Search Results (1,052)

Tibia morphology is a significant factor in poultry germplasm and market traits. Copy number variation (CNV) has been identified as a structural source of genetic variation for complex traits. We profiled genome-wide CNVs in Dong Tao chickens and nine other local breeds and performed a breed-based case–control CNV-GWAS (Dong Tao vs. reference breeds). We sequenced 152 chickens, including 46 Dong Tao, and annotated genes and pathways. A total of 22,972 CNVs were detected, of which 2193 were retained after filtration across 33 chromosomes, with sizes ranging from 2 kilobases to 12.8 megabases. Principal component analysis indicated an overall weakness in the breed structure and a sex-related trend within Dong Tao. A deletion on chromosome 3 at 36,529,501 to 36,539,000 was observed in Dong Tao. The exploratory screen identified 44 CNV regions at nominal significance (p < 0.05), distinguishing Dong Tao from other breeds. Thirty-seven regions contained 99 genes, including CHRM3 within the chromosome 3 deletion and CRADD overlapping two CNVs. Enrichment analysis indicated thiamine metabolism and growth hormone receptor signalling as the primary pathways of interest, with TPK1, SOCS2, and FHIT identified as potential candidates. These results provide a CNV landscape for Dong Tao and prioritize variant regions and pathways potentially relevant to its robust tibia morphology; however, no direct CNV–tibia phenotype regression was performed. Full article

T-cell immunoglobulin and mucin domain 3 (TIM-3), a well-known immune checkpoint molecule, is increasingly recognized for its regulatory functions beyond T cell exhaustion, particularly in macrophages. Recent advances have revealed the important role of this molecule in various pathological and physiological conditions. The demand for a comprehensive study of TIM-3 is increasing, particularly as a result of ongoing clinical trials targeting TIM-3 in oncology. This review is devoted to the role of TIM-3 in macrophage biology, focusing on associations between TIM-3 expression and macrophage polarization states and functional activity, as well as its involvement in the pathogenesis of different diseases and reproductive immunology. The review examines known effects and molecular mechanisms by which TIM-3 regulates macrophage functional phenotype and the contribution of TIM-3-expressing macrophages to cancer, pregnancy, inflammation, infectious and autoimmune diseases, and fibrosis. Findings highlight the controversial role of TIM-3 in the regulatory function of macrophages and suggest that TIM-3 functions differently depending on the context. The review also touches on gaps and unexplored parts of the topic. A summary of current data allows us to conclude that TIM-3 is an important modulator of macrophage functions and can be considered a potential therapeutic target in various pathological conditions. Full article

Crucial regulators of gamete metabolism and signaling, mitochondria synchronize energy generation with redox equilibrium and developmental proficiency. Once thought of as hazardous byproducts, reactive oxygen species (ROS) are now understood to be vital signaling molecules that provide a “redox window of competence” that is required for oocyte maturation, sperm capacitation, and early embryo development. This review presents the idea of mitochondrial metabolic checkpoints, which are phases that govern gamete quality and fertilization potential by interacting with cellular signaling, redox balance, and mitochondrial activity. Recent research shows that oocytes may sustain a nearly ROS-free metabolic state by blocking specific respiratory-chain components, highlighting the importance of mitochondrial remodeling in gamete competence. Evidence from in vitro and in vivo studies shows that ROS act as dynamic gatekeepers at critical points in oogenesis, spermatogenesis, fertilization, and early embryogenesis. However, assisted reproductive technologies (ARTs) may inadvertently disrupt this redox–metabolic equilibrium. Potential translational benefits can be obtained via targeted techniques that optimize mitochondrial function, such as modifying oxygen tension, employing mitochondria-directed antioxidants like MitoQ and SS-31, and supplementing with nutraceuticals like melatonin, CoQ10, and resveratrol. Understanding ROS-mediated checkpoints forms the basis for developing biomarkers of gamete competence and precision therapies to improve ART outcomes. By highlighting mitochondria as both metabolic sensors and redox regulators, this review links fundamental mitochondrial biology to clinical reproductive medicine. Full article

