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Keywords = reactive force field molecular dynamics

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16 pages, 2400 KB  
Article
Molecular Dynamics Study on the Mechanism of Coal High-Temperature Pyrolysis Based on Machine Learning Potential
by Menghao Ren, Rongheng Gou, Hanyu Chen, Tian-Min Wu, Shansong Gao, Dao Li, Haisheng Li, Qing Zheng and Yanjun Zhang
Chemistry 2026, 8(6), 75; https://doi.org/10.3390/chemistry8060075 - 1 Jun 2026
Viewed by 199
Abstract
Understanding the atomic-scale mechanisms of coal pyrolysis is essential for efficient coal utilization and carbon-neutral energy strategies, yet conventional computational approaches often struggle to balance between the high accuracy of quantum-chemical calculations and the efficiency of reactive force fields. To overcome this limitation, [...] Read more.
Understanding the atomic-scale mechanisms of coal pyrolysis is essential for efficient coal utilization and carbon-neutral energy strategies, yet conventional computational approaches often struggle to balance between the high accuracy of quantum-chemical calculations and the efficiency of reactive force fields. To overcome this limitation, we proposed a multiscale computational framework integrating high-throughput density functional theory (DFT) calculations, ReaxFF-based configuration sampling, YARP reaction enumeration, and DPA3-based machine learning potentials (MLPs). Two coal-specific MLPs, DPA3-coal and DPA3-coal@dftb, were constructed and systematically benchmarked on both small molecular systems and larger C20–30 coal fragments extracted from MD simulations. DPA3-coal@dftb model demonstrated significantly improved accuracy over ReaxFF in predicting energies and atomic forces while maintaining good transferability. To balance computational efficiency and accuracy in large-scale simulations, the DPA3-coal model was employed to perform accelerated reactive molecular dynamics simulations of a Solomon-type bituminous coal molecule from 1600 to 2600 K. The simulations revealed temperature-dependent evolution of coke, tar, and gas products, including secondary condensation and deep-cracking processes at elevated temperatures. Higher-level DFT calculations further confirmed the thermodynamic consistency of key reaction pathways involving radical formation, H-transfer, recombination, and CO generation, indicating that coal-specific MLPs provide an effective atomistic tool for investigating mechanistic trends in coal pyrolysis. Full article
(This article belongs to the Special Issue AI and Big Data in Chemistry)
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21 pages, 4608 KB  
Article
Atomic-Scale Understanding of Doping Effects in BaTiO3 in the Presence of Water: Implications for Photocatalytic Water Splitting
by Zhadyra Ye. Zakiyeva, Ulzhan Zh. Tolegen, Talgat M. Inerbaev, Eugene Kotomin, Aisulu U. Abuova, Beksultan Akilbekov, Ayaulym Amankeldiyeva, Arailym Zhomartova, Anatoli I. Popov, Omirzak K. Abdirashev and Fatima U. Abuova
Materials 2026, 19(11), 2336; https://doi.org/10.3390/ma19112336 - 1 Jun 2026
Viewed by 336
Abstract
The search for efficient photocatalysts for sustainable hydrogen production has driven growing interest in barium titanate (BaTiO3)-based materials, particularly through polymorph control, surface engineering, and nonmetal and transition-metal doping. In this work, we provide an atomic-scale understanding of structural modifications in [...] Read more.
