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23 pages, 2733 KiB  
Article
Estimating Genetic Variability and Heritability of Morpho-Agronomic Traits of M5 Cowpea (Vigna unguiculata (L.) Walp) Mutant Lines
by Kelebonye Ramolekwa, Motlalepula Pholo-Tait, Travis Parker, Goitseone Malambane, Samodimo Ngwako and Lekgari Lekgari
Int. J. Mol. Sci. 2025, 26(15), 7543; https://doi.org/10.3390/ijms26157543 (registering DOI) - 5 Aug 2025
Abstract
Induced mutation plays an integral part in plant breeding as it introduces new variability among the population. A study was conducted in cowpeas [Vigna unguiculata (L.) Walp] to assess the yield divergence, heritability, genetic advance, and correlation among the M5 Tswana cowpea [...] Read more.
Induced mutation plays an integral part in plant breeding as it introduces new variability among the population. A study was conducted in cowpeas [Vigna unguiculata (L.) Walp] to assess the yield divergence, heritability, genetic advance, and correlation among the M5 Tswana cowpea mutants. The experiment utilized seven genotypes under rainfed and supplementary irrigation during the 2022/23 and 2023/24 cropping seasons. The mutant lines demