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31 pages, 1850 KB  
Review
Bacteriophages as Potential Sustainable Alternatives to Antibiotics for Controlling Salmonella in the Poultry Value Chain
by David Yembilla Yamik, Kitiya Vongkamjan, Vincent Guyonnet, Warangkana Kitpipit and Wattana Pelyuntha
Antibiotics 2026, 15(6), 628; https://doi.org/10.3390/antibiotics15060628 (registering DOI) - 22 Jun 2026
Abstract
Salmonella remains one of the most critical zoonotic pathogens in the poultry sector, linked to animal disease, foodborne illness, and the global crisis of antimicrobial resistance (AMR). Poultry acts as a major reservoir, enabling Salmonella transmission from hatchery to retail products through horizontal, [...] Read more.
Salmonella remains one of the most critical zoonotic pathogens in the poultry sector, linked to animal disease, foodborne illness, and the global crisis of antimicrobial resistance (AMR). Poultry acts as a major reservoir, enabling Salmonella transmission from hatchery to retail products through horizontal, vertical, and environmental routes. Despite the use of biosecurity, vaccination, antibiotics, and chemical decontamination, effective and sustainable control across the poultry value chain remains difficult, particularly in the face of rising multidrug-resistant strains and growing consumer concerns over chemical residues. Bacteriophages (phages), viruses that selectively infect and lyse bacteria, have emerged as a promising biological alternative for Salmonella control. Although many studies have reported the effectiveness of phages against bacterial species, including Salmonella, in the poultry industry, reports on their full potential to combat antimicrobial-resistant Salmonella across the entire poultry value chain remain limited. Therefore, this review synthesizes current evidence on the application of phages throughout the poultry value chain, including on-farm interventions, processing plant decontamination, and food packaging and storage. Findings from the reviewed articles indicate over a 90% reduction in Salmonella spp. in poultry farms and post-harvest meat, along with lower mortality in phage-treated groups compared to untreated groups; however, these outcomes depend on several factors (e.g., phage strains, concentrations, application methods, and environmental conditions). Laboratory, pilot, and field studies consistently demonstrate that phage preparations, especially when formulated as cocktails or combined with complementary interventions, can achieve substantial reductions in Salmonella, including antibiotic-resistant serovars, in live birds, eggs, poultry environments, and meat products. Unlike antibiotics and chemical sanitizers, phages act with high specificity, preserving beneficial microbiota and maintaining the sensory and nutritional quality of poultry products. Their safety has been supported by toxicological and genomic assessments, and several phage-based products have obtained regulatory approval, including Generally Recognized as Safe (GRAS) status for food applications in the United States. By integrating efficacy, safety, regulatory, and practical deployment data, this review highlights bacteriophages as a scientifically validated and One Health–aligned tool capable of reducing Salmonella transmission from farm to fork across the poultry value chain, thereby laying the foundation for their future adoption in the poultry industry. Phage-based interventions offer a sustainable pathway to enhance food safety, limit antimicrobial resistance (AMR) dissemination, and strengthen consumer confidence in poultry products. However, the major limitation is the emergence of phage-resistant bacterial strains, as well as the potential involvement of some phages in the transfer of resistance and virulence genes, which could raise public concern. Nevertheless, the use of phage cocktails and whole-genome sequencing, involving tools such as ResFinder and virulence finder, can facilitate the selection of safe phages for application. Full article
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13 pages, 1550 KB  
Article
Prevalence and Age-Associated Bacterial Chondronecrosis with Osteomyelitis Lesions in Commercial Broiler Flocks in Central Java, Indonesia
by Andi Asnayanti, Aji Praba Baskara, Muhsin Al Anas, Anh Dang Trieu Do, Douglas Rhoads and Adnan A. K. Alrubaye
Animals 2026, 16(12), 1910; https://doi.org/10.3390/ani16121910 (registering DOI) - 19 Jun 2026
Viewed by 72
Abstract
In tropical countries, broiler chickens are exposed to elevated ambient temperatures and humidity, which are sometimes exacerbated by high stocking densities and poor litter quality, thereby predisposing birds to severe stress, weakening immune function, and promoting BCO lameness progression. BCO lameness causes tremendous [...] Read more.
In tropical countries, broiler chickens are exposed to elevated ambient temperatures and humidity, which are sometimes exacerbated by high stocking densities and poor litter quality, thereby predisposing birds to severe stress, weakening immune function, and promoting BCO lameness progression. BCO lameness causes tremendous economic losses to the poultry industry and increases the risk of foodborne disease. BCO is frequently underdiagnosed in live populations, resulting in an iceberg phenomenon in which subclinical lesions are more prevalent than clinically apparent lameness. Therefore, a total of 500 Cobb500 broiler chickens from five commercial broiler flocks in Central Java, Indonesia, were randomly selected, weighed, slaughtered, and necropsied to evaluate the prevalence of BCO lameness lesions in the proximal femoral and tibial heads across distinct market ages ranging from 33 to 43 days. The ambient housing temperature in the region can reach 28–29 °C during the day. The results showed that more than 80% of the samples had normal femora at 33 days of age with an average body weight of 1.9 kg. A significant increase in the frequency and severity of femoral and tibial lesions was recorded at 35 to 36 days of age, when the average body weight reached approximately 2.5 kg. The high frequency of worsening BCO lesions observed during the 5th week suggests an age-related pattern in BCO occurrence during the late stages of grow-out. These findings suggest that improvements in nutrition, environment, and production management strategies before 36 days of age are necessary to mitigate the impact of BCO lameness in the poultry industry. Full article
(This article belongs to the Special Issue Bacterial Disease Research in Livestock and Poultry)
17 pages, 3124 KB  
Article
Innate Pathway Selection Modulates Antibody and T-Cell Responses to Mosaic Influenza Nucleoprotein in Cattle
by Clara Cole, Thomas Cleven, Marlee Henige, Keith Poulsen, Mike Maroney, Lautaro Rostoll-Cangiano, Doerte Doepfer and Marulasiddappa Suresh
Viruses 2026, 18(6), 670; https://doi.org/10.3390/v18060670 - 13 Jun 2026
Viewed by 484
Abstract
Highly pathogenic avian influenza (HPAI) is a lethal disease of poultry that has recently spilled over into mammals, including dairy cattle and humans, heightening concerns for livestock health, food security, and pandemic emergence. While vaccines that induce neutralizing antibodies against hemagglutinin and neuraminidase [...] Read more.
Highly pathogenic avian influenza (HPAI) is a lethal disease of poultry that has recently spilled over into mammals, including dairy cattle and humans, heightening concerns for livestock health, food security, and pandemic emergence. While vaccines that induce neutralizing antibodies against hemagglutinin and neuraminidase provide strain-specific protection, durable cross-subtype immunity requires T-cell responses targeting conserved internal antigens such as nucleoprotein (NP). To leverage these conserved targets, we utilized a previously engineered mosaic nucleoprotein (MNP) incorporating T-cell epitopes from thousands of influenza A virus (IAV) strains, conferring broad protection against epidemic (H3N2) and pandemic (H1N1) IAV in mice. Here, we tested whether precision adjuvancy could differentially imprint adaptive immunity to MNP in cattle. Combination formulations paired the carbomer-based nano-emulsion Adjuplex (ADJ) with either a STING agonist (cyclic dinucleotides; CdN) or a TLR4 agonist (glucopyranosyl lipid A; GLA) to program distinct inflammatory milieus. Both formulations elicited circulating IFN-γ–producing T cell responses and NP-specific antibodies in serum and milk. However, STING activation via CdN generated more potent and consistent cellular and humoral immunity than TLR4 engagement. These data demonstrate that selective activation of innate sensing pathways functionally imprints adaptive immune magnitude and quality in a large animal host. By advancing a broadly protective, T-cell-focused vaccine strategy in cattle, this work supports a One Health framework to mitigate H5N1 transmission risk at the human–animal interface. Full article
(This article belongs to the Special Issue The Role of Adjuvants in Viral Vaccines and Vaccination)
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17 pages, 5380 KB  
Article
Integrated Network Pharmacology and Cross-Species Analysis Suggest a Potential Role of AKT1/HIF1A Axis in Shuanghuanglian for Pneumonia–Myocarditis Comorbidity
by Yongquan Shi, Wenwen Ding, Hongbin Duan, Hua Zhang, Panpan Sun, Kuohai Fan, Wei Yin, Jianzhong Wang, Jia Zhong, Huizhen Yang, Zhenbiao Zhang, Yaogui Sun, Hongquan Li and Na Sun
Vet. Sci. 2026, 13(6), 578; https://doi.org/10.3390/vetsci13060578 - 12 Jun 2026
Viewed by 278
Abstract
Shuanghuanglian oral liquid (SHL) is widely used in companion animals and poultry, but its molecular mechanism in pneumonia–myocarditis comorbidity and heart–lung inflammatory crosstalk remains largely unclear. This computational study investigated the conserved AKT1/HIF1A-mediated immunoregulatory mechanism of SHL and its cross-species translational potential in [...] Read more.