The search for efficient photocatalysts for sustainable hydrogen production has driven growing interest in barium titanate (BaTiO3)-based materials, particularly through polymorph control, surface engineering, and nonmetal and transition-metal doping. In this work, we provide an atomic-scale understanding of structural modifications in nitrogen-, fluorine-, and rhodium-doped BaTiO3 using Density Functional Theory (DFT), as well as pristine and fluorine-substituted BaTiO3 using reactive force-field molecular dynamics (ReaxFF-MD) simulations. DFT results for pristine and doped tetragonal BaTiO3, as well as pristine hexagonal BaTiO3, reveal that nitrogen and rhodium substitutions enhance the covalent character of Ti-N and Rh-O bonds and promote the redistribution of electron density, as evidenced by noncovalent interaction (NCI) and critical point (QTAIM) analyses, whereas fluorine substitution leads to more ionic Ti-F bonding. ReaxFF-MD simulations of pristine and fluorine-substituted BaTiO3 in contact with water molecules demonstrate that fluorine substitution suppresses interfacial O-H bond formation and promotes ordered molecular hydration layers near titanium sites, as reflected in bond statistics and radial distribution functions. This study provides molecular insights into the role of N, F, and Rh doping in BaTiO3 using DFT, and the role of fluorine doping in BaTiO3 at the water–solid interface using ReaxFF-MD simulations, demonstrating that this integrated computational approach provides a solid basis for the rational design of next-generation materials for energy-related applications. Direct calculations of photocatalytic activity, charge transfer rates, and ferroelectric polarization effects were not performed in this work and remain important directions for future study. Full article
(This article belongs to the Section Catalytic Materials)
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29 pages, 11892 KB  
Review
Atomic-Scale Molecular Dynamics Modeling of Iron Oxides: Surface Properties and Methodologies
by Nikoleta Ivanova and Hassan Chamati
Molecules 2026, 31(10), 1629; https://doi.org/10.3390/molecules31101629 - 12 May 2026
Viewed by 330
Abstract
Iron oxides, including hematite (α-Fe2O3), magnetite (Fe3O4), and maghemite (γ-Fe2O3), play central roles in catalysis, corrosion, environmental remediation, magnetic nanotechnology, and energy storage. Molecular [...] Read more.
Iron oxides, including hematite (α-Fe2O3), magnetite (Fe3O4), and maghemite (γ-Fe2O3), play central roles in catalysis, corrosion, environmental remediation, magnetic nanotechnology, and energy storage. Molecular dynamics simulations have become an essential tool for understanding their structural, magnetic, and interfacial behavior at the atomic scale. This review provides a comprehensive overview of MD methodologies applied to these materials, spanning classical force fields, reactive force fields, ab initio molecular dynamics, and emerging machine learning interatomic potentials. Particular emphasis is placed on facet-dependent surface chemistry, especially the contrast between compact (111) and open (110) planes, and on adsorption processes involving water, nitrogen-containing molecules, and representative organic compounds. The review highlights recent advances in force field development, redox modeling, and multiscale simulation strategies while critically identifying limitations related to charge transfer, mixed valence, vacancy ordering, and magnetic–chemical coupling. Finally, future perspectives are outlined toward quantitatively predictive, facet-resolved, and magnetically aware simulations of iron oxide interfaces. These developments are expected to tightly link atomistic insights with experimental observations and guide the rational design of iron oxide-based functional materials. Full article
(This article belongs to the Special Issue Theoretical and Computational Studies of Condensed-Matter Systems)
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16 pages, 16243 KB  
Article
The Governing Role of Si/Al Ratio in the Structural Evolution and Mechanical Properties of N-A-S-H Gel
by Min Hu, Jiayun Chen, Bo Xia and Jiejin Chen
Materials 2026, 19(2), 246; https://doi.org/10.3390/ma19020246 - 7 Jan 2026
Cited by 2 | Viewed by 896
Abstract
Alkali-activated cementitious materials are environmentally friendly alternatives to traditional cement. The structure of their core product, sodium aluminosilicate hydrate (N-A-S-H) gel, is regulated by the silicon-to-aluminum (Si/Al) ratio; however, the atomic-scale mechanism underlying this influence remains unclear. Integrating reactive force field molecular dynamics [...] Read more.
Alkali-activated cementitious materials are environmentally friendly alternatives to traditional cement. The structure of their core product, sodium aluminosilicate hydrate (N-A-S-H) gel, is regulated by the silicon-to-aluminum (Si/Al) ratio; however, the atomic-scale mechanism underlying this influence remains unclear. Integrating reactive force field molecular dynamics simulations and experiments, this study systematically reveals the regulation mechanism of the Si/Al ratio (1.0–2.0) on the microstructure and macroscopic properties of N-A-S-H gels. Starting from well-defined PS and PSS oligomers, the simulation results demonstrate that the Si/Al ratio governs the polymerization pathway, aluminum coordination environment (especially the content of pentacoordinate aluminum), and evolution of nanoporosity. When the Si/Al ratio is approximately 1.8, the system exhibits the highest silicate polymerization degree, lowest nanoporosity, and densest three-dimensional (3D) network structure; deviation from this ratio leads to structural degradation due to charge imbalance or excessive polymerization. These computational findings are validated by experiments on fly ash-based geopolymers: the material achieves the highest compressive strength at a Si/Al ratio of 1.8. The consistency between simulations and experiments collectively reveals a cross-scale action mechanism: the Si/Al ratio determines the macroscopic mechanical properties by regulating the nanoscale packing density and defect distribution of the gel. This study provides critical atomic-scale insights for the rational design of high-performance geopolymers. Full article
(This article belongs to the Topic Novel Cementitious Materials)
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25 pages, 2123 KB  
Review
Molecular Dynamics Simulation of Nano-Aluminum: A Review on Oxidation, Structure Regulation, and Energetic Applications
by Dihua Ouyang, Xin Chen, Qiantao Zhang, Chunpei Yu, He Cheng, Weiqiang Pang and Jieshan Qiu
Nanomaterials 2026, 16(1), 74; https://doi.org/10.3390/nano16010074 - 5 Jan 2026
Cited by 1 | Viewed by 1223
Abstract
Nano-aluminum (nAl), characterized by its high combustion enthalpy and enhanced reactivity, serves as a critical component in advanced energetic materials like solid propellants and micro-ignition devices. However, the atomic-scale mechanisms governing its core–shell structure evolution, oxidation dynamics, and interfacial interactions remain elusive to [...] Read more.
Nano-aluminum (nAl), characterized by its high combustion enthalpy and enhanced reactivity, serves as a critical component in advanced energetic materials like solid propellants and micro-ignition devices. However, the atomic-scale mechanisms governing its core–shell structure evolution, oxidation dynamics, and interfacial interactions remain elusive to experimental probes due to spatiotemporal limitations. Molecular dynamics (MD) simulations, particularly the synergistic use of a ReaxFF reactive force field (for large-scale systems) and ab initio MD (for electronic-level accuracy), have emerged as a powerful tool to overcome this barrier. This review systematically delineates the oxidation mechanisms and core–shell structure regulation of nAl, with a focus on the multi-scale simulation paradigm integrating DFT, AIMD, and ReaxFF MD that directly supports nAl research. It critically examines the pivotal role of MD simulations in guiding the surface modification of nAl, elucidating combustion mechanisms at the atomic level, and designing interfaces in energetic composite systems. By synthesizing recent advances (2022–2025), this study establishes a clear structure–property relationship between microscopic features and macroscopic performance of nAl. Furthermore, it identifies prevailing challenges, including simulations under multi-physics loading, multi-scale bridging, and quantitative experiment-simulation validation that specifically affect nAl-based energetic systems. Finally, future research directions are prospected, encompassing the development of machine learning-empowered force fields tailored for nAl systems, multi-scale and multi-field coupling simulation frameworks targeting nAl applications, and closed-loop experiment-simulation systems for nAl-based energetic materials. This review aims to provide fundamental insights and a technical framework for the rational design and engineering application of nAl-based energetic materials in fields such as aerospace propulsion. Full article
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15 pages, 7052 KB  
Article
Molecular Dynamics Simulation of Texture Contact Friction Between Crystalline Silicon Layers for Application in Micro-Nano System Devices
by Jinping Zhang, Minghui Tan, Shan Yuan, Fei Wang, Yu Jia and Xiaolei Wang
Molecules 2026, 31(1), 91; https://doi.org/10.3390/molecules31010091 - 25 Dec 2025
Viewed by 1973
Abstract
Silicon is commonly used in micro/nano-electromechanical system (MEMS/NEMS) devices. Because detailed information about the friction interface in these systems is lacking, the relationship between texture shape and friction remains unclear. In this study, molecular dynamics simulations were performed to investigate the dry-friction tribological [...] Read more.
Silicon is commonly used in micro/nano-electromechanical system (MEMS/NEMS) devices. Because detailed information about the friction interface in these systems is lacking, the relationship between texture shape and friction remains unclear. In this study, molecular dynamics simulations were performed to investigate the dry-friction tribological behavior of crystalline silicon, focusing on the effects of surface roughness, normal load, and sliding speed. The results show that between normal loads of 4 GPa and 8 GPa, the average frictional force exhibits significant nonlinear behavior under a sliding speed of 0.2 Å/ps. The approximate steady value of the friction coefficient is 0.39, which is in good agreement with the experimental result of 0.37. Under a normal load of 5 GPa, the friction force increases linearly from 110 nN at 0.05 Å/ps to 311 nN at 2 Å/ps. In addition, in systems with sinusoidal surface roughness, the amplitude has a greater effect on the frictional properties than the period. Among the four rough surfaces studied, A10T32 exhibits the lowest friction force and friction coefficient. This provides theoretical support for the further design of MEMS/NEMS devices with long operational lifetimes. Full article
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19 pages, 6173 KB  
Article
Strain-Engineered Thermal Transport at One- to Two-Dimensional Junctions in 3D Nanostructures
by Moath Al Hayek, Aayush Patel, Joshua Ellison and Jungkyu Park
C 2026, 12(1), 1; https://doi.org/10.3390/c12010001 - 19 Dec 2025
Viewed by 1660
Abstract
In the present study, molecular dynamics simulations with three interatomic potentials (Polymer Consistent Force Field, Adaptive Intermolecular Reactive Empirical Bond Order, and Tersoff) are employed to investigate strain-dependent interfacial thermal resistance across one-dimensional to two-dimensional junctions. Carbon nanotube–graphene junctions exhibit exceptionally low interfacial [...] Read more.
In the present study, molecular dynamics simulations with three interatomic potentials (Polymer Consistent Force Field, Adaptive Intermolecular Reactive Empirical Bond Order, and Tersoff) are employed to investigate strain-dependent interfacial thermal resistance across one-dimensional to two-dimensional junctions. Carbon nanotube–graphene junctions exhibit exceptionally low interfacial resistances (1.69–2.37 × 10−10 K·m2/W at 300 K)—two to three orders of magnitude lower than conventional metal–dielectric interfaces. Strain-dependent behavior is highly potential-dependent, with different potentials showing inverse, positive, or minimal strain sensitivity. Local phonon density of states analysis with Tersoff reveals that strain-induced spectral redistribution in graphene toward lower frequencies enhances phonon coupling with carbon nanotube modes. Temperature significantly affects resistance, with 37–59% increases at 10 K compared to 300 K due to long-wavelength phonon scattering. Boron nitride nanotube–hexagonal boron nitride nanosheet junctions exhibit 60% higher resistance (3.2 × 10−10 K·m2/W) with temperature-dependent strain behavior and spacing-insensitive performance. Interfacial resistance is independent of pillar height, confirming junction-dominated transport. The discovery of exceptionally low interfacial resistances and material-specific strain responses enables the engineering of thermally switchable devices and mechanically robust thermal pathways. These findings directly address critical challenges in next-generation flexible electronics where devices must simultaneously manage high heat fluxes while maintaining thermal performance under repeated mechanical deformation. Full article
(This article belongs to the Special Issue 10th Anniversary of C — Journal of Carbon Research)
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40 pages, 3752 KB  
Review
Evaluating Fuel Properties of SAF Blends: From Component-Based Estimation to Molecular Dynamics
by Fozia Batool, Vladislav Vasilyev, James Wang and Feng Wang
Energies 2025, 18(24), 6401; https://doi.org/10.3390/en18246401 - 8 Dec 2025
Cited by 1 | Viewed by 1811
Abstract
The transition to sustainable aviation fuel (SAF) is critical for reducing the carbon footprint of the aviation sector while ensuring compatibility with current engines and infrastructure. Regulatory constraints, such as ASTM D7566, currently limit SAF blending to 50% in commercial flights, emphasizing the [...] Read more.
