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Keywords = nutrient-poor soil

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29 pages, 10773 KiB  
Article
Facilitation in the Dry Season: Species Interactions Between a Limestone-Endemic Plant and Moss Altered by Precipitation Dynamics
by Ali Raza, Shao-Jun Ling, Ya-Li Wei, Saraj Bahadur and Ming-Xun Ren
Plants 2025, 14(16), 2588; https://doi.org/10.3390/plants14162588 - 20 Aug 2025
Viewed by 201
Abstract
Plant-to-plant interactions are essential for structuring plant communities and supporting adaptation in nutrient-poor, seasonally dry environments. This study examined the interactions between moss Leucobryum aduncum Dozy & Molk and Oreocharis hainanensis by analyzing microbial communities and physicochemical parameters across various sample types. These [...] Read more.
Plant-to-plant interactions are essential for structuring plant communities and supporting adaptation in nutrient-poor, seasonally dry environments. This study examined the interactions between moss Leucobryum aduncum Dozy & Molk and Oreocharis hainanensis by analyzing microbial communities and physicochemical parameters across various sample types. These included soil [bare (B), O. hainanensis (O), moss (M), and moss + O. hainanensis (MO)], rhizosphere soil [O. hainanensis (ORS), moss (MRS), and moss + O. hainanensis (MORS)], and root [O. hainanensis (OHR), moss (MR), and moss + O. hainanensis (MOR)] using metagenomics sequencing across dry and wet seasons in limestone habitats on Hainan Island. During the dry season, combined plant samples MOR, MO, and MORS showed higher nutrients, supported by microbes that enhance nutrient turnover, which may indicate facilitation. Conversely, during the wet season, increased moisture leads to decreased nutrient levels and microbial communities shift, associated with slower nutrient turnover in combined plant samples, which may reflect competition. According to KEGG analysis, an increase in oxidative phosphorylation and ABC transporters in the dry season supported the facilitative interaction, while quorum sensing and two-component systems supported the competitive interaction in the wet season. These findings show how shifts between facilitation and competition arise from seasonal conditions and microbes in the limestone ecosystem. Full article
(This article belongs to the Section Plant–Soil Interactions)
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17 pages, 1198 KiB  
Article
The Qualitative and Quantitative Relationship of Lettuce Grown in Soilless Systems in a Mediterranean Greenhouse
by Gabriella Impallomeni, Antonio Lupini, Agostino Sorgonà, Antonio Gattuso and Francesco Barreca
Int. J. Plant Biol. 2025, 16(3), 94; https://doi.org/10.3390/ijpb16030094 - 18 Aug 2025
Viewed by 176
Abstract
This study evaluated the qualitative and quantitative performance of lettuce (cv. Romana) grown using different cultivation systems under Mediterranean greenhouse conditions equipped with photoluminescent glass panels. Five systems were compared: outdoor soil (PSO), indoor soil (PSI), aeroponic (A), hydroponic with inorganic nutrients (HSN), [...] Read more.
This study evaluated the qualitative and quantitative performance of lettuce (cv. Romana) grown using different cultivation systems under Mediterranean greenhouse conditions equipped with photoluminescent glass panels. Five systems were compared: outdoor soil (PSO), indoor soil (PSI), aeroponic (A), hydroponic with inorganic nutrients (HSN), and hydroponic with organic nutrients (HSO). Morphological, physiological, and quality parameters were measured alongside solar irradiance and extended PAR. The results showed that aeroponics significantly outperformed other systems in fresh weight (52.7 g), photosynthetic pigments, and carotenoids, while HSO showed the lowest yield and quality. Although PSO had the highest antioxidant activity and phenolic content, it exhibited poor yield due to lower water use efficiency and light-induced stress. The PCA analysis highlighted distinct groupings among systems, with A linked to yield and pigment concentration, and PSO associated with antioxidant traits. Despite a 44.8% reduction in solar radiation inside the greenhouse, soilless systems—especially aeroponics—proved effective for maintaining high productivity and quality. These findings support the integration of soilless systems and photoluminescent technologies as sustainable strategies for high-efficiency lettuce production in controlled environments. Full article
(This article belongs to the Section Plant Physiology)
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17 pages, 5600 KiB  
Article
From Marshes to Mines: Germination and Establishment of Crinum bulbispermum on Gold Mine Tailings
by Vincent C. Clarke, Sarina Claassens, Dirk P. Cilliers and Stefan J. Siebert
Plants 2025, 14(15), 2443; https://doi.org/10.3390/plants14152443 - 7 Aug 2025
Viewed by 290
Abstract
The growth potential of Crinum bulbispermum was evaluated on gold mine tailings. The primary objectives were to model the species’ climatic niche in relation to gold mining regions, assess its germination success on tailings, and compare seedling survival and growth on tailings versus [...] Read more.