Shuanghuanglian oral liquid (SHL) is widely used in companion animals and poultry, but its molecular mechanism in pneumonia–myocarditis comorbidity and heart–lung inflammatory crosstalk remains largely unclear. This computational study investigated the conserved AKT1/HIF1A-mediated immunoregulatory mechanism of SHL and its cross-species translational potential in veterinary medicine. Network pharmacology was integrated with GO, KEGG, and Reactome enrichment analyses, protein–protein interaction network construction, ADMET evaluation, cross-species sequence homology analysis (human, dog, cattle, and pig), molecular docking, and molecular dynamics simulation. A total of 61 active compounds, 251 putative targets, and 52 common targets associated with pneumonia and myocarditis were identified. These targets were mainly enriched in inflammation- and immune-related pathways, including TNF, IL-17, AGE–RAGE, and PPAR signaling. AKT1 and HIF1A showed high sequence conservation across species (85–98%). Key compounds exhibited favorable binding affinity to AKT1, and molecular dynamics simulation suggested the stability of the Baicalein–AKT1 complex. ADMET analysis suggested favorable pharmacokinetic properties and low predicted toxicity. These findings suggest that SHL may potentially alleviate pneumonia and myocarditis through modulation of the conserved AKT1/HIF1A axis and support its potential as a complementary therapeutic approach for managing heart–lung inflammatory diseases in multiple livestock species. This entirely computational study highlights promising mechanisms that should be further validated in vivo. Full article
(This article belongs to the Section Veterinary Physiology, Pharmacology, and Toxicology)
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31 pages, 2663 KB  
Review
Natural Adsorbents as Therapeutic Candidates Against Necrotic Enteritis in Poultry: A Conceptual Review
by Samuel Eleojo Agada and Samson Oladokun
Agriculture 2026, 16(12), 1299; https://doi.org/10.3390/agriculture16121299 - 12 Jun 2026
Viewed by 413
Abstract
Necrotic enteritis (NE), primarily associated with Clostridium perfringens, remains a major enteric disease in poultry production, particularly under reduced-antibiotic and antibiotic-free systems. Natural adsorbents, including biochar, clay minerals, and graphite-based materials, have attracted interest because of their capacity to interact with toxins, microbial [...] Read more.
Necrotic enteritis (NE), primarily associated with Clostridium perfringens, remains a major enteric disease in poultry production, particularly under reduced-antibiotic and antibiotic-free systems. Natural adsorbents, including biochar, clay minerals, and graphite-based materials, have attracted interest because of their capacity to interact with toxins, microbial metabolites, pathogens, and the intestinal environment. This conceptual review synthesizes current evidence on the physicochemical and biological properties of these materials and evaluates their potential relevance to NE mitigation. Biochar and clay minerals have stronger poultry-related evidence, particularly for mycotoxin adsorption, gut microbial modulation, and performance responses, whereas graphite remains an emerging candidate supported mainly by in vitro, non-poultry, and graphite-derivative literature. Across all three adsorbent classes, direct evidence for NetB-specific adsorption is currently absent, making this a central research gap rather than an established mechanism. Therefore, this review proposes a structured evaluation pipeline integrating material characterization, in vitro toxin-binding and epithelial response assays, and in vivo poultry NE outcomes such as lesion scores, CP burden, barrier integrity, inflammation, oxidative stress, microbiome shifts, and growth performance. Overall, natural adsorbents should be viewed as promising but incompletely validated candidates requiring standardized, NE-specific testing before therapeutic or commercial application. Full article
(This article belongs to the Special Issue Gut Microbiome and Health of Poultry)
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29 pages, 2860 KB  
Review
Mitochondrial Communication with Cellular Organelles in the Pathogenesis of Fatty Liver Disease in Domestic and Model Animals
by Tuoyu Geng, Amaal Omara, Ali Shoaib Moawad, Aneeqa Imtiaz, Wajeeha Tanveer, Minmeng Zhao and Jing Ge
Animals 2026, 16(12), 1800; https://doi.org/10.3390/ani16121800 - 10 Jun 2026
Viewed by 170
Abstract
Fatty liver disease represents a major metabolic disorder affecting domestic animals worldwide, with significant implications for animal health, welfare, and agricultural productivity. Disrupted communication between mitochondria and other organelles—particularly the endoplasmic reticulum, lipid droplets, and lysosomes—plays a critical role in disease pathogenesis. This [...] Read more.
Fatty liver disease represents a major metabolic disorder affecting domestic animals worldwide, with significant implications for animal health, welfare, and agricultural productivity. Disrupted communication between mitochondria and other organelles—particularly the endoplasmic reticulum, lipid droplets, and lysosomes—plays a critical role in disease pathogenesis. This review synthesizes knowledge on inter-organellar communication across domestic animals, with emphasis on species-specific adaptations. We address the “Dairy Cow Paradox”—periparturient dairy cows develop severe hepatic steatosis (>30% liver fat), yet under sterile conditions, they have a higher threshold for progressing to sterile steatohepatitis compared to rodents and humans. However, it is critical to note that severe fatty liver in dairy cows is indeed associated with impaired autophagy, inflammation, and liver damage, particularly when accompanied by ketosis or concurrent infections, and 39% of transition cows exhibit moderate to severe lymphocytic hepatitis. We propose that the tolerance to severe steatosis in dairy cows arises from three adaptations: (1) attenuated innate immune sensing via the cGAS-STING pathway; (2) enhanced lipid buffering from perilipin 5 (PLIN5) with a hypothesized ruminant-specific Val152 substitution that may stabilize lipid droplet–mitochondria contacts; and (3) dampened calcium signaling due to ER–mitochondria membrane lipid raft rigidity, elevated inositol 1,4,5-trisphosphate receptor 2 (IP3R2) expression, and reduced mitochondrial calcium uniporter (MCU) conductance. We contrast this with the inflammatory steatohepatitis common in rodent models driven by calcium overload and mitochondrial DNA (mtDNA) release, and glucocorticoid-mediated mitofusin 1 (MFN1) suppression, causing mitochondrial fragmentation in poultry. We identify critical knowledge gaps, including the need to define bovine and avian mitochondria-associated endoplasmic reticulum membrane (MAM) proteomes and spatially resolve hepatic zonal communication patterns. Targeting organellar communication hubs with nutraceuticals or pharmacological agents offers promising therapeutic strategies. Full article
(This article belongs to the Special Issue Lipid Metabolism in Poultry and Strategies to Modify It)
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16 pages, 3404 KB  
Review
The Dual Roles of Autophagy in Important Picornaviruses Infecting Livestock and Poultry
by Haibin Ma, Rongchang Liu and Ming Liao
Vet. Sci. 2026, 13(6), 567; https://doi.org/10.3390/vetsci13060567 - 9 Jun 2026
Viewed by 237
Abstract
Autophagy is a conserved catabolic process that degrades damaged proteins and organelles to preserve cellular homeostasis. Autophagy plays two opposing roles during viral infection. On the one hand, it can be subverted by viruses to facilitate replication and immune evasion. On the other [...] Read more.
Autophagy is a conserved catabolic process that degrades damaged proteins and organelles to preserve cellular homeostasis. Autophagy plays two opposing roles during viral infection. On the one hand, it can be subverted by viruses to facilitate replication and immune evasion. On the other hand, it limits viral infection by delivering viral components to lysosomes. The interaction between autophagy and important picornaviruses that infect cattle and poultry, such as SVV, EMCV, FMDV, and DHAV, is the main topic of this paper. However, comprehensive summaries focusing specifically on livestock and poultry remain limited. We summarize current research showing that these viruses evade host protection by manipulating several steps of the autophagic pathway, from initiation to lysosomal fusion, to produce replication-favorable environments. Notably, by directing the breakdown of viral capsid proteins, specific autophagy receptors such as SQSTM1/p62, NDP52, and optineurin (OPTN) serve as antiviral effectors. In response, picornaviruses have developed proteolytic strategies to inactivate these receptors, such as SVV 3C-mediated cleavage of SQSTM1 and OPTN. Moreover, different immune evasion tactics are shown by virus-specific engagement of organelle-selective autophagy, such as ER-phagy (SVV) or mitophagy (DHAV). The development of broad-spectrum antiviral treatments and autophagy-based biomarkers for livestock disease progression may benefit from an understanding of the convergent and different ways picornaviruses take advantage of the autophagic machinery. Full article
(This article belongs to the Section Veterinary Microbiology, Parasitology and Immunology)
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18 pages, 804 KB  
Article
Dietary Clusters and Mortality Risk in a Chinese Population: The Role of Type 2 Diabetes and Hypertension
by Chuhan Wei, Xikang Fan, Mengxia Li, Zidong Wang, Jiaxi Zhou, Jun Lv, Canqing Yu, Dianjianyi Sun, Pei Pei, Yan Lu, Yujie Hua, Jiang Hua, Jian Su, Jinyi Zhou and Ran Tao
Nutrients 2026, 18(11), 1816; https://doi.org/10.3390/nu18111816 - 4 Jun 2026
Viewed by 310
Abstract
Background: Regional dietary variations in China are well-documented, but their mortality associations in local populations, particularly among individuals with type 2 diabetes (T2D) or hypertension, remain unclear. This study aimed to identify dietary clusters in Suzhou and investigate their associations with mortality. [...] Read more.
Background: Regional dietary variations in China are well-documented, but their mortality associations in local populations, particularly among individuals with type 2 diabetes (T2D) or hypertension, remain unclear. This study aimed to identify dietary clusters in Suzhou and investigate their associations with mortality. Methods: This prospective analysis included 53,269 participants aged 30–79 years from the China Kadoorie Biobank (CKB) Suzhou Wuzhong subcohort. The baseline diet was assessed via a food frequency questionnaire, and three dietary clusters were identified by K-means clustering of 10 food groups. Multivariable Cox models were used to estimate hazard ratios (HRs) and 95% confidence intervals (CIs) for all-cause, cardiovascular disease (CVD), diabetes-related, and cancer mortality, stratified by baseline health status, T2D, and hypertension. Results: During follow-up, 1263 deaths occurred among healthy adults, 351 in T2D, and 2410 in hypertension. The Traditional/Preserved-Heavy cluster was characterized by lower intake frequencies across most food groups and more frequent preserved vegetable intake; the Meat-Centric cluster by relatively moderate intake frequencies and higher meat and poultry intake; and the Plant-and-Dairy-Abundant cluster by relatively abundant overall dietary intake, more frequent intake of fresh fruit, dairy products, and soybean products, and less frequent preserved vegetable intake. With the Meat-Centric cluster (cluster 2) as the reference, the Plant-and-Dairy-Abundant cluster (cluster 3) in T2D was associated with lower all-cause (HR = 0.61, 95% CI: 0.44–0.85), CVD (0.47, 0.24–0.91), and diabetes-related mortality (0.25, 0.09–0.71). BMI modified the association with all-cause mortality in T2D (p interaction = 0.033). In hypertension, cluster 1 was linked to higher all-cause (1.13, 1.03–1.23) and CVD mortality (1.17, 1.00–1.37), whereas cluster 3 was associated with a lower risk of diabetes-related mortality (0.40, 0.16–0.98). Conclusions: A dietary habit rich in fruit, dairy products, soybean products, and less frequent preserved vegetable intake was associated with lower mortality risk, particularly in T2D patients, whereas a habit with lower overall intake and more frequent preserved vegetable intake was linked to higher mortality in hypertension participants. These findings should be interpreted in light of the accompanying socioeconomic and lifestyle differences across dietary clusters. Full article
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33 pages, 3880 KB  
Review
Reducing Antibiotic Dependence in Poultry: The Potential of Phytochemicals as Antibiotic Alternatives Against Bacterial Foodborne Pathogens
by Rithu Chandran, Thomas Denagamage, Daniel M. Czyz, Subhashinie Kariyawasam and Abraham Joseph Pellissery
Trop. Med. Infect. Dis. 2026, 11(6), 153; https://doi.org/10.3390/tropicalmed11060153 - 4 Jun 2026
Viewed by 489
Abstract
Antimicrobial resistance (AMR) is one of the most serious threats to global public health, driven in part by extensive antibiotic use in food-producing animals. The poultry industry, a major contributor to the global animal protein supply, has depended on antibiotics for growth promotion [...] Read more.
Antimicrobial resistance (AMR) is one of the most serious threats to global public health, driven in part by extensive antibiotic use in food-producing animals. The poultry industry, a major contributor to the global animal protein supply, has depended on antibiotics for growth promotion and disease control, thereby contributing to the emergence and dissemination of AMR zoonotic bacteria. This review synthesizes current evidence on the potential of phytochemicals (PCs), plant-derived bioactive compounds, as sustainable non-antibiotic alternatives for controlling bacterial foodborne pathogens in poultry. Relevant literature including in vitro and in vivo studies assessing PCs against major poultry-associated zoonotic bacteria, including Salmonella enterica, Campylobacter spp., Clostridium perfringens, Listeria monocytogenes, and pathogenic Escherichia coli, is examined. Evidence indicates that PCs exert antimicrobial and anti-virulence effects through mechanisms like bacterial membrane disruption, inhibition of quorum sensing and virulence gene expression, modulation of gut microbiota, and enhancement of host immune responses. In vivo studies demonstrate reductions in pathogen colonization and improvements in gut health and performance metrics in poultry. Despite these promising findings, challenges remain in bioavailability, dose optimization, standardization, and regulatory approval. Overall, PCs represent a promising component of integrated antimicrobial stewardship strategies in poultry production, with significant implications for mitigating zoonotic AMR transmission. Full article
(This article belongs to the Special Issue Zoonotic Pathogens and Antimicrobial Resistance)
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14 pages, 678 KB  
Review
From Ebola to H5N1: Strengthening the U.S. Special Pathogen Response System
by Anthony Joseph Lo Piccolo, Erin McGuire, Radu Postelnicu, Kathryn Jano, Ryan Leone, Eliana Jacobson, Angela Vasa, Michelle Schwedhelm and Vikramjit Mukherjee
Epidemiologia 2026, 7(3), 79; https://doi.org/10.3390/epidemiologia7030079 - 4 Jun 2026
Viewed by 232
Abstract
The National Special Pathogens System (NSPS) stratifies U.S. healthcare facilities by their readiness level to care for patients with high-consequence infectious diseases (HCIDs). While NSPS Level 1 and 2 facilities possess advanced biocontainment capabilities to care for patients for the duration of their [...] Read more.
The National Special Pathogens System (NSPS) stratifies U.S. healthcare facilities by their readiness level to care for patients with high-consequence infectious diseases (HCIDs). While NSPS Level 1 and 2 facilities possess advanced biocontainment capabilities to care for patients for the duration of their illness, most U.S. hospitals fall under a NSPS Level 3 or 4 designation, with limited resources to manage patients with a suspected or confirmed HCID. However, emerging zoonotic threats like H5N1 underscore the need to bolster HCID preparedness across all NSPS Levels. Beginning in March 2024, the U.S. H5N1 outbreak has primarily impacted wild bird flocks, poultry, and cattle, along with some human infections. The continuation of this outbreak in wild and domesticated animals increases the likelihood of further human spillover and eventual viral evolution in human hosts. At the frontlines, rural farming communities are likely to be most affected, with potential outbreaks exacerbated by a lack of accessible NSPS Level 1, 2, or 3 facilities in these regions. Thus, strengthening the HCID preparedness of local NSPS Level 4 facilities is critical to preventing transmission, minimizing societal disruption, protecting communities and the healthcare workforce, along with ensuring an equitable, coordinated response to future emerging infectious disease threats. This manuscript explores the financial, societal and health system impacts of HCID outbreaks to delineate the necessity of strengthening the preparedness of NSPS Level 4 facilities. Full article
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17 pages, 5214 KB  
Article
Antiviral Activity of Polyene Macrolides Against Newcastle Disease Virus: Computational and Experimental Insights
by Aidar Mukhametkaliyev, Andrey Bogoyavlenskiy, Pavel Alexyuk, Madina Alexyuk, Nadezhda Sokolova, Yergali Moldakhanov, Kuralay Akanova, Aziza Temirbayeva, Assilbek Mussoyev, Krzysztof Śmietanka and Vladimir Berezin
Molecules 2026, 31(11), 1915; https://doi.org/10.3390/molecules31111915 - 2 Jun 2026
Viewed by 359
Abstract
The search for novel antiviral agents against Newcastle disease virus (NDV) remains a priority in industrial poultry farming due to the virus’s high contagiousness and associated economic losses, prompting evaluation of polyene macrolides as potential therapeutic candidates. We employed a comprehensive approach combining [...] Read more.
The search for novel antiviral agents against Newcastle disease virus (NDV) remains a priority in industrial poultry farming due to the virus’s high contagiousness and associated economic losses, prompting evaluation of polyene macrolides as potential therapeutic candidates. We employed a comprehensive approach combining computational modeling (molecular docking and dynamics simulation) and laboratory experiments to investigate the antiviral potential of natamycin, nystatin, and filipin complex against three NDV strains. Molecular docking analysis indicated binding sites for macrolides within the hydrophobic regions of surface glycoproteins HN and F, with binding energies ranging from −6.5 to −10.5 kcal/mol, while 50 ns molecular dynamics simulation confirmed complex stability. Laboratory testing using fluorescence-based neuraminidase assays demonstrated dose-dependent inhibitory activity with IC50 values of 0.0043 ± 0.0015 mg/mL for filipin complex, 0.0117 ± 0.0029 mg/mL for nystatin, and 0.0220 ± 0.0138 mg/mL for natamycin, with similar ranking observed for fusion inhibition (EC50 values of 0.00053 ± 0.00039, 0.00545 ± 0.00560, and 0.01196 ± 0.00965 mg/mL, respectively). While filipin complex exhibited the highest antiviral activity, its significant cytotoxicity limits therapeutic application, whereas natamycin demonstrated a favorable safety profile consistent with its GRAS status. These findings indicate that natamycin exhibits a favorable safety-to-efficacy profile in vitro, warranting further in vivo investigation to clarify its mechanism of action and establish practical application protocols for NDV control in poultry. Full article
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17 pages, 1270 KB  
Review
Shiga Toxin-Producing Escherichia coli in Poultry: Virulence, Antimicrobial Resistance, and Zoonotic Implications
by Arjmand Fatima and Muhammad Naeem
Bacteria 2026, 5(2), 31; https://doi.org/10.3390/bacteria5020031 - 1 Jun 2026
Viewed by 319
Abstract
Shiga toxin-producing Escherichia coli (STEC) is a major zoonotic foodborne pathogen associated with severe human illnesses, including hemorrhagic colitis and hemolytic uremic syndrome. While ruminants are traditionally recognized as the primary reservoirs, increasing evidence suggests that poultry production systems may also contribute to [...] Read more.
Shiga toxin-producing Escherichia coli (STEC) is a major zoonotic foodborne pathogen associated with severe human illnesses, including hemorrhagic colitis and hemolytic uremic syndrome. While ruminants are traditionally recognized as the primary reservoirs, increasing evidence suggests that poultry production systems may also contribute to the dissemination of pathogenic and antimicrobial-resistant E. coli through the food chain. However, the extent of this contribution and its relevance to human infection remain incompletely understood. This review provides a critical synthesis of the virulence mechanisms, epidemiology, and antimicrobial resistance (AMR) of E. coli, with particular emphasis on STEC in poultry production systems. Key virulence determinants, including Shiga toxins (Stx1 and Stx2), the locus of enterocyte effacement, and plasmid-encoded factors, are discussed in relation to their roles in host colonization and disease progression. Transmission pathways within poultry production and processing environments are examined, highlighting critical points of contamination from farm to consumer. The increasing prevalence of multidrug-resistant and extended-spectrum β-lactamase-producing E. coli in poultry underscores significant public health concerns. However, variability in epidemiological data and limitations in current surveillance systems complicate the interpretation of transmission dynamics. Current and emerging control strategies, including biosecurity measures, alternative antimicrobial interventions, and processing hygiene, are evaluated alongside their practical limitations under commercial conditions. Overall, this review identifies key knowledge gaps and emphasizes the need for integrated, evidence-based approaches within a One Health framework to better define zoonotic risks and develop sustainable control strategies. Full article
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22 pages, 473 KB  
Review
Natural Products Against Mycoplasma gallisepticum: Emerging Alternatives to Combat Antimicrobial Resistance
by Rong Xi, Ban Li, Yue Wu, Chengbo Wen, Yunchen Zhou, Zhiyong Wu, Dexian Zhang and Jichang Li
Microorganisms 2026, 14(6), 1222; https://doi.org/10.3390/microorganisms14061222 - 28 May 2026
Viewed by 333
Abstract
Antimicrobial resistance in Mycoplasma gallisepticum (MG), a primary causative agent of chronic respiratory disease in poultry, has reached alarming levels, underscoring the urgent need for alternative strategies. Natural products have emerged as promising candidates owing to their multi-target mechanisms of action. This review [...] Read more.
Antimicrobial resistance in Mycoplasma gallisepticum (MG), a primary causative agent of chronic respiratory disease in poultry, has reached alarming levels, underscoring the urgent need for alternative strategies. Natural products have emerged as promising candidates owing to their multi-target mechanisms of action. This review synthesizes current evidence on natural anti-MG agents, critically appraising their in vitro and in vivo efficacy, molecular mechanisms, and translational potential. A mechanistic taxonomy is proposed for distinguishing direct pathogen-directed mechanisms (membrane disruption, adhesion inhibition, virulence factor neutralization) from indirect host-directed mechanisms, notably NF-κB/MAPK pathway modulation and gut–lung axis immunoregulation. Emphasis is placed on anti-infective polypharmacology, exemplified by luteolin’s dual inhibition of the TatD virulence factor and host inflammatory cascades. The gut–lung axis represents a novel therapeutic frontier, with Bacillus subtilis KC1 controlling respiratory mycoplasmosis through intestinal microbiome remodeling and systemic AhR activation. Despite encouraging efficacy data, critical knowledge gaps persist, including a scarcity of rigorous in vivo trials under commercial conditions, incomplete mechanistic characterization, and challenges in standardizing complex natural product formulations. Natural products are best positioned not as wholesale antibiotic replacements but as integral components of integrated, antibiotic-sparing strategies aligned with antimicrobial stewardship and One Health principles. Full article
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28 pages, 2501 KB  
Review
Impact of Functional Feed Additives and Lower Antibiotic Use on Poultry Meat Quality and Consumer Perception
by Abdul Samad, Ayesha Muazzam, AMM Nurul Alam, SoHee Kim, ChanJin Kim, SiHoon An, Young-Hwa Hwang and Seon-Tea Joo
Foods 2026, 15(11), 1868; https://doi.org/10.3390/foods15111868 - 25 May 2026
Viewed by 526
Abstract
The poultry industry is undergoing a major transition to reduce the use of antibiotics, as a result of the growing concerns about antimicrobial resistance, antibiotic residue in meat and increasingly stringent regulatory policies. This trend has led to an increased interest in functional [...] Read more.