The transition to sustainable aviation fuel (SAF) is critical for reducing the carbon footprint of the aviation sector while ensuring compatibility with current engines and infrastructure. Regulatory constraints, such as ASTM D7566, currently limit SAF blending to 50% in commercial flights, emphasizing the need for accurate evaluation of SAF properties to enable broader adoption. This review presents an updated overview of fuel studies evaluating key thermophysical and transport properties of hydrocarbon-based SAFs—including density, viscosity, specific energy, flash point, and thermal stability—with particular emphasis on molecular dynamics (MD) simulations. Among the MD simulations, the OPLS-AA force field demonstrates high accuracy in modeling liquid-phase hydrocarbons and shows strong agreement with experimental data. Coupled with MD engines like LAMMPS and GROMACS, it enables scalable and efficient simulations of SAF blends. Emerging research trends highlight integrative approaches that combine classical MD and machine learning (ML) in fuel property prediction, and force-field optimization to improve predictive capability. Future research in fuel is moving toward multi-force-field coupling using reactive frameworks such as ReaxFF for studying pyrolysis and oxidation, and data-driven experiments with in situ simulation feedback loops to accelerate SAF design and facilitate wider implementation in aviation. Full article
(This article belongs to the Section I1: Fuel)
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14 pages, 15664 KB  
Article
Defect Engineering in Laser-Induced Graphene (LIG) Through Temperature Control: A Reactive Molecular Dynamics Study
by Sergey V. Pavlov
Molecules 2025, 30(22), 4344; https://doi.org/10.3390/molecules30224344 - 10 Nov 2025
Cited by 1 | Viewed by 1546
Abstract
Scalable and low-cost graphene synthesis remains a critical challenge for applications in energy storage, sensing, and beyond. Laser-induced graphene (LIG), produced by the rapid local carbonization of polymers like polyimide using laser irradiation, offers a promising route for the one-step, scalable fabrication of [...] Read more.
Scalable and low-cost graphene synthesis remains a critical challenge for applications in energy storage, sensing, and beyond. Laser-induced graphene (LIG), produced by the rapid local carbonization of polymers like polyimide using laser irradiation, offers a promising route for the one-step, scalable fabrication of porous graphene materials. This work employs reactive molecular dynamics simulations with the ReaxFF force field to investigate the temperature dependence of polyimide carbonization into LIG. We analyze the resulting structures with a focus on the formation of functional groups. Our simulations identify an optimal carbonization temperature window near 3000 K for maximizing graphene yield. Temperatures exceeding 3500 K cause a drastic reduction in six-membered carbon rings, indicative of structural degradation. Conversely, lower temperatures (2500–2750 K) decrease graphene yield but increase the concentration of carbonyl, pyrrolic, pyridinic, and nitrile functional groups. These oxygen- and nitrogen-containing groups are potentially valuable for tailoring functionalized graphene in electrochemical and sensing applications. Furthermore, the graphitization process was found to require extended simulation times (up to ∼5 ns) to reach equilibrium, underscoring the importance of timescale in modeling such processes. Full article
(This article belongs to the Section Physical Chemistry)
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15 pages, 4855 KB  
Article
Atomic-Scale Mechanisms of Catalytic Recombination and Ablation in Knitted Graphene Under Hyperthermal Atomic Oxygen Exposure
by Yating Pan, Yunpeng Zhu, Donghui Zhang and Ning Wei
C 2025, 11(3), 67; https://doi.org/10.3390/c11030067 - 2 Sep 2025
Cited by 1 | Viewed by 2038
Abstract
Effective ablative thermal protection systems are essential for ensuring the structural integrity of hypersonic vehicles subjected to extreme aerothermal loads. However, the microscopic reaction mechanisms at the gas–solid interface, particularly under non-equilibrium high-enthalpy conditions, remain poorly understood. This study employs reactive molecular dynamics [...] Read more.
Effective ablative thermal protection systems are essential for ensuring the structural integrity of hypersonic vehicles subjected to extreme aerothermal loads. However, the microscopic reaction mechanisms at the gas–solid interface, particularly under non-equilibrium high-enthalpy conditions, remain poorly understood. This study employs reactive molecular dynamics (RMD) simulations with the ReaxFF-C/H/O force field to investigate the atomic-scale ablation behavior of a graphene-based knitted graphene structure impacted by atomic oxygen (AO). By systematically varying the AO incident kinetic energy (from 0.1 to 8.0 eV) and incidence angle (from 15° to 90°), we reveal the competing interplay between catalytic recombination and ablation processes. The results show that the catalytic recombination coefficient of oxygen molecules reaches a maximum at 5.0 eV, where surface-mediated O2 formation is most favorable. At higher energies, the reaction pathway shifts toward enhanced CO and CO2 production due to increased carbon atom ejection and surface degradation. Furthermore, as the AO incidence angle increases, the recombination efficiency decreases linearly, while C-C bond breakage intensifies due to stronger vertical energy components. These findings offer new insights into the anisotropic surface response of knitted graphene structures under hyperthermal oxygen exposure and provide valuable guidance for the design and optimization of next-generation thermal protection materials for hypersonic flight. Full article
(This article belongs to the Special Issue 10th Anniversary of C — Journal of Carbon Research)
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20 pages, 5939 KB  
Article
Mechanistic Insights into the Hot-Spot Formation and Pyrolysis of LLM-105 with Different Void Defects: A ReaxFF Molecular Dynamics Study
by Mengyun Mei, Zijian Sun, Lixin Ye and Weihua Zhu
Molecules 2025, 30(14), 3016; https://doi.org/10.3390/molecules30143016 - 18 Jul 2025
Cited by 1 | Viewed by 1547
Abstract
To investigate the influences of void defects of different sizes, molecular dynamics combined with ReaxFF-lg reactive force field was used to study the hot-spot formation mechanism and thermal decomposition behavior of 2,6-diamino-3,5-dinitropyrazine-1-oxide (LLM-105) crystals with different void defects at 2500 K. The results [...] Read more.
To investigate the influences of void defects of different sizes, molecular dynamics combined with ReaxFF-lg reactive force field was used to study the hot-spot formation mechanism and thermal decomposition behavior of 2,6-diamino-3,5-dinitropyrazine-1-oxide (LLM-105) crystals with different void defects at 2500 K. The results indicate that larger void defects are more conducive to the formation of hot-spots. The consistency of the trends in time evolution of the potential energy, species numbers, and small molecules amounts between the ideal and void-containing LLM-105 crystals demonstrates that the presence of the void defect does not alter the decomposition mechanism of the LLM-105 molecule. An increase in the size of the void defect significantly increases the degree of diffusion of the C, H, O, and N atoms in the crystals, which affects the effective collisions between the atoms and thus alters the occurrence frequency of relevant reactions and the production of relevant products. Full article
(This article belongs to the Section Physical Chemistry)
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19 pages, 6947 KB  
Article
Simulation of the Pyrolysis Process of Cyclohexane-Containing Semi-Aromatic Polyamide Based on ReaxFF-MD
by Xiaotong Zhang, Yuanbo Zheng, Qian Zhang, Kai Wu, Qinwei Yu and Jianming Yang
Polymers 2025, 17(12), 1593; https://doi.org/10.3390/polym17121593 - 6 Jun 2025
Cited by 3 | Viewed by 2121
Abstract
Cyclohexane-containing semi-aromatic polyamides (c-SaPA) exhibit excellent comprehensive properties. Existing studies predominantly focus on synthesis and modification, while fundamental investigations into pyrolysis mechanisms remain limited, which restricts the development of advanced materials for high-performance applications such as automotive and energy systems. This study employs [...] Read more.