The growth potential of Crinum bulbispermum was evaluated on gold mine tailings. The primary objectives were to model the species’ climatic niche in relation to gold mining regions, assess its germination success on tailings, and compare seedling survival and growth on tailings versus other soil types. Species distribution modelling identified the South African Grassland Biome on the Highveld (1000+ m above sea level), where the majority of gold mines are located, as highly suitable for the species. Pot trials demonstrated above 85% germination success across all soil treatments, including gold mine tailings, indicating its potential for restoration through direct seeding. An initial seedling establishment rate of 100% further demonstrated the species’ resilience to mine tailings, which are often seasonally dry, nutrient-poor, and may contain potentially toxic metals. However, while C. bulbispermum was able to germinate and establish in mine tailings, long-term growth potential (over 12 months) was constrained by low organic carbon content (0.11%) and high salinity (194.50 mS/m). These findings underscore the critical role of soil chemistry and organic matter in supporting long-term plant establishment and growth on gold tailings. Building on previous research, this study confirms the ability of this thick-rooted geophyte to tolerate chemically extreme soil conditions. Crinum bulbispermum shows promise for phytostabilization and as a potential medicinal plant crop on tailings. However, future research on microbial community interactions and soil amendment strategies is essential to ensure its long-term sustainability. Full article
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17 pages, 7385 KiB  
Article
Microbial Alliance of Paenibacillus sp. SPR11 and Bradyrhizobium yuanmingense PR3 Enhances Nitrogen Fixation, Yield, and Salinity Tolerance in Black Gram Under Saline, Nutrient-Depleted Soils
by Praveen Kumar Tiwari, Anchal Kumar Srivastava, Rachana Singh and Alok Kumar Srivastava
Nitrogen 2025, 6(3), 66; https://doi.org/10.3390/nitrogen6030066 - 7 Aug 2025
Viewed by 379
Abstract
Salinity is a major abiotic stress limiting black gram (Vigna mungo) productivity, particularly in arid and semi-arid regions. Saline soils negatively impact plant growth, nodulation, nitrogen fixation, and yield. This study evaluated the efficacy of co-inoculating salt-tolerant plant growth-promoting bacteria Paenibacillus [...] Read more.
Salinity is a major abiotic stress limiting black gram (Vigna mungo) productivity, particularly in arid and semi-arid regions. Saline soils negatively impact plant growth, nodulation, nitrogen fixation, and yield. This study evaluated the efficacy of co-inoculating salt-tolerant plant growth-promoting bacteria Paenibacillus sp. SPR11 and Bradyrhizobium yuanmingense PR3 on black gram performance under saline field conditions (EC: 8.87 dS m−1; pH: 8.37) with low organic carbon (0.6%) and nutrient deficiencies. In vitro assays demonstrated the biocontrol potential of SPR11, inhibiting Fusarium oxysporum and Macrophomina phaseolina by 76% and 62%, respectively. Germination assays and net house experiments under 300 mM NaCl stress showed that co-inoculation significantly improved physiological traits, including germination rate, root length (61.39%), shoot biomass (59.95%), and nitrogen fixation (52.4%) in nitrogen-free media. Field trials further revealed enhanced stress tolerance markers: chlorophyll content increased by 54.74%, proline by 50.89%, and antioxidant enzyme activities (SOD, CAT, PAL) were significantly upregulated. Electrolyte leakage was reduced by 55.77%, indicating improved membrane stability. Agronomic performance also improved, with co-inoculated plants showing increased root length (7.19%), grain yield (15.55 q ha−1; 77.04% over control), total biomass (26.73 q ha−1; 57.06%), and straw yield (8.18 q ha−1). Pod number, seed count, and seed weight were also enhanced. Nutrient analysis showed elevated uptake of nitrogen, phosphorus, potassium, and key micronutrients (Zn, Fe) in both grain and straw. To the best of our knowledge, this is the very first field-based report demonstrating the synergistic benefits of co-inoculating Paenibacillus sp. SPR11 and Bradyrhizobium yuanmingense PR3 in black gram under saline, nutrient-poor conditions without external nitrogen inputs. The results highlight a sustainable strategy to enhance legume productivity and resilience in salt-affected soils. Full article
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17 pages, 6632 KiB  
Article
Metabolomic and Physiological Analysis of Blueberry (Vaccinium spp.) in Response to Ericoid Mycorrhizal Fungi (Oidiodendron maius H14)
by Haifeng Zhu, Yixiao Wang, Jing Jiang, Zhiyu Yang, Lili Li and Hongyi Yang
Horticulturae 2025, 11(8), 918; https://doi.org/10.3390/horticulturae11080918 - 5 Aug 2025
Viewed by 335
Abstract
Ericoid mycorrhizal fungi (EMF) enhance plant fitness and metabolic regulations in nutrient-poor soils, though the mechanisms diving these interactions require further elucidation. This study investigated the physiological and metabolic responses of blueberry seedlings following 2- and 3-weeks inoculation with Oidiodendron maius H14. The [...] Read more.
Ericoid mycorrhizal fungi (EMF) enhance plant fitness and metabolic regulations in nutrient-poor soils, though the mechanisms diving these interactions require further elucidation. This study investigated the physiological and metabolic responses of blueberry seedlings following 2- and 3-weeks inoculation with Oidiodendron maius H14. The results indicated that EMF could significantly increases plant biomass, improve the accumulation of osmoregulatory substances in leaves. Additionally, the colonization rate of EMF are 26.18% and 30.22% after 2- and 3-weeks, respectively. The Metabolomics analysis identified 758 (593 up- and 165 down-regulated) and 805 (577 up- and 228 down-regulated) differential metabolites in roots at 2- and 3-weeks inoculation with O. maius H14, respectively. KEGG pathway annotation revealed that O. maius H14 triggered various amino acid metabolism pathways, including tryptophan metabolism and arginine and proline metabolism. These findings suggested that O. maius H14 stimulated root-specific biosynthesis of growth-promoting compounds and antimicrobial compounds. Concomitant downregulation of stress-associated genes and upregulation of glutamine synthetase suggest EMF modulates host defense responses to facilitate symbiosis. Thus, our results demonstrated that O. maius H14 orchestrates a metabolic reprogramming in blueberry roots, enhancing growth and stress tolerance through coordinated changes in primary and specialized metabolism, which could inform strategies for improving symbiosis and metabolic engineering in horticultural practices. Full article
(This article belongs to the Section Fruit Production Systems)
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14 pages, 2284 KiB  
Article
Rhizobacteria’s Effects on the Growth and Competitiveness of Solidago canadensis Under Nutrient Limitation
by Zhi-Yun Huang, Ying Li, Hu-Anhe Xiong, Misbah Naz, Meng-Ting Yan, Rui-Ke Zhang, Jun-Zhen Liu, Xi-Tong Ren, Guang-Qian Ren, Zhi-Cong Dai and Dao-Lin Du
Agriculture 2025, 15(15), 1646; https://doi.org/10.3390/agriculture15151646 - 30 Jul 2025
Viewed by 278
Abstract
The role of rhizosphere bacteria in facilitating plant invasion is increasingly acknowledged, yet the influence of specific microbial functional traits remains insufficiently understood. This study addresses this gap by isolating two bacterial strains, Bacillus sp. ScRB44 and Pseudomonas sp. ScRB22, from the rhizosphere [...] Read more.
The role of rhizosphere bacteria in facilitating plant invasion is increasingly acknowledged, yet the influence of specific microbial functional traits remains insufficiently understood. This study addresses this gap by isolating two bacterial strains, Bacillus sp. ScRB44 and Pseudomonas sp. ScRB22, from the rhizosphere of the invasive weed Solidago canadensis. We assessed their nitrogen utilization capacity and indoleacetic acid (IAA) production capabilities to evaluate their ecological functions. Our three-stage experimental design encompassed strain promotion, nutrient stress, and competition phases. Bacillus sp. ScRB44 demonstrated robust IAA production and significantly improved the nitrogen utilization efficiency, significantly enhancing S. canadensis growth, especially under nutrient-poor conditions, and promoting a shift in biomass allocation toward the roots, thereby conferring a competitive advantage over native species. Conversely, Pseudomonas sp. ScRB22 exhibited limited functional activity and a negligible impact on plant performance. These findings underscore that the ecological impact of rhizosphere bacteria on invasive weeds is closely linked to their specific growth-promoting functions. By enhancing stress adaptation and optimizing resource allocation, certain microorganisms may facilitate the establishment of invasive weeds in adverse environments. This study highlights the significance of microbial functional traits in invasion ecology and suggests novel approaches for microbiome-based invasive weed management, with potential applications in agricultural soil health improvement and ecological restoration. Full article
(This article belongs to the Topic Microbe-Induced Abiotic Stress Alleviation in Plants)
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16 pages, 1477 KiB  
Article
Co-Inoculation Between Bacteria and Algae from Biological Soil Crusts and Their Effects on the Growth of Poa annua and Sandy Soils Quality
by Lin Peng, Xuqiang Xie, Man Chen, Fengjie Qiao, Xingyu Liu, Yutong Zhao, Xiawei Peng and Fangchun Liu
Microorganisms 2025, 13(8), 1778; https://doi.org/10.3390/microorganisms13081778 - 30 Jul 2025
Viewed by 327
Abstract
Microorganisms (bacteria and algae) are important components of biological soil crusts, which exhibit crucial functions in promoting plant growth, maintaining soil structure, and improving soil nutrient content. To determine the effects of combined inoculation on the growth of Poa annua and sandy soils, [...] Read more.
Microorganisms (bacteria and algae) are important components of biological soil crusts, which exhibit crucial functions in promoting plant growth, maintaining soil structure, and improving soil nutrient content. To determine the effects of combined inoculation on the growth of Poa annua and sandy soils, four species of bacteria and algae were isolated and identified from biological soil crusts (during different developmental stages in a karst rocky desertification area). The soil quality was evaluated based on a soil quality index (SQI), growth indicators of Poa annua, soil physicochemical properties, and a stability analysis of aggregates. With the application of nutrient-poor sandy soils as the substrate, different treatment inoculation solutions were inoculated onto Poa annua. The results revealed that bacteria–algal co-inoculation reduces soil acidity, enhances soil nutrient content and aggregate stability, improves soil quality, and protects plant growth. Notably, compared with the single application of bacterial solution and algal solution, the combined application of bacteria–algal solution significantly improves the sandy soil quality. Full article
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14 pages, 2651 KiB  
Article
Conifer Growth Patterns in Primary Succession Locations at Mount St. Helens
by Alicia Rose, Cody Blackketter, Marisa D. Fisher, Carri J. LeRoy and Dylan G. Fischer
Forests 2025, 16(8), 1245; https://doi.org/10.3390/f16081245 - 30 Jul 2025
Viewed by 350
Abstract
The 1980 eruption of Mount St. Helens (WA, USA) presented a unique opportunity to observe primary succession in a post-eruption landscape previously dominated by conifer forests. The eruption scoured soil and biological communities adjacent to the mountain, and species of conifers have generally [...] Read more.
The 1980 eruption of Mount St. Helens (WA, USA) presented a unique opportunity to observe primary succession in a post-eruption landscape previously dominated by conifer forests. The eruption scoured soil and biological communities adjacent to the mountain, and species of conifers have generally been slow to colonize the nutrient-poor substrate surrounding the volcano. Further, different species of conifer establish and grow at different rates. The recent advancement of conifers in the post-eruption landscape has highlighted a research gap related to conifer growth patterns. We measured the height, age, and incremental growth of 472 trees representing three common conifers, Pseudotsuga menziesii, Abies procera, and Pinus contorta, on debris avalanche (80 sites) and pyroclastic flow (82 sites) disturbance zones of the 1980 eruption. We paired annual incremental growth with recent climate data. We found that height, age, and growth rates differ among species and sites. All species had higher growth rates on the debris avalanche deposit compared to the pyroclastic flow due to either climate or substrate. Climate influences were mixed, where one species increased growth with temperature, another declined, and another was unrelated. Nevertheless, more than 40 years after the eruption, we find rapid height growth in species with implications for future forests. Full article
(This article belongs to the Section Forest Ecology and Management)
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16 pages, 1850 KiB  
Article
Effect of Biochar-Coated Urea on Soil Nitrogen, Plant Uptake, and Sweet Corn Yield in Sandy Soil
by Sa’adah Shofiati, Gabryna Auliya Nugroho, Zaenal Kusuma and Syahrul Kurniawan
Nitrogen 2025, 6(3), 61; https://doi.org/10.3390/nitrogen6030061 - 28 Jul 2025
Viewed by 415
Abstract
The low nitrogen-use efficiency (NUE) in sandy soils, due to high porosity and poor nutrient retention, necessitates proper management in fertilization. This study aims to evaluate the effect of biochar-coated urea (BCU) with different coating thicknesses and nitrogen doses on soil nitrogen content, [...] Read more.
The low nitrogen-use efficiency (NUE) in sandy soils, due to high porosity and poor nutrient retention, necessitates proper management in fertilization. This study aims to evaluate the effect of biochar-coated urea (BCU) with different coating thicknesses and nitrogen doses on soil nitrogen content, nitrogen uptake, NUE, growth, and yield of sweet corn in sandy soil. The experiment used a factorial randomized block design with two factors, including biochar coating thicknesses (i.e., 14% and 29%) and fertilization doses (i.e., 50%, 100%, 150%, 200%, and 250%). The results showed that the 29% biochar coating thickness led to 9.9–21.3% higher plant height, N uptake, and N-use efficiency, but it led to 22.8% lower yield, as compared to the 14% biochar coating thickness. Additionally, the application of BCU doses of 100% and 150% (~161 and 241.5 kg N/ha) led to 9.2–97.3% higher maize growth, yield, N uptake, and NEU as compared to the other doses (i.e., 50%, 100%, 250%). This study confirmed that the combination of a 29% biochar coating thickness with 150% of the recommended BCU dose (~241.5 kg N/ha) was the best combination, resulting in the highest N uptake, growth, and yield of maize. Full article
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13 pages, 1373 KiB  
Article
A Comparative Plant Growth Study of a Sprayable, Degradable Polyester–Urethane–Urea Mulch and Two Commercial Plastic Mulches
by Cuyler Borrowman, Karen Little, Raju Adhikari, Kei Saito, Stuart Gordon and Antonio F. Patti
Agriculture 2025, 15(15), 1581; https://doi.org/10.3390/agriculture15151581 - 23 Jul 2025
Viewed by 415
Abstract
The practice in agriculture of spreading polyethylene (PE) film over the soil surface as mulch is a common, global practice that aids in conserving water, increasing crop yields, suppressing weed growth, and decreasing growing time. However, these films are typically only used for [...] Read more.
The practice in agriculture of spreading polyethylene (PE) film over the soil surface as mulch is a common, global practice that aids in conserving water, increasing crop yields, suppressing weed growth, and decreasing growing time. However, these films are typically only used for a single growing season, and thus, their use and non-biodegradability come with some serious environmental consequences due to their persistence in the soil and potential for microplastic pollution, particularly when retrieval and disposal options are poor. On the microscale, particles < 5 mm from degraded films have been observed to disrupt soil structure, impede water and nutrient cycling, and affect soil organisms and plant health. On the macroscale, there are obvious and serious environmental consequences associated with the burning of plastic film and its leakage from poorly managed landfills. To maintain the crop productivity afforded by mulching with PE film while avoiding the environmental downsides, the development and use of biodegradable polymer technologies is being explored. Here, the efficacy of a newly developed, water-dispersible, sprayable, and biodegradable polyester–urethane–urea (PEUU)-based polymer was compared with two commercial PE mulches, non-degradable polyethylene (NPE) and OPE (ox-degradable polyethylene), in a greenhouse tomato growth trial. Water savings and the effects on plant growth and soil characteristics were studied. It was found that PEUU provided similar water savings to the commercial PE-based mulches, up to 30–35%, while showing no deleterious effects on plant growth. The results should be taken as preliminary indications that the sprayable, biodegradable PEUU shows promise as a replacement for PE mulch, with further studies under outside field conditions warranted to assess its cost effectiveness in improving crop yields and, importantly, its longer-term impacts on soil and terrestrial fauna. Full article
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18 pages, 6976 KiB  
Article
Molecular Mechanisms Underlying Sweet Potato (Ipomoea batatas L.) Responses to Phosphorus Deficiency
by Zhufang Yao, Zhongxia Luo, Hongda Zou, Yiling Yang, Bingzhi Jiang, Lifei Huang and Zhangying Wang
Agronomy 2025, 15(7), 1745; https://doi.org/10.3390/agronomy15071745 - 20 Jul 2025
Viewed by 372
Abstract
Phosphorus deficiency poses a significant challenge to the growth and productivity of crops, particularly in nutrient-poor soils. This study investigates the effects of phosphorus deficiency on the growth, endogenous phytohormones, metabolome, and transcriptome of sweet potato (Ipomoea batatas L.) over a growth [...] Read more.
Phosphorus deficiency poses a significant challenge to the growth and productivity of crops, particularly in nutrient-poor soils. This study investigates the effects of phosphorus deficiency on the growth, endogenous phytohormones, metabolome, and transcriptome of sweet potato (Ipomoea batatas L.) over a growth period from 30 to 120 days. We found that low phosphorus conditions significantly reduced both above- and below-ground biomass, while tuber number remained unchanged. Endogenous phytohormone analysis revealed altered levels of abscisic acid (ABA), indole-3-acetic acid (IAA), and cytokinins, indicating a complex hormonal response to phosphorus starvation. Transcriptomic analysis identified a total of 6324 differentially expressed genes (DEGs) at 60 days, with significant enrichment in pathways related to stress response and phosphorus utilization (PAPs and PHO1). Metabolomic profiling revealed notable shifts in key metabolites, with consistent downregulation of several phosphorous-related compounds. Our findings highlight the intricate interplay between growth, hormonal regulation, metabolic reprogramming, and gene expression in response to phosphorus deficiency in sweet potato. This research underscores the importance of understanding nutrient stress responses to enhance sweet potato resilience and inform sustainable agricultural practices. Future research should focus on exploring the potential for genetic and agronomic interventions to mitigate the effects of phosphorus deficiency and optimize sweet potato productivity in challenging environments. Full article
(This article belongs to the Section Plant-Crop Biology and Biochemistry)
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17 pages, 2166 KiB  
Article
Effects of Fertilizer Application on Growth and Stoichiometric Characteristics of Nitrogen, Phosphorus, and Potassium in Balsa Tree (Ochroma lagopus) Plantations at Different Slope Positions
by Jialan Chen, Weisong Zhu, Yuanxi Liu, Gang Chen, Juncheng Han, Wenhao Zhang and Junwen Wu
Plants 2025, 14(14), 2221; https://doi.org/10.3390/plants14142221 - 18 Jul 2025
Viewed by 321
Abstract
Ochroma lagopus, a fast-growing tropical tree species, faces fertilization challenges due to slope heterogeneity in plantations. This study examined 3-year-old Ochroma lagopus at upper and lower slope positions under five treatments: CK (no fertilizer), F1 (600 g/plant), F2 (800 g/plant), F3 (1000 [...] Read more.
Ochroma lagopus, a fast-growing tropical tree species, faces fertilization challenges due to slope heterogeneity in plantations. This study examined 3-year-old Ochroma lagopus at upper and lower slope positions under five treatments: CK (no fertilizer), F1 (600 g/plant), F2 (800 g/plant), F3 (1000 g/plant), and F4 (1200 g/plant) of secondary macronutrient water-soluble fertilizer. Growth parameters and N-P-K stoichiometry were analyzed. Key results: (1) Height increased continuously with fertilizer dosage at both slopes, while DBH peaked and then declined. (2) At upper slopes (nutrient-poor soil), fertilization elevated leaf P but reduced branch N/K and increased root P/K. At lower slopes (nutrient-rich soil), late-stage leaf N increased significantly, with roots accumulating P/K via a “storage strategy”. Stoichiometric thresholds indicated N-K co-limitation (early-mid stage) shifting to P limitation (late stage) on upper slopes and persistent N-K co-limitation on lower slopes. (3) PCA identified F4 (1200 g/plant) and F1 (600 g/plant) as optimal for upper and lower slopes, respectively. This research provides a theoretical basis for precision fertilization in Ochroma lagopus plantations, emphasizing slope-specific nutrient status and element interactions for dosage optimization. Full article
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19 pages, 4174 KiB  
Article
Genome-Wide Identification and Expression Analysis of the Shaker K+ Channel Gene Family in Cassava (Manihot esculenta Crantz) Under Potassium Stress
by Xianhai Xie, Chenyu Lin, Feilong Yu, Haozheng Li, Jin Xiao, Mingjuan Zheng, Wenquan Wang and Xin Guo
Plants 2025, 14(14), 2213; https://doi.org/10.3390/plants14142213 - 17 Jul 2025
Viewed by 414
Abstract
Shaker K+ channel proteins are responsible for potassium (K+) uptake and transport, playing a critical role in plant growth, development, and adaptation to K+ deficiency. Cassava, a key tropical root crop, is known for its characteristic of resilience to [...] Read more.
Shaker K+ channel proteins are responsible for potassium (K+) uptake and transport, playing a critical role in plant growth, development, and adaptation to K+ deficiency. Cassava, a key tropical root crop, is known for its characteristic of resilience to nutrient-poor soil and drought stress. However, the Shaker K+ channel gene family in cassava has not yet been characterized. In this study, 13 Shaker channel genes were identified from the near telomere-to-telomere (T2T) cassava genome using bioinformatics analysis. Phylogenetic relationships classified these genes into five distinct subfamilies, and all encoded proteins contained the conserved GYGD/GYGE motif typical of Shaker channels. Protein interaction network predictions revealed potential interactions among the Shaker family, as well as with the potassium transporter HAK5. Tissue-specific expression pattern analysis showed that MeGORK and MeAKT1.2 were expressed in all tissues. Furthermore, quantitative real-time PCR (qRT-PCR) analysis was conducted to examine the transcriptional levels of Shaker K+ channel gene family members in the roots and leaves of two cassava germplasms with different low-potassium tolerance after one month of low-potassium treatment. The results revealed that MeAKT1.2, MeAKT2.2, and MeKAT1 exhibited distinct expression patterns between the two germplasms, with higher expression levels observed in the potassium-tolerant germplasm. Therefore, these three genes may serve as important candidate genes for potassium stress tolerance in cassava. In summary, this study provides valuable insights into the characteristics and biological functions of the Shaker K+ channel gene family in cassava and identifies potential candidate genes for breeding or engineering potassium-efficient cassava cultivars. Full article
(This article belongs to the Special Issue Advances in Plant Nutrition Responses and Stress)
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20 pages, 3788 KiB  
Article
Assessing Forest Succession Along Environment, Trait, and Composition Gradients in the Brazilian Atlantic Forest
by Carem Valente, Renan Hollunder, Cristiane Moura, Geovane Siqueira, Henrique Dias and Gilson da Silva
Forests 2025, 16(7), 1169; https://doi.org/10.3390/f16071169 - 16 Jul 2025
Viewed by 507
Abstract
Tropical forests face increasing threats and are often replaced by secondary forests that regenerate after disturbances. In the Atlantic Forest, this creates fragments of different successional stages. The aim of this study is to understand how soil nutrients and light availability gradients influence [...] Read more.
Tropical forests face increasing threats and are often replaced by secondary forests that regenerate after disturbances. In the Atlantic Forest, this creates fragments of different successional stages. The aim of this study is to understand how soil nutrients and light availability gradients influence the species composition and structure of trees and regenerating strata in remnants of lowland rainforest. We sampled 15 plots for the tree stratum (DBH ≥ 5 cm) and 45 units for the regenerating stratum (height ≥ 50 cm, DBH < 5 cm), obtaining phytosociological, entropy and equitability data for both strata. Canopy openness was assessed with hemispherical photos and soil samples were homogenized. To analyze the interactions between the vegetation of the tree layer and the environmental variables, we carried out three principal component analyses and two redundancy analyses and applied a linear model. The young fragments showed good recovery, significant species diversity, and positive successional changes, while the older ones had higher species richness and were in an advanced stage of succession. In addition, younger forests are associated with sandy, nutrient-poor soils and greater exposure to light, while mature forests have more fertile soils, display a greater diversity of dispersal strategies, are rich in soil clay, and have less light availability. Mature forests support biodiversity and regeneration better than secondary forests, highlighting the importance of preserving mature fragments and monitoring secondary ones to sustain tropical biodiversity. Full article
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20 pages, 1996 KiB  
Article
Disentangling and Closing the Nutrient-Based Potato Yield Gap Using Integrated Nutrient Management Under Temperate Environments of Sub-Saharan Africa
by Jabulani Ntuli, Nomali Ziphorah Ngobese, Lucky Sithole and Sandile Hadebe
Horticulturae 2025, 11(7), 835; https://doi.org/10.3390/horticulturae11070835 - 15 Jul 2025
Viewed by 490
Abstract
Closing the nutrient-based potato yield gap in sub-Saharan Africa (SSA) remains a major challenge due to low fertilizer use, degraded soils, and rising temperatures that exacerbate nutrient losses. Field experiments were conducted over two growing seasons to investigate the causes of the potato [...] Read more.
Closing the nutrient-based potato yield gap in sub-Saharan Africa (SSA) remains a major challenge due to low fertilizer use, degraded soils, and rising temperatures that exacerbate nutrient losses. Field experiments were conducted over two growing seasons to investigate the causes of the potato nutrient-based yield gap and develop an integrated nutrient management (INM) strategy aimed at narrowing this gap. Integrated nutrient management factors included three fertilizer application rates [no fertilizer (control), 50%, and 100% of recommended fertilizer application rates], two soil cover levels (grass mulch applied and absent), and four potato cultivars (Mondial, Sababa, Panamera, and Tyson). The study identified a substantial yield gap of 42–45 t/ha, largely driven by insufficient fertilizer application and poor nutrient retention. Integrating full recommended fertilizer rate, mulching, and Panamera closed up to 84% of this gap, achieving a yield of 43 t/ha. Notably, reduced fertilizer application combined with mulching and Panamera maintained high yields (35–41 t/ha), indicating that resource-efficient practices can sustain productivity. These findings underscore the importance of coupling judicious fertilizer use with nutrient loss-mitigating and nutrient uptake-enhancing strategies. Further research is needed to address the residual yield gap and assess the economic feasibility of INM adoption under potato farming conditions in SSA. Full article
(This article belongs to the Section Protected Culture)
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