Genetic resources are becoming increasingly important in aquatic species, especially in sectors such as aquaculture and biomedical research. These advancements, however, lack standardized methodology to consistently improve efficient use of gametes for fertilization and to eliminate male variation during spawning. This study provides a conceptual basis for generalizable quality control in artificial spawning of aquatic species by using interdisciplinary, industrial-scale tools to calculate a fertilization unit (e.g., the amount of sperm required to reliably fertilize the eggs produced by a female). Blue catfish (Ictalurus furcatus), zebrafish (Danio rerio), and eastern oysters (Crassostrea virginica) were used as diverse representative species. Comparisons among aquatic species were reviewed, fertilization units were defined, and a sensitivity analysis was performed to assess how deviations from the fertilization unit could affect artificial spawning efficiency. Overall, reproductive strategy (e.g., gamete biology) and production setting significantly influenced the fertilization unit. Employing a fertilization unit decreased “wasted” sperm and reduced male variability during spawning. Furthermore, fertilization efficiency dropped significantly when sperm use strayed from the fertilization unit, declining with both underuse and overuse, especially in oysters and catfish. Standardizing gamete use in aquatic species is essential for economic planning and achieving commercial-scale production, especially when investing in selectively bred or cryopreserved sperm. Full article

Pseudouridine (Ψ), the most abundant RNA modification, plays essential roles in shaping RNA structure, stability, and translational output. Beyond cancer, Ψ is dynamically regulated across numerous physiological and pathological contexts—including immune activation, metabolic disorders, stress responses, and pregnancy-related conditions such as preeclampsia—where elevated Ψ levels reflect intensified RNA turnover and modification activity. These broad functional roles highlight pseudouridylation as a central regulator of cellular homeostasis. Emerging evidence demonstrates that Ψ dysregulation contributes directly to the development and progression of several women’s cancers, including breast, ovarian, endometrial, and cervical malignancies. Elevated Ψ levels in tissues, blood, and urine correlate with tumor burden, metastatic potential, and therapeutic responsiveness. Aberrant activity of Ψ synthases such as PUS1, PUS7, and the H/ACA ribonucleoprotein component dyskerin alters pseudouridylation patterns across multiple RNA substrates, including rRNA, tRNA, mRNA, snoRNAs, and ncRNAs. These widespread modifications reshape ribosome function, modify transcript stability and translational efficiency, reprogram RNA–protein interactions, and activate oncogenic signaling programs. Advances in high-resolution, site-specific Ψ mapping technologies have further revealed mechanistic links between pseudouridylation and malignant transformation, highlighting how modification of distinct RNA classes contributes to altered cellular identity and tumor progression. Collectively, Ψ and its modifying enzymes represent promising biomarkers and therapeutic targets across women’s cancers, while also serving as sensitive indicators of diverse non-cancer physiological and disease states. Full article

The Campos Rupestres, ancient and nutrient-poor mountaintop ecosystems in Brazil, harbor exceptional biodiversity and endemism but face severe threats from mining and urban expansion. Native grasses (Poaceae), represented by nearly 300 documented species—many of them poorly studied—are fundamental elements of these ecosystems. They provide critical ecological services, including soil stabilization, enhancing carbon storage and nutrient cycling, regulating water availability, and resilience to disturbances. This review synthesizes current knowledge on the diversity, functions, and propagation of Campos Rupestres grasses, with emphasis on their potential in ecological restoration. Despite their ecological importance, large-scale use of native grasses remains incipient, constrained by limited knowledge of reproductive biology, low seed viability, and scarce commercial seed availability. Advances in propagation include seedling and plug production, vegetative propagation, and rescue/reintroduction strategies, which have shown promising results in post-mining restoration. However, reliance on seed collection from natural populations risks depleting already limited genetic resources, highlighting the need for ex situ production systems. Expanding research on taxonomy, ecology, and cost-effective propagation methods, alongside supportive policy and market development, is crucial for integrating native grasses as cornerstone species in restoration programs. Bridging these gaps will enhance biodiversity conservation and restoration in one of the world’s most threatened megadiverse systems. Full article

