Search Results (457)

In this study, the effects of electric-field intensity on N transformation during aerobic composting of biochar/pig manure were investigated. Four experimental groups were established under different applied voltages: 0 V (Group CK); 2 V (Group L); 4 V (Group M); and 5 V (Group H). The physicochemical properties of compost, as well as the nitrogen content and its existing forms in the compost, were systematically analyzed. The underlying mechanisms were further explored from the microscopic perspective by analyzing the pore structure of biochar and the microbial diversity in compost. The results showed that the total nitrogen content in compost increased by 5.66–20.87% with the application of the electric field. Cumulative NH₃ emissions decreased by 37.43%, 31.35%, and 40.95% in groups L, M, and H, respectively, while the NO₂ content decreased by 40.73%, 87.93%, and 94.44%, respectively, reducing the N losses during composting. The electric field significantly promoted the migration of nutrients from the compost to the surface of cotton stalk biochar. It also enhanced the microporous structure and adsorption capacity of cotton stalk biochar, thereby facilitating interfacial deposition and N immobilization. The amplification and sequencing of 16S rRNA gene further revealed that Ruminofilibacter, norank_f_MWH-CFBk5, and HN-HF0106 were the key bacterial genera affecting the gas emissions during aerobic composting. Among them, Ruminofilibacter and HN-HF0106 promoted the emission of N₂O, while norank_f_MWH-CFBk5 and Planktosalinus reduced NH₃ emission. This finding indicates that the electric field regulated N transformation and promoted N retention in compost by inhibiting the reproduction of denitrifying bacteria and increasing the abundance of nitrifying and nitrogen-fixing bacteria. This study confirms that electric field and biochar synergistically affect the nitrogen immobilization and waste resource utilization by optimizing the metabolic pathways of microorganisms and the structural characteristics of biochar. Full article

To address the challenges of low land use efficiency, soil degradation, and high management costs in Ilex asprella cultivation, this study established an I. asprella–Grona styracifolia intercropping system and systematically evaluated its effects on soil nutrient cycling, microbial communities, and crop growth. Field experiments were conducted in Yunfu City, Guangdong Province, with monoculture (LCK for I. asprella, DCK for G. styracifolia) and three intercropping densities (HDT, LDT, MDT). Combining 16S rRNA sequencing and metagenomics, we analyzed the functional profile of the rhizosphere microbiome. The results showed that intercropping significantly increased the biomass of G. styracifolia, with the medium-density (MDT) treatment increasing plant length and fresh weight by 41.2% and 2.4 times, respectively, compared to monoculture. However, high-density intercropping suppressed the accumulation of medicinal compounds. In terms of soil properties, intercropping significantly enhanced soil organic carbon (SOC), total nitrogen (TN), total phosphorus (TP), and available nitrogen (AN) in the rhizosphere of both plants. Specifically, AN in the I. asprella rhizosphere increased by 18.9%. Soil urease and acid phosphatase activities were also elevated, while pH decreased. Microbial analysis revealed that intercropping reshaped the rhizosphere microbial community structure, significantly increased the Shannon diversity index of bacteria in the G. styracifolia rhizosphere, and enhanced the complexity of the microbial co-occurrence network. Metagenomic analysis further confirmed that intercropping enriched functional genes related to carbon fixation, nitrogen cycling (nitrogen fixation, assimilatory nitrate reduction), and organic phosphorus mineralization (the phoD gene), thereby driving the transformation and availability of soil nutrients. These findings demonstrate that the I. asprella–G. styracifolia intercropping system, particularly at medium density, effectively improves soil fertility and land use efficiency by regulating rhizosphere microbial functions, providing a theoretical basis for the sustainable ecological cultivation of I. asprella. Full article

The insect gut microbiome contributes to various host physiological processes and behaviors, such as digestion, nutrient absorption, immunity, mate choice, and fecundity. The social environment can shape gut microbial communities. Mixed-sex vs. female-only rearing is an important social context because it differs in exposure to the opposite sex and mating opportunities, which may in turn affect female physiology that may influence their gut microbiome. Despite the growing recognition of these social-microbial interactions, most studies have relied on 16S rRNA amplicon sequencing or qPCR, which provide only coarse taxonomic resolution and limited functional insight. In this study, we used whole-genome shotgun metagenomics to examine changes in microbial diversity and functional gene composition in the female field cricket Teleogryllus occipitalis (Serville) (Orthoptera: Gryllidae) reared under two social conditions: mixed-sex rearing and female-only rearing. Species richness and diversity analyses revealed that community composition separated between females from mixed-sex and female-only rearing. Functional profiling indicated higher relative abundances of genes annotated to nutrient processing and inter-bacterial competition in females from mixed-sex rearing, whereas females from female-only rearing showed relative enrichment of genes annotated to stress resistance and nitrogen fixation. These findings provide a genome-resolved foundation for testing how social rearing conditions covary with gut microbiome composition and functional potential in female crickets. Full article

Bacteriophages are a key ecological factor in the legume rhizosphere, controlling bacterial populations and affecting introduced inoculant strains. Despite their importance, rhizobiophage genomic diversity remains poorly characterized. We report the complete genome of a novel predicted temperate Sinorhizobium phage, AP-202, isolated from agricultural Chernozem. This siphovirus infects the symbiont Sinorhizobium meliloti. Its 121,599 bp dsDNA genome has a strikingly low GC content (27.1%), likely reflecting adaptive evolution and a strategy to evade host defenses. The linear genome is flanked by 240 bp direct terminal repeats (DTRs), and its DNA packaging follows a T7-like strategy. Annotation predicted 178 protein-coding genes and one tRNA. Functional analysis revealed a complete lysogeny module and a divergent, two-pronged codon-usage strategy for translational control. A significant part of the proteome (74.2%) comprises hypothetical proteins, with 50 CDSs having no database homologs, underscoring its genetic novelty. Complete-genome comparison shows minimal similarity to known rhizobiophages, defining AP-202 as a distinct lineage. Phenotypic analysis indicates AP-202 acts as a selective ecological filter, with host resistance being more prevalent in agricultural than in natural soils. The AP-202 genome provides a unique model for studying phage–host coevolution in the rhizosphere and is a valuable resource for comparative genomics and soil virome research. Full article

In this study, a strain of green microalga adapted to the extreme environmental conditions of the Tibetan Plateau was isolated from the Lalu Wetland. The isolate was identified and tentatively designated as Micractinium sp. LL-1. Following the inoculation of strain LL-1 into tannery wastewater, the ammonia nitrogen concentration was rapidly reduced, achieving a removal efficiency of 98.7%. The maximum accumulated biomass reached 1641.68 mg/L and 1461.28 mg/L. Integrated transcriptomic and label-free quantitative proteomic approaches were employed to systematically investigate the molecular response mechanisms of LL-1 under tannery wastewater stress. Transcriptomic analysis revealed that differentially expressed genes were enriched in pathways related to cell proliferation, morphogenesis, intracellular transport, protein synthesis, photosynthesis, and redox processes. Proteomic analysis indicated that LL-1 enhances cellular and enzymatic activities, strengthens regulatory capacity, modulates key metabolic pathways, and upregulates stress-responsive proteins. Under tannery wastewater stress, LL-1 exhibits dynamic adaptation involving signal perception and metabolic reconfiguration through the coordinated regulation of multiple pathways. Specifically, ribosomal translation and nucleic acid binding regulate biosynthetic capacity; the redistribution of energy metabolism boosts photosynthetic carbon fixation and ATP generation; and membrane transport coupled with antioxidant mechanisms mitigates stress-induced damage. Collectively, this study provides theoretical insights into microalgal adaptation to complex wastewater environments and offers potential targets for strain improvement and wastewater valorization. Full article

The annual nitrogen loss from the livestock production sector poses a significant threat to the global natural environment. Therefore, it is urgent to focus on improving the nutrient utilization efficiency of ruminants and promoting the sustainable development of livestock production. Twelve 60-day-old Ganxi goats with similar body weights were selected and randomly assigned to two dietary treatment groups. The control group was fed only a basal diet, while the treatment group was supplemented with 32 mg/d of Swollenin. The experiment lasted for 30 days. At the end of the experimental period, the goats were euthanized, and their intestinal contents were collected, rapidly frozen, and stored at −80 °C for subsequent metagenomic and metabolomic analyses. In the Swollenin group, we observed changes in gut microbiota structure and significantly enhanced feed conversion efficiency compared to the control group. Notably, genera such as Bacteroides, Ruminococcus, and Bifidobacterium exhibited significantly higher abundance. Following Swollenin supplementation, the gene abundance associated with the secondary bile acid biosynthesis pathway in the intestinal tract of young goats was significantly higher. The levels of primary bile acids (BAs), including taurocholic acid, glycocholic acid, taurochenodeoxycholic acid, and glycochenodeoxycholic acid, were significantly lower, while the concentrations of secondary BAs such as ursodeoxycholic acid and deoxycholic acid were significantly higher. The abundance of nitrogen-fixing and nitrogen-assimilating genes in the gut of young goats in the Swollenin group was significantly higher. Furthermore, co-occurrence network analysis revealed a strong correlation between bile acid metabolism and nitrogen metabolism pathways. These results suggest that nutritional regulation may serve as a preventive strategy to optimize the symbiotic development of animals and their gut microbiota, ultimately improving nitrogen utilization. Full article

N₂-fixing bacteria have great potential to be used as biofertilizer in agriculture to promote plant growth via nitrogen fixation. In this study, a novel species Fontibacillus forbon sp. nov., with strain BL-9^T as the type strain, was isolated from the rhizosphere of Fraxinus chinensis. Strain BL-9^T was able to fix nitrogen and grow on nitrogen-free medium. Phylogenetic analysis of 16S rRNA gene revealed that strain BL-9^T was most closely related to Fontibacillus phaseoli BAPVE7B (98.03%), followed by Fontibacillus solani A4STR04 (96.72%), Fontibacillus panacisegetis (96.6%), Paenibacillus vini (96.6%), and Paenibacillus segetis DB13260 (96.57%). The phylogenomic tree supported that strain BL-9^T was most closely related to F. phaseoli BAPVE7B. The digital DNA-DNA hybridization (dDDH) and average nucleotide identity (ANI) between strain BL-9^T and its closely related type strain, F. phaseoli BAPVE7B, were 42.5% and 90.94%, respectively, which were below the values (70% for dDDH and 95% for ANI) for species discrimination. The DNA G+C content of strain BL-9^T was 49.7%. The genome of strain BL-9^T had a nif (nitrogen fixation) gene cluster containing 10 genes (nifB nifH nifD nifK nifE nifN nifX orf1 hesA nifV). The predominant fatty acid was anteiso-C15:0, the major menaquinone was MK-7, and the major polar lipid was diphosphatidylglycerol. Strain BL-9^T and its closely related species of Fontibacillus had some common and distinguished physiological characteristics. Based on genomic, phylogenetic, chemotaxonomic, and phenotypic features, strain BL-9^T represents a novel species of the genus Fontibacillus. The name proposed for this species is Fontibacillus forbon sp. nov., with the type strain BL-9^T. Full article

The coal mining subsidence area constitutes a distinct ecotone in the transition from agricultural soil to sediment, yet the microbially mediated nitrogen cycle within it remains inadequately understood. This investigation comprehensively analyzed physicochemical properties, microbial communities, functional genes, and co-occurrence networks along a 0–6500 mm depth gradient. Results indicated that pH transitioned from acidic to alkaline, while TN, TP, OM, and NH₄⁺–N accumulated with depth. NO₃⁻–N decreased rapidly within 1000 mm and then stabilized. Alpha-diversity showed an S-shaped increase in richness, with Shannon index peaking at 1500 mm. Beta-diversity shifted along PC1, and the shallow subsidence area (SS) influenced by NO₃⁻–N; the transition zone (TZ) regulated by OM, TN, and NH₄⁺–N; deep subsidence area (DS) was constrained by TP and pH. Microbial communities transitioned from aerobic/facultative to strictly anaerobic phyla, yet Pseudomonadota remained dominant (24–32%) across depths. With increasing depth, gene abundances for denitrification, assimilatory nitrate reduction to ammonium (ANRA), and nitrate assimilation declined, while those for dissimilatory nitrate reduction to ammonium (DNRA) and nitrification increased; nitrogen fixation remained weak. Co-occurrence networks shifted from highly connected, short-pathlength, and clustered in TZ to highly modular and long-pathlength in DS, with Aminicenantes, Syntrophus, and Methanoregula as key taxa. Overall, the thick and stable reducing zone in the subsidence area restructured the nitrogen cycle, shifting terminal products from N₂ removal to NH₄⁺ retention. These findings advance the understanding of nitrogen transformation in soil-sediment ecotones and provide a mechanistic framework for nitrogen cycling in mining-affected ecosystems. Full article

Nitrous oxide (N₂O), as one of the important greenhouse gases in the atmosphere, has a significant impact on global climate change. Its emissions are significantly regulated by land use changes, especially in ecologically fragile semi-arid areas. However, there is still a lack of systematic analysis on the key biotic and abiotic factors through which different land use patterns affect N₂O emissions. Therefore, this study focuses on four typical land use types in the Loess Plateau of central Gansu: Picea asperata (PA), Medicago sativa (MS), Abandoned land (AL), and Wheat field (WF). Static box gas chromatography was used to monitor soil N₂O flux in situ, and multidimensional analysis was conducted based on soil physicochemical properties, microbial community structure, and nitrogen cycling functional genes. Based on the observational data from the 2024 growing season (April to October), Research findings show that the cumulative emissions of N₂O from wheat fields increased significantly by 26.4%, 19.4%, and 39.8% compared to medicago sativa, abandoned land, and picea asperata, respectively. Mechanism analysis reveals that picea asperata promote nitrogen fixation and absorption in soil through higher soil water content and organic carbon content, as well as enrichment of Proteobacteria and high expression of nrfA and napA genes, thereby inhibiting N₂O production and emissions. The wheat fields, on the other hand, have significantly increased N₂O emissions due to the increased abundance of amoA_B, nxrB, and nirK functional genes and enhanced urease activity, which promote nitrification and denitrification processes. The Partial Least Squares Path Model (PLS-PM) further confirmed that nitrification functional genes are key driving factors for N₂O emissions. This study systematically reveals the microbial and biochemical pathways involved in regulating N₂O emissions through land use in semi-arid regions, providing a theoretical basis for regional nitrogen cycle management and climate mitigation. Full article

Traditional clean tillage in peach orchards leads to soil degradation and nitrogen (N) loss. While inter-row grassing can optimize N cycling, the specific rhizosphere microbial mechanisms involved have not been fully understood. This study investigated how different inter-row grassing modes influence N availability through microbial communities in a peach orchard. The experiment included a monoculture of Trifolium repens L. (Tr), a monoculture of Lolium perenne L. (Pr), their mixture (TPr), and clean tillage (CK). By combining soil physicochemical analyses, metagenomic sequencing, functional gene quantification, and multivariate statistics, the study systematically examined the impacts of inter-row grassing modes on soil N cycling. The results showed that inter-row grassing modes played a significant role in reshaping N processes. Pr enhanced mineralization and nitrification, increasing inorganic N through specific genes (amoA, hao). Tr, on the other hand, promoted diazotrophs (Bradyrhizobium) and dissimilatory nitrate-reducing bacteria, enhancing biological N fixation and retention. TPr combined these benefits, leading to enhanced nitrification, increased labile carbon, and elevated enzyme activities, creating a complex microbe–gene network that mediated nitrification and denitrification. Overall, inter-row grassing modulates rhizosphere functions by enhancing N cycling through a “carbon input–microbial regulation” mechanism, offering an effective strategy for improving N use efficiency and promoting sustainable orchard management. Full article

Eutrophication threatens vulnerable plateau lakes, yet the gene-level microbial processes behind spatial heterogeneity of sediment carbon (C), nitrogen (N), phosphorus (P) and sulfur (S) cycling and their environmental driver remain unclear. This study first applies the high-throughput Quantitative Microbial Ecology Chip (QMEC) to quantify 71 functional genes involved in geochemical cycling in sediment of a large Chinese plateau lake, Erhai, aiming to elucidate how environmental factors shape the spatial distribution and coupling patterns of these genes. The results revealed that total functional gene abundance exhibited a pronounced south-to-north decline, with key genes (rbcL, mct, nirS, nosZ, phoD, pqqC and yedZ) being significantly higher in the southern sector (p < 0.05). Lignocellulose-degrading genes (abfA, xylA and mnp) exceeded 10⁶ copies g⁻¹ and were significantly enriched in the south, indicating faster organic-matter turnover. Denitrification dominated the nitrogen cycle, with nirS-type denitrifiers being overwhelmingly prevalent; genes associated with nitrate reduction (napA, narG) were also significantly more abundant in the south. Sediment total phosphorus (TP) was significantly correlated with genes involved in carbon fixation, methane production, nitrogen fixation and sulfur metabolism (Mantel test, p < 0.05), suggesting that TP is a key driver of microbial nutrient cycling in Erhai sediment. Furthermore, co-abundance of these functional genes was observed across all sites (Spearman correlation, p < 0.05), which in turn implies potential coupling of the major elemental cycles. Accordingly, the differentiation of the carbon, nitrogen, phosphorus and sulfur cycling genes and metabolic potential in the different sectors reveals heterogeneous microbial regulation of Erhai’s endogenous nutrient cycling. It highlights precision and differentiated management as a key for large lake restoration. Full article

Long-term fertilization profoundly influences soil biochemical processes and microbial functionality, yet the coupling mechanisms between soil enzyme activities and functional genes in nutrient cycling remain unclear. This study investigated the effects of different fertilization regimes—nitrogen alone (N), nitrogen–phosphorus–potassium fertilizer (NPK), organic fertilizer (M), and combined organic–inorganic fertilizer (MNPK)—on soil properties, enzyme activities, N- and P-cycling-related functional gene abundances, and faba bean (Vicia faba L.) yield in a 45-year ongoing field experiment in subtropical eastern China. Results showed that long-term fertilization significantly affected soil pH, electrical conductivity, nutrient contents, and crop yield. Organic fertilizer addition (M and MNPK) markedly improved soil organic matter, total and available nutrients, and enhanced faba bean grain yield by 75.07–92.79% compared with NPK, whereas NPK had limited benefits on total and available soil nutrients compared with N-only application. Soil enzyme activity analysis revealed that the MNPK treatment achieved the highest urease and neutral protease activities, while acid and alkaline protease activities responded inconsistently. Phosphorus-related enzymes (acid, neutral, and alkaline phosphatases) were strongly stimulated by organic inputs, reflecting enhanced P mineralization potential. Functional gene analysis showed that N-fixation and assimilatory nitrate reduction genes increased under M and MNPK, while N assimilation, N mineralization, anammox, nitrification, denitrification, and dissimilatory nitrate reduction genes were enriched under N treatment. Phosphate uptake and transport genes were upregulated under NPK, M, and MNPK, whereas inorganic P solubilization genes were highest under N. Significant positive correlations were observed among soil enzyme activities, nutrient contents, and faba bean yield, whereas acid and alkaline protease activities showed opposite trends. The relative abundances of N- and P-cycling functional genes exhibited distinct yet coordinated relationships with soil fertility indicators and enzyme activities. These findings provide mechanistic insights into the long-term regulation of soil–microbe interactions and nutrient cycling, offering a scientific basis for sustainable fertilization strategies in agroecosystems. Full article

Excessive nitrogen (N) fertilization in rice systems has caused soil degradation and reduced N use efficiency. Green manure, especially Astragalus sinicus (Chinese milk vetch), provides a sustainable alternative, but the microbial and functional gene mechanisms underlying its interaction with reduced N input remain unclear. In this study, a field experiment was conducted at Dingdian Village, Natong Town, Long’an County, Nanning City, Guangxi Province, China (107°51′21″ E, 23°00′41″ N) during the 2018–2019 rice growing seasons. Four treatments were established: conventional N fertilization (N100), 20% N reduction (N80), green manure plus full N (GMN100), and green manure plus 20% N reduction (GMN80). Soil physicochemical traits, microbial community composition, and carbon-cycling functional genes were analyzed using high-throughput sequencing and metagenomic profiling. Compared with N100, GMN80 significantly increased soil organic matter (by 21.3%), microbial biomass carbon (by 32.6%), and available phosphorus (by 17.8%). The Shannon index rose from 4.18 to 4.63, while Proteobacteria and Actinobacteria increased by 9.5% and 7.2%, respectively. Functional genes encoding glycoside hydrolases (GH5, GH9) and carbohydrate esterases (CE1, CE10) were enriched by 25–40%, with upregulation of carbon fixation (rbcL) and methane metabolism (mcrA) genes. Integrating A. sinicus with moderate N reduction improves soil fertility, stimulates microbial diversity, and enhances carbon turnover efficiency, offering a practical pathway toward sustainable low-carbon rice production. Full article

Efficient biological nitrogen fixation (BNF) is crucial for sustainable soybean productivity. Current strategies involve the use of Bradyrhizobium diazoefficiens and co-inoculation with plant growth-promoting bacteria like Azospirillum brasilense. To further optimize BNF and plant performance, we investigated the effect of co-inoculation with A. brasilense and B. diazoefficiens combined with the strategic application of the micronutrients Molybdenum (Mo), Cobalt (Co), and Nickel (Ni) on soybean grown under greenhouse conditions. We evaluated plant growth, photosynthetic parameters, accumulation of N, nitrate reductase activity, and nifH gene expression at the R1 reproductive stage. Our main finding was that the co-inoculation combined with the simultaneous application of Mo, Co, and Ni significantly maximized vegetative growth, photochemical efficiency, and BNF. Specifically, this triple supplementation increased nifH gene expression (0.22) compared to the inoculated control (0.003), leading to a substantial enhancement of photosynthetic parameters, including photosystem II (PSII) efficiency and net carbon assimilation (A). For example, the total dry mass was 14.36 g in the Mo + Co + Ni + AZO + BRADY combination and 6.50 g in the non-inoculated and non-micronutrient-treated plants. The total N content was also higher in the plants treated with Mo + Co + Ni + AZO + BRADY (73.20 g kg⁻¹). Crucially, the data also demonstrated that excessive levels of Co impaired the symbiosis, underscoring the necessity of precise dose management. These results confirm the strong synergistic potential of combining microbial co-inoculation with targeted mineral nutrition as a high-impact, sustainable strategy for boosting soybean productivity. Full article

Rice sheath blight caused by Rhizoctonia solani is a devastating global rice disease. This study aimed to isolate biocontrol bacteria from the medicinal plant Bletilla striata for managing the disease. Strain A1 demonstrated the strongest antagonistic activity, with a 91.92% inhibition rate against R. solani in vitro. It also exhibited a broad antifungal spectrum against ten plant pathogenic fungi. Morphological and molecular (16S rRNA and recA genes) analysis identified strain A1 as Pseudomonas koreensis. In detached leaf assays, lesion length was significantly reduced. Pot and field trials showed control efficacies of 65.54% and 72.53%, respectively, comparable to the chemical agent Jinggangmycin. Strain A1 secreted extracellular enzymes (protease, β-1,3-glucanase), siderophores, and auxin (IAA), and possessed phosphate-solubilizing and nitrogen-fixing capabilities. The strain significantly enhanced the activities of key defense enzymes (POD, PAL, PPO, CAT, SOD) in rice. Furthermore, both its sterile culture filtrate and the corresponding crude ethyl acetate extract exhibited strong, direct suppression of R. solani growth. LC-MS analysis identified potential antifungal compounds, including Pseudomonic Acid, Artemisinin, and Tetradecane, in the extract. In conclusion, P. koreensis A1 is a promising biocontrol and plant growth-promoting candidate for sustainable management of rice sheath blight. Full article