The increase in peak current intensity of viral RNA electrochemical signals confirmed the breaking of viral RNA strands during irradiation. The shorter the RNA fragments, the greater the peak current intensities. In turn, this made the heterocyclic bases more accessible to electrooxidation on the electrode. Conclusions: These results are necessary for characterizing the integrity of the viral genome for the purpose of creating of antiviral vaccines. Full article
(This article belongs to the Special Issue Recent Scientific Development of Poliovirus Vaccines)
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21 pages, 1681 KiB  
Article
Cross-Modal Complementarity Learning for Fish Feeding Intensity Recognition via Audio–Visual Fusion
by Jian Li, Yanan Wei, Wenkai Ma and Tan Wang
Animals 2025, 15(15), 2245; https://doi.org/10.3390/ani15152245 - 31 Jul 2025
Viewed by 164
Abstract
Accurate evaluation of fish feeding intensity is crucial for optimizing aquaculture efficiency and the healthy growth of fish. Previous methods mainly rely on single-modal approaches (e.g., audio or visual). However, the complex underwater environment makes single-modal monitoring methods face significant challenges: visual systems [...] Read more.
Accurate evaluation of fish feeding intensity is crucial for optimizing aquaculture efficiency and the healthy growth of fish. Previous methods mainly rely on single-modal approaches (e.g., audio or visual). However, the complex underwater environment makes single-modal monitoring methods face significant challenges: visual systems are severely affected by water turbidity, lighting conditions, and fish occlusion, while acoustic systems suffer from background noise. Although existing studies have attempted to combine acoustic and visual information, most adopt simple feature-level fusion strategies, which fail to fully explore the complementary advantages of the two modalities under different environmental conditions and lack dynamic evaluation mechanisms for modal reliability. To address these problems, we propose the Adaptive Cross-modal Attention Fusion Network (ACAF-Net), a cross-modal complementarity learning framework with a two-stage attention fusion mechanism: (1) a cross-modal enhancement stage that enriches individual representations through Low-rank Bilinear Pooling and learnable fusion weights; (2) an adaptive attention fusion stage that dynamically weights acoustic and visual features based on complementarity and environmental reliability. Our framework incorporates dimension alignment strategies and attention mechanisms to capture temporal–spatial complementarity between acoustic feeding signals and visual behavioral patterns. Extensive experiments demonstrate superior performance compared to single-modal and conventional fusion approaches, with 6.4% accuracy improvement. The results validate the effectiveness of exploiting cross-modal complementarity for underwater behavioral analysis and establish a foundation for intelligent aquaculture monitoring systems. Full article
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18 pages, 4411 KiB  
Article
Research on Enhancing Target Recognition Rate Based on Orbital Angular Momentum Spectrum with Assistance of Neural Network
by Guanxu Chen, Hongyang Wang, Hao Yun, Zhanpeng Shi, Zijing Zhang, Chengshuai Cui, Di Wu, Xinran Lyu and Yuan Zhao
Photonics 2025, 12(8), 771; https://doi.org/10.3390/photonics12080771 - 30 Jul 2025
Viewed by 175
Abstract
In this paper, the single-mode vortex beam is used to illuminate targets of different shapes, and the targets are recognized using machine learning algorithms based on the orbital angular momentum (OAM) spectral information of the echo signal. We innovatively utilize three neural networks—multilayer [...] Read more.
In this paper, the single-mode vortex beam is used to illuminate targets of different shapes, and the targets are recognized using machine learning algorithms based on the orbital angular momentum (OAM) spectral information of the echo signal. We innovatively utilize three neural networks—multilayer perceptron (MLP), convolutional neural network (CNN) and residual neural network (ResNet)—to train extensive echo OAM spectrum data. The trained models can rapidly and accurately classify the OAM spectrum data of different targets’ echo signals. The results show that the residual network (ResNet) performs best under all turbulence intensities and can achieve a high recognition rate when Cn2=1×1013 m2/3. In addition, even when the target size is η=0.3, the recognition rate of ResNet can reach 97%, while the robustness of MLP and CNN to the target size is lower; the recognition rates are 91.75% and 91%, respectively. However, although the recognition performance of CNN and MLP is slightly lower than that of ResNet, their training time is much lower than that of ResNet, which can achieve a good balance between recognition performance and training time cost. This research has a promising future in the fields of target recognition and intelligent navigation based on multi-dimensional information. Full article
(This article belongs to the Special Issue Advancements in Optics and Laser Measurement)
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28 pages, 6962 KiB  
Article
Mapping Drought Incidents in the Mediterranean Region with Remote Sensing: A Step Toward Climate Adaptation
by Aikaterini Stamou, Aikaterini Bakousi, Anna Dosiou, Zoi-Eirini Tsifodimou, Eleni Karachaliou, Ioannis Tavantzis and Efstratios Stylianidis
Land 2025, 14(8), 1564; https://doi.org/10.3390/land14081564 - 30 Jul 2025
Viewed by 146
Abstract
The Mediterranean region, identified by scientists as a ‘climate hot spot’, is experiencing warmer and drier conditions, along with an increase in the intensity and frequency of extreme weather events. One such extreme phenomena is droughts. The recent wildfires in this region are [...] Read more.
The Mediterranean region, identified by scientists as a ‘climate hot spot’, is experiencing warmer and drier conditions, along with an increase in the intensity and frequency of extreme weather events. One such extreme phenomena is droughts. The recent wildfires in this region are a concerning consequence of this phenomenon, causing severe environmental damage and transforming natural landscapes. However, droughts involve a two-way interaction: On the one hand, climate change and various human activities, such as urbanization and deforestation, influence the development and severity of droughts. On the other hand, droughts have a significant impact on various sectors, including ecology, agriculture, and the local economy. This study investigates drought dynamics in four Mediterranean countries, Greece, France, Italy, and Spain, each of which has experienced severe wildfire events in recent years. Using satellite-based Earth observation data, we monitored drought conditions across these regions over a five-year period that includes the dates of major wildfires. To support this analysis, we derived and assessed key indices: the Normalized Difference Vegetation Index (NDVI), Normalized Difference Water Index (NDWI), and Normalized Difference Drought Index (NDDI). High-resolution satellite imagery processed within the Google Earth Engine (GEE) platform enabled the spatial and temporal analysis of these indicators. Our findings reveal that, in all four study areas, peak drought conditions, as reflected in elevated NDDI values, were observed in the months leading up to wildfire outbreaks. This pattern underscores the potential of satellite-derived indices for identifying regional drought patterns and providing early signals of heightened fire risk. The application of GEE offered significant advantages, as it allows efficient handling of long-term and large-scale datasets and facilitates comprehensive spatial analysis. Our methodological framework contributes to a deeper understanding of regional drought variability and its links to extreme events; thus, it could be a valuable tool for supporting the development of adaptive management strategies. Ultimately, such approaches are vital for enhancing resilience, guiding water resource planning, and implementing early warning systems in fire-prone Mediterranean landscapes. Full article
(This article belongs to the Special Issue Land and Drought: An Environmental Assessment Through Remote Sensing)
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26 pages, 3356 KiB  
Article
Integrating Urban Factors as Predictors of Last-Mile Demand Patterns: A Spatial Analysis in Thessaloniki
by Dimos Touloumidis, Michael Madas, Panagiotis Kanellopoulos and Georgia Ayfantopoulou
Urban Sci. 2025, 9(8), 293; https://doi.org/10.3390/urbansci9080293 - 29 Jul 2025
Viewed by 186
Abstract
While the explosive growth in e-commerce stresses urban logistics systems, city planners lack of fine-grained data in order to anticipate and manage the resulting freight flows. Using a three-stage analytical approach combining descriptive zonal statistics, hotspot analysis and different regression modeling from univariate [...] Read more.
While the explosive growth in e-commerce stresses urban logistics systems, city planners lack of fine-grained data in order to anticipate and manage the resulting freight flows. Using a three-stage analytical approach combining descriptive zonal statistics, hotspot analysis and different regression modeling from univariate to geographically weighted regression, this study integrates one year of parcel deliveries from a leading courier with open spatial layers of land-use zoning, census population, mobile-signal activity and household income to model last-mile demand across different land use types. A baseline linear regression shows that residential population alone accounts for roughly 30% of the variance in annual parcel volumes (2.5–3.0 deliveries per resident) while adding daytime workforce and income increases the prediction accuracy to 39%. In a similar approach where coefficients vary geographically with Geographically Weighted Regression to capture the local heterogeneity achieves a significant raise of the overall R2 to 0.54 and surpassing 0.70 in residential and institutional districts. Hot-spot analysis reveals a highly fragmented pattern where fewer than 5% of blocks generate more than 8.5% of all deliveries with no apparent correlation to the broaden land-use classes. Commercial and administrative areas exhibit the greatest intensity (1149 deliveries per ha) yet remain the hardest to explain (global R2 = 0.21) underscoring the importance of additional variables such as retail mix, street-network design and tourism flows. Through this approach, the calibrated models can be used to predict city-wide last-mile demand using only public inputs and offers a transferable, privacy-preserving template for evidence-based freight planning. By pinpointing the location and the land uses where demand concentrates, it supports targeted interventions such as micro-depots, locker allocation and dynamic curb-space management towards more sustainable and resilient urban-logistics networks. Full article
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20 pages, 2399 KiB  
Article
Exploring Novel Optical Soliton Molecule for the Time Fractional Cubic–Quintic Nonlinear Pulse Propagation Model
by Syed T. R. Rizvi, Atef F. Hashem, Azrar Ul Hassan, Sana Shabbir, A. S. Al-Moisheer and Aly R. Seadawy
Fractal Fract. 2025, 9(8), 497; https://doi.org/10.3390/fractalfract9080497 - 29 Jul 2025
Viewed by 236
Abstract
This study focuses on the analysis of soliton solutions within the framework of the time-fractional cubic–quintic nonlinear Schrödinger equation (TFCQ-NLSE), a powerful model with broad applications in complex physical phenomena such as fiber optic communications, nonlinear optics, optical signal processing, and laser–tissue interactions [...] Read more.
This study focuses on the analysis of soliton solutions within the framework of the time-fractional cubic–quintic nonlinear Schrödinger equation (TFCQ-NLSE), a powerful model with broad applications in complex physical phenomena such as fiber optic communications, nonlinear optics, optical signal processing, and laser–tissue interactions in medical science. The nonlinear effects exhibited by the model—such as self-focusing, self-phase modulation, and wave mixing—are influenced by the combined impact of the cubic and quintic nonlinear terms. To explore the dynamics of this model, we apply a robust analytical technique known as the sub-ODE method, which reveals a diverse range of soliton structures and offers deep insight into laser pulse interactions. The investigation yields a rich set of explicit soliton solutions, including hyperbolic, rational, singular, bright, Jacobian elliptic, Weierstrass elliptic, and periodic solutions. These waveforms have significant real-world relevance: bright solitons are employed in fiber optic communications for distortion-free long-distance data transmission, while both bright and dark solitons are used in nonlinear optics to study light behavior in media with intensity-dependent refractive indices. Solitons also contribute to advancements in quantum technologies, precision measurement, and fiber laser systems, where hyperbolic and periodic solitons facilitate stable, high-intensity pulse generation. Additionally, in nonlinear acoustics, solitons describe wave propagation in media where amplitude influences wave speed. Overall, this work highlights the theoretical depth and practical utility of soliton dynamics in fractional nonlinear systems. Full article
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24 pages, 6890 KiB  
Article
Multi-Level Transcriptomic and Physiological Responses of Aconitum kusnezoffii to Different Light Intensities Reveal a Moderate-Light Adaptation Strategy
by Kefan Cao, Yingtong Mu and Xiaoming Zhang
Genes 2025, 16(8), 898; https://doi.org/10.3390/genes16080898 - 28 Jul 2025
Viewed by 233
Abstract
Objectives: Light intensity is a critical environmental factor regulating plant growth, development, and stress adaptation. However, the physiological and molecular mechanisms underlying light responses in Aconitum kusnezoffii, a valuable alpine medicinal plant, remain poorly understood. This study aimed to elucidate the adaptive [...] Read more.
Objectives: Light intensity is a critical environmental factor regulating plant growth, development, and stress adaptation. However, the physiological and molecular mechanisms underlying light responses in Aconitum kusnezoffii, a valuable alpine medicinal plant, remain poorly understood. This study aimed to elucidate the adaptive strategies of A. kusnezoffii under different light intensities through integrated physiological and transcriptomic analyses. Methods: Two-year-old A. kusnezoffii plants were exposed to three controlled light regimes (790, 620, and 450 lx). Leaf anatomical traits were assessed via histological sectioning and microscopic imaging. Antioxidant enzyme activities (CAT, POD, and SOD), membrane lipid peroxidation (MDA content), osmoregulatory substances, and carbon metabolites were quantified using standard biochemical assays. Transcriptomic profiling was conducted using Illumina RNA-seq, with differentially expressed genes (DEGs) identified through DESeq2 and functionally annotated via GO and KEGG enrichment analyses. Results: Moderate light (620 lx) promoted optimal leaf structure by enhancing palisade tissue development and epidermal thickening, while reducing membrane lipid peroxidation. Antioxidant defense capacity was elevated through higher CAT, POD, and SOD activities, alongside increased accumulation of soluble proteins, sugars, and starch. Transcriptomic analysis revealed DEGs enriched in photosynthesis, monoterpenoid biosynthesis, hormone signaling, and glutathione metabolism pathways. Key positive regulators (PHY and HY5) were upregulated, whereas negative regulators (COP1 and PIFs) were suppressed, collectively facilitating chloroplast development and photomorphogenesis. Trend analysis indicated a “down–up” gene expression pattern, with early suppression of stress-responsive genes followed by activation of photosynthetic and metabolic processes. Conclusions: A. kusnezoffii employs a coordinated, multi-level adaptation strategy under moderate light (620 lx), integrating leaf structural optimization, enhanced antioxidant defense, and dynamic transcriptomic reprogramming to maintain energy balance, redox homeostasis, and photomorphogenic flexibility. These findings provide a theoretical foundation for optimizing artificial cultivation and light management of alpine medicinal plants. Full article
(This article belongs to the Section Plant Genetics and Genomics)
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14 pages, 1354 KiB  
Article
Layered Structures Based on Ga2O3/GaS0.98Se0.02 for Gas Sensor Applications
by Veaceslav Sprincean, Mihail Caraman, Tudor Braniste and Ion Tiginyanu
Surfaces 2025, 8(3), 53; https://doi.org/10.3390/surfaces8030053 - 28 Jul 2025
Viewed by 234
Abstract
Efficient detection of toxic and flammable vapors remains a major technological challenge, especially for environmental and industrial applications. This paper reports on the fabrication technology and gas-sensing properties of nanostructured Ga2O3/GaS0.98Se0.02. The β-Ga2O [...] Read more.
Efficient detection of toxic and flammable vapors remains a major technological challenge, especially for environmental and industrial applications. This paper reports on the fabrication technology and gas-sensing properties of nanostructured Ga2O3/GaS0.98Se0.02. The β-Ga2O3 nanowires/nanoribbons with inclusions of Ga2S3 and Ga2Se3 microcrystallites were obtained by thermal treatment of GaS0.98Se0.02 slabs in air enriched with water vapors. The microstructure, crystalline quality, and elemental composition of the obtained samples were investigated using electron microscopy, X-ray diffraction, and Raman spectroscopy. The obtained structures show promising results as active elements in gas sensor applications. Vapors of methanol (CH3OH), ethanol (C2H5OH), and acetone (CH3-CO-CH3) were successfully detected using the nanostructured samples. The electrical signal for gas detection was enhanced under UV light irradiation. The saturation time of the sensor depends on the intensity of the UV radiation beam. Full article
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14 pages, 1343 KiB  
Article
Role of Plasma-Derived Exosomal MicroRNAs in Mediating Type 2 Diabetes Remission
by Sujing Wang, Shuxiao Shi, Xuanwei Jiang, Guangrui Yang, Deshan Wu, Kexin Li, Victor W. Zhong and Xihao Du
Nutrients 2025, 17(15), 2450; https://doi.org/10.3390/nu17152450 - 27 Jul 2025
Viewed by 396
Abstract
Objective: This study aimed to identify plasma exosomal microRNAs (miRNAs) associated with weight loss and type 2 diabetes (T2D) remission following low-calorie diet (LCD) intervention. Methods: A 6-month dietary intervention targeting T2D remission was conducted among individuals with T2D. Participants underwent a 3-month [...] Read more.
Objective: This study aimed to identify plasma exosomal microRNAs (miRNAs) associated with weight loss and type 2 diabetes (T2D) remission following low-calorie diet (LCD) intervention. Methods: A 6-month dietary intervention targeting T2D remission was conducted among individuals with T2D. Participants underwent a 3-month intensive weight loss phase consuming LCD (815–835 kcal/day) and a 3-month weight maintenance phase (N = 32). Sixteen participants were randomly selected for characterization of plasma-derived exosomal miRNA profiles at baseline, 3 months, and 6 months using small RNA sequencing. Linear mixed-effects models were used to identify differentially expressed exosomal miRNAs between responders and non-responders. Pathway enrichment analyses were conducted using target mRNAs of differentially expressed miRNAs. Logistic regression models assessed the predictive value of differentially expressed miRNAs for T2D remission. Results: Among the 16 participants, 6 achieved weight loss ≥10% and 12 achieved T2D remission. Eighteen exosomal miRNAs, including miR-92b-3p, miR-495-3p, and miR-452b-5p, were significantly associated with T2D remission and weight loss. Pathway analyses revealed enrichment in PI3K-Akt pathway, FoxO signaling pathway, and insulin receptor binding. The addition of individual miRNAs including miR-15b-3p, miR-26a-5p, and miR-3913-5p to base model improved the area under the curve values by 0.02–0.08 at 3 months and by 0.02–0.06 at 6 months for T2D remission. Conclusions: This study identified exosomal miRNAs associated with T2D remission and weight loss following LCD intervention. Several exosomal miRNAs might serve as valuable predictors of T2D remission in response to LCD intervention. Full article
(This article belongs to the Special Issue Nutrition for Patients with Diabetes and Clinical Obesity)
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