Women of reproductive age, especially those with polycystic ovarian syndrome (PCOS), often use glucagon-like peptide-1 receptor agonists (GLP-1RAs) to improve their metabolic functions. A growing body of evidence suggests that GLP-1R signaling may directly affect ovarian physiology, influencing granulosa cell proliferation, survival pathways, and steroidogenic production, in addition to its systemic metabolic effects. Nonetheless, there is a limited comprehension of the molecular mechanisms that regulate these activities and their correlation with menstrual function, reproductive potential, and assisted reproduction. This comprehensive review focuses on ovarian biology, granulosa cell signaling networks, steroidogenesis, and translational fertility outcomes, integrating clinical, in vivo, and in vitro information to elucidate the effects of GLP-1 receptor agonists on reproductive health. We conducted a thorough search of PubMed, Scopus, and Web of Science for randomized trials, prospective studies, animal models, and cellular experiments evaluating the effects of GLP-1RA on reproductive or ovarian outcomes, in accordance with PRISMA criteria. The retrieved data included metabolic changes, androgen levels, monthly regularity, ovarian structure, granulosa cell growth and death, FOXO1 signaling, FSH-cAMP-BMP pathway activity, and fertility or IVF results. Clinical trials shown that GLP-1 receptor agonists improve menstrual regularity, decrease body weight and central adiposity, increase sex hormone-binding globulin levels, and lower free testosterone in overweight and obese women with PCOS. Liraglutide, when combined with metformin, significantly improved IVF pregnancy rates, whereas exenatide increased natural conception rates. Mechanistic studies demonstrate that GLP-1R activation affects FOXO1 phosphorylation, hence promoting granulosa cell proliferation and anti-apoptotic processes. Incretin signaling altered steroidogenesis by reducing the levels of StAR, P450scc, and 3β-HSD, so inhibiting FSH-induced progesterone synthesis, while simultaneously enhancing BMP-Smad signaling. Animal studies demonstrated both beneficial (enhanced follicular growth, anti-apoptotic effects) and detrimental results (oxidative stress, granulosa cell death, uterine inflammation), indicating a context- and dose-dependent response. GLP-1 receptor agonists influence female reproductive biology by altering overall physiological processes and specifically impacting the ovaries via FOXO1 regulation, steroidogenic enzyme expression, and BMP-mediated FSH signaling. Preliminary clinical data indicate improved reproductive function in PCOS, as seen by increased pregnancy rates in both natural and IVF cycles; nevertheless, animal studies reveal a potential risk of ovarian and endometrial damage. These results highlight the need for controlled human research to clarify reproductive safety, molecular pathways, and optimum therapy timing, particularly in non-PCOS patients and IVF settings. Full article

Artificial insemination (AI) is a key reproductive biotechnology for genetic improvement in sheep. However, its efficiency remains lower and more variable than in most other livestock species. This review critically synthesizes the historical foundations of sheep AI, including methodological principles established by the Soviet school, and evaluates how these concepts have been further developed and adapted to contemporary reproductive biology. Particular emphasis is placed on estrous synchronization protocols, semen processing and cryopreservation, and insemination techniques. We highlight how anatomical constraints of the ovine cervix, seasonal reproductive physiology, and species-specific characteristics of ram sperm collectively limit fertility outcomes, especially when frozen–thawed semen is used. Comparative analysis of cervical, transcervical, and laparoscopic insemination methods indicates that laparoscopic AI remains the most reliable approach, although recent advances in catheter design and semen handling have improved the feasibility of less invasive techniques. This review further discusses emerging approaches, including sperm sex-sorting, alternative recovery methods, and early-stage spermatogonial stem cell–based technologies, emphasizing both their potential applications and current limitations. Overall, the available evidence suggests that future progress in sheep AI will depend on the integrated optimization of hormonal synchronization, semen preservation, and insemination strategies, rather than on isolated technical innovations. Full article

Despite its global distribution, the impacts of wild pigs on the environment are poorly understood. However, wild boar (Sus scrofa) is recognized as a pest species, causes extensive damage to agriculture, biodiversity, and forests, and contributes to motor vehicle accidents. This study investigates the causes and mechanisms underlying the demographic explosion of wild boar in Italy. The analysis is based exclusively on official datasets from Italian governmental institutes, allowing quantitative correlations between population dynamics, culling rates, and economic impacts. By integrating historical data, population biology, reproductive physiology, and chemical communication, the study reveals that anthropogenic pressures, counterintuitively driven by wildlife management practices, have significantly contributed to population growth. A shift from a K-strategy to an r-strategy in reproductive behavior, induced by sustained control pressure, has led to increased birth rates and accelerated expansion. Disruptions in species homeostasis trigger harmful changes in ecosystem structure and functionality, delineating a model of environmental damage. These findings highlight the urgency of adopting an integrated wildlife management approach that combines conservation biology and physiological principles with targeted operational interventions to prevent further degradation affecting both the species and the ecosystem. Full article

Background/Objectives: Male infertility contributes to nearly half of global infertility cases, yet conventional semen analysis is insufficient to predict assisted reproductive technology (ART) outcomes such as intracytoplasmic sperm injection (ICSI). Sperm DNA fragmentation (SDF) is a promising biomarker of genomic integrity, but clinical implementation remains hindered by methodological heterogeneity. This study compared two SDF assays—TUNEL and Acridine Orange (AO)—regarding their correlations with semen parameters and ICSI outcomes. Methods: Sixty men undergoing ICSI were prospectively enrolled. SDF was analyzed using two flow cytometric assays: TUNEL (detecting DNA strand breaks) and AO (assessing chromatin instability). Semen quality and ICSI outcomes (fertilization, cleavage, blastulation, and embryo utilization rates) were evaluated. Statistical analyses included Spearman’s rank correlation and Mann–Whitney tests. Results: Median SDF levels were significantly higher by TUNEL than AO (17.2% vs. 10.15%; p = 0.0065). Inter-assay correlation was weak (r = 0.299, p = 0.01). AO-derived SDF correlated positively with age (r = 0.311, p = 0.02), while TUNEL showed no such trend. Neither assay correlated significantly with semen parameters or ICSI outcomes, although AO tended to associate with lower motility and slightly reduced top-quality embryo rates. Conclusions: TUNEL and AO capture distinct facets of sperm DNA damage. Their limited correlation and lack of predictive value for ICSI outcomes highlight the need for assay-specific interpretation and standardization. Integration of SDF with additional biomarkers and oocyte factors may enhance its clinical utility. Full article

Plant functional traits are key to understanding species performance, community assembly and ecosystem processes. Fruit and seed traits play an important role in early life-cycle processes by influencing seed dispersal, germination, and establishment, ultimately shaping plant regeneration and ecosystem dynamics. While global initiatives such as TRY and Seed Information Database (SID) have assembled extensive trait data, coverage of reproductive traits remains limited, and high-quality images of diaspores are particularly scarce, particularly in subtropical Asia. To address this need, we created an open-source, comprehensive database of fruit and seed traits, accompanied by diaspore images against a high-contrast background. This dataset documents 684 species in 128 families recorded in Hong Kong and provides standardised measurements of morphological attributes (e.g., length, mass, number of seeds per fruit) and dispersal characteristics (e.g., presence of appendages). Our measurements were validated against previously published records of common species in Hong Kong, showing strong consistency with R² = 0.80 (p < 0.001) for fruit dry mass and R² = 0.91 (p < 0.001) for seed dry mass, respectively. This database provides a valuable resource for trait-based ecology, forest dynamics and conservation biology. Additionally, it supports applications in ecological restoration, habitat management, and predicting plant responses to environmental change. This initiative enhances our understanding of trait-based ecology by complementing global initiatives such as TRY and SID and improving the representation of reproductive traits from subtropical Asia, a region that is underrepresented in existing global databases. Full article