Cyclohexane-containing semi-aromatic polyamides (c-SaPA) exhibit excellent comprehensive properties. Existing studies predominantly focus on synthesis and modification, while fundamental investigations into pyrolysis mechanisms remain limited, which restricts the development of advanced materials for high-performance applications such as automotive and energy systems. This study employs Reactive Force Field Molecular Dynamics (ReaxFF-MD) simulations to establish a pyrolysis model for poly(terephthaloyl-hexahydro-m-xylylenediamine) (PHXDT), systematically probing its pyrolysis kinetics and evolutionary pathways under elevated temperatures. The simulation results reveal an activation energy of 107.55 kJ/mol and a pre-exponential factor of 9.64 × 1013 s−1 for the pyrolysis process. The primary decomposition pathway involves three distinct stages. The first is initial backbone scission generating macromolecular fragments, followed by secondary fragmentation that preferentially occurs at short-chain hydrocarbon formation sites alongside radical recombination. Ultimately, the process progresses to deep dehydrogenation, carbonization, and heteroatom elimination through sequential reaction steps. Mechanistic analysis identifies multi-pathway pyrolysis involving carboxyl/amide bond cleavage and radical-mediated transformations (N-C-O, C-C-O, OH· and H·), yielding primary products including H2, CO, H2O, CH3N, C2H2, and C2H4. Crucially, the cyclohexane structure demonstrates preferential participation in dehydrogenation and hydrogen transfer reactions due to its conformational dynamic instability and low bond dissociation energy, significantly accelerating the rapid generation of small molecules like H2. Full article
(This article belongs to the Section Polymer Chemistry)
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16 pages, 4044 KB  
Article
Reaction Pathway Analysis of Methane and Propylene Cracking: A Reactive Force Field Simulation Approach
by Wei Yang, Yiqiang Hong, Youpei Du, Zhen Dai, Guangyuan Cui, Geng Chen, Dabo Xing, Yunlong Ma, Lei Liang and Hongyang Cui
Materials 2025, 18(12), 2672; https://doi.org/10.3390/ma18122672 - 6 Jun 2025
Viewed by 1212
Abstract
This study presents the development and validation of an elementary reaction pathway tracking algorithm based on reactive force field simulations, enabling the dynamic monitoring of cracking products at the 20,000-atom scale, the accurate identification of chain reaction pathways, and the comprehensive tracking of [...] Read more.
This study presents the development and validation of an elementary reaction pathway tracking algorithm based on reactive force field simulations, enabling the dynamic monitoring of cracking products at the 20,000-atom scale, the accurate identification of chain reaction pathways, and the comprehensive tracking of large carbon chain formation. The research demonstrates that the differences between methane and propylene cracking–polymerization reactions primarily stem from disparities in bond dissociation energies, radical stabilities, and molecular topologies, and the operation of molecular dynamics relies on LAMMPS 3 March 2020. The cracking pathway of methane is relatively straightforward, predominantly involving the homolytic cleavage of C–H bonds, followed by radical chain propagation leading to the formation of large carbonaceous species. In contrast, propylene, owing to its unsaturated structure and multiple reactive sites, exhibits more complex reaction networks and a wider diversity of products. Furthermore, the study elucidates the reaction pathways of intermediate species during methane and propylene cracking and investigates the effect of reaction temperature on carbon sheet development. In conclusion, the algorithm established in this work offers a detailed mechanistic insight into the gas-phase cracking of methane and propylene, providing a new theoretical basis for the optimization of gas-phase deposition processes and the rational design of carbon-based materials. Full article
(This article belongs to the Section Energy Materials)
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15 pages, 2265 KB  
Article
Shock Wave-Induced Degradation of Polyethylene and Polystyrene: A Reactive Molecular Dynamics Study on Nanoplastic Transformation in Aqueous Environments
by Tomasz Panczyk, Marcin Cichy and Monika Panczyk
Molecules 2025, 30(10), 2164; https://doi.org/10.3390/molecules30102164 - 14 May 2025
Cited by 1 | Viewed by 1775
Abstract
Degradation of polyethylene and polystyrene was studied theoretically using reactive molecular dynamics based on the ReaxFF force field. The degradation reactions were carried out on nanoparticles (approximately 2 nm in diameter) composed of ideal low-density polyethylene and polystyrene in the presence of water. [...] Read more.
Degradation of polyethylene and polystyrene was studied theoretically using reactive molecular dynamics based on the ReaxFF force field. The degradation reactions were carried out on nanoparticles (approximately 2 nm in diameter) composed of ideal low-density polyethylene and polystyrene in the presence of water. The reactions leading to degradation were triggered by applying a shock wave through the simulation box. This approach allowed the energy to be transferred to the sample in a controllable manner and initiated the reactions. The state of the nanoparticles after the shock wave passage was investigated in detail, focusing on the type and quantities of new surface functional groups and new chemical connections in the bulk samples. It was found that polyethylene predominantly reveals surface hydroxyl groups (some of which can be protonated) and has the ability to release linear polyhydroxy alcohols. Other surface functional groups with significant presence are ether groups. The degradation of polystyrene proceeds through the addition of hydroxyl groups primarily to the benzene rings, causing their dearomatization. The number of hydroxyl groups in a single ring increases with the degree of degradation, and some hydroxyl groups are also protonated. Polystyrene is also susceptible to crosslink formation, mainly between aromatic rings, leading to branched and dearomatized forms that are chemically distinct from styrene. Full article
(This article belongs to the Special Issue Exclusive Feature Papers in Physical Chemistry, 3rd Edition)
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38 pages, 5548 KB  
Review
Reactive Molecular Dynamics in Ionic Liquids: A Review of Simulation Techniques and Applications
by Márta Gődény and Christian Schröder
Liquids 2025, 5(1), 8; https://doi.org/10.3390/liquids5010008 - 14 Mar 2025
Cited by 9 | Viewed by 7210
Abstract
Ionic liquids exhibit distinctive solvation and reactive properties, making them highly relevant for applications in energy storage, catalysis, and CO2 capture. However, their complex molecular interactions, including proton transfer and physisorption/chemisorption, necessitate advanced computational efforts to model them at the atomic scale. [...] Read more.
Ionic liquids exhibit distinctive solvation and reactive properties, making them highly relevant for applications in energy storage, catalysis, and CO2 capture. However, their complex molecular interactions, including proton transfer and physisorption/chemisorption, necessitate advanced computational efforts to model them at the atomic scale. This review examines key molecular dynamics approaches for simulating ionic liquid reactivity, including quantum-mechanical methods, conventional reactive force fields such as ReaxFF, and fractional force fields employed in PROTEX. The strengths and limitations of each method are assessed within the context of ionic liquid simulations. While quantum-mechanical simulations provide detailed electronic insights, their high computational cost restricts system size and simulation timescales. Reactive force fields enable bond breaking and formation in larger systems but require extensive parameterization. These approaches are well suited for investigating reaction pathways influenced by the local environment, which can also be partially addressed using multiscale simulations. Fractional force fields offer an efficient alternative for simulating significantly larger reactive systems over extended timescales. Instead of resolving individual reaction mechanisms in full detail, they incorporate reaction probabilities to model complex coupled reactions. This approach enables the study of macroscopic properties, such as conductivity and viscosity, as well as proton transport mechanisms like the Grotthuß process—phenomena that remain inaccessible to other computational methods. Full article
(This article belongs to the Section Molecular Liquids)
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