The poultry industry is undergoing a major transition to reduce the use of antibiotics, as a result of the growing concerns about antimicrobial resistance, antibiotic residue in meat and increasingly stringent regulatory policies. This trend has led to an increased interest in functional feed additives as potential alternatives that may support bird health, growth performance and meat quality. There are functional additives, including probiotics, prebiotics, synbiotics, phytogenics, organic acids, enzymes, essential oils, vitamins, minerals and postbiotics, that have shown potential effectiveness in enhancing gut health, nutrient utilization, immunity and disease resistance in poultry. The advantages that are frequently noticed are increased feed conversion ratio, body weight gain, carcass yield and improved meat quality characteristics, such as water-holding capacity, color stability, tenderness, oxidative stability and shelf life. Furthermore, the decrease in the use of antibiotics decreases the risk of residues and also the transmission of antimicrobial resistance genes through the food chain and the environment. Consumer interest in antibiotic-free and naturally raised poultry meat has also led to the emergence of premium market opportunities, where trust, transparency in poultry labelling and perceived safety are key drivers of consumer acceptance. But there are issues yet to be addressed regarding additive efficacy variability, dosage standardization, cost-effectiveness and implementation on farms under different production systems. This review critically evaluates the scientific evidence related to the use of functional feed additives as an alternative to antibiotics in poultry nutrition, focusing on their effects on meat quality, food safety, economic viability, sustainability and consumer perception. Precision nutrition, combinations of synergistic additives, and data-driven feed strategies will be key to future progress to enable profitable and sustainable poultry production. Full article
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Article
Survey of Bacterial Chondronecrosis with Osteomyelitis Lesion Incidence in Broiler Farms in Kazakhstan Regions
by Anh Dang Trieu Do, Gulim Assetova, Andi Asnayanti, Aizhan Akhmetzhanova, Assel Zhexenayeva, Dauletbek Muratbayev, Dilora Senkebayeva, Bakytzhan Bolkenov and Adnan Alrubaye
Animals 2026, 16(11), 1584; https://doi.org/10.3390/ani16111584 - 23 May 2026
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Abstract
Lameness associated with bacterial chondronecrosis with osteomyelitis (BCO) continues to be an important topic of great interest to global poultry production. Caused by bacterial infection of susceptible necrotic bone tissue, the disease severely affects animal health, welfare, and productivity, leading to significant economic [...] Read more.
Lameness associated with bacterial chondronecrosis with osteomyelitis (BCO) continues to be an important topic of great interest to global poultry production. Caused by bacterial infection of susceptible necrotic bone tissue, the disease severely affects animal health, welfare, and productivity, leading to significant economic losses annually. In recent years, the Kazakhstan poultry industry has enjoyed significant investment and strong growth, with goals of self-sufficiency within the decade. However, there remains a significant knowledge gap in poultry research in the nation, especially regarding the topic of BCO lameness. As such, this study aims to provide a preliminary evaluation of BCO lesion prevalence in different geographical regions of the country―namely Abai, Almaty, and Akmola. In each region, about 200 broilers from local poultry farms were procured, humanely euthanized, and necropsied to evaluate prevalence of femoral and tibial lesions commonly associated with BCO lameness. On average, most broilers had no damage to femoral head (78.17%) followed by femoral head separation (FHS, 11.94%), while the tibial head saw ubiquitous degrees of damage ranging from severe (71.42%) to observable (23.06%). These findings signify potential underlying issues connected to BCO lameness that will necessitate early management and intervention measures to prevent future spread of the disease. Full article
(This article belongs to the Special Issue Common Infectious Diseases in Poultry)
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