Invasive alien plants (IAPs) disrupt biodiversity, ecosystem functions, rural livelihoods, and human health/well-being. Hence, the negative impact of Cenchrus setaceus (syn. Pennisetum setaceum) as an invasive weed poses many concerns in terms of environmental and socio-economic impact. The abundance in previous research on invasion ecology, weed biology, and the management of C. setaceus establishes the chance to carry out an in-depth evaluation of this invasive alien species for a cohesive understanding, closely linked to policy development. This systematic review aims to provide a comprehensive evaluation of previous research, identify knowledge gaps, and incorporate recent practical research findings on C. setaceus to elucidate management options. Standard methods were used to collect the literary evidence on multiple thematic aspects linked with its traits and management. Results revealed the substantial negative impacts of C. setaceus on ecosystems, ascribed to multiple physiological, biochemical, and ecological features. Further, a multitude of plant traits such as rapid seed distribution and efficient reproductive strategies imposed serious challenges in the control of C. setaceus. Deployment of integrated control methods for at least three years in depleting seed bank conjunction by planting native grass may help in its confinement. In conclusion, policy measures like strict biosecurity/legal regulations, explicit elucidation of weed biology, early detection and response, ecological modeling, and long-term monitoring with community participation can expand the horizon of C. setaceus control and help achieve its sustainable management. Full article

The speckled smooth-hound Mustelus mento is an endemic coastal shark from the southeastern Pacific, currently listed as “Critically Endangered” due to intense fishing pressure and the absence of species-specific management across its distribution range. Between November 2021 and October 2023, 925 individuals were examined from artisanal landings in northern Chile to describe their reproductive biology and embryonic development characteristics. The total length ranged from 27.6–159.3 cm in females and 14.2–165.0 cm in males, with a sex ratio of 1:1.2, which was slightly biased towards females. The estimated size at 50% maturity was 53.6 cm for females and 48.7 cm for males, with 70.6% of females and 66.0% of males caught below these thresholds, indicating a predominance of immature individuals in landings. Nine gravid females (106–139 cm) contained 71 embryos, which were classified into five developmental stages (encapsulated ovum, early organogenesis, fin differentiation, pigmentation and growth, and pre-partum) based on their external morphology and yolk sac reduction. The litter size ranged from 4 to 12 embryos, and the estimated size at birth was 13–14 cm in length. Embryos were recorded only during the summer months, suggesting a seasonal reproductive cycle with parturition in the early autumn. The persistent yolk sac connection throughout development and the absence of placental structures confirm that M. mento exhibits aplacental viviparity. These results document the first population-level description of the reproductive biology of M. mento, redefine its reproductive mode, and provide baseline information essential for implementing species-specific management and conservation measures in Chilean waters. Full article

My article criticizes the view held by many ecologists that species have evolved essentially equivalent levels of fitness, thus permitting their coexistence. I show that a recently proposed version of this view called the “equal fitness paradigm” (EFP) has multiple problems, empirically and conceptually. Some of these problems are (1) an energetic fitness measure (OPG = lifetime production of surviving offspring per parental body mass) that ignores the critical effect of the timing of reproduction; (2) flawed methods and data used to calculate and interpret the body-size scaling invariance of OPG upon which the EFP is based; (3) omission of the profound effects of population size and geographical range size on species-level fitness; and (4) lack of recognition that if the EFP were true, species-level selection would not be able to operate. By contrast, the “variable fitness paradigm” (VFP), which is a mainstay of modern evolutionary biology, is supported by numerous lines of evidence at multiple levels of biological organization. Extensive fitness variation allows natural selection to operate at all these levels. Distinguishing fitness and adaptiveness as reproductive power and efficiency of resource acquisition, respectively, helps explain species coexistence within the conceptual framework of the VFP. No EFP is needed. Full article

The Austro-American Side-necked Turtles originated in Gondwana and are found only in South America and Australasia. This paper aimed to review the reproductive aspects of the Chelidae family systematically. The searches were conducted in several databases, resulting in 86 studies, of which only 21 were considered adequate. The research was mainly conducted in Australia and Brazil, in both natural and laboratory settings, across different ontogenetic stages among the sixteen species studied. The analyzed publications focused on different aspects of the reproductive biology of the Chelidae family, including ecology, anatomy, morphology, behavior, and other perspectives. Thus, this study aimed to answer questions related to reproduction and the factors that can affect the preparation, mating, sexual activity, and oviposition phases, highlighting the most researched areas and those that still require attention for the conservation of these species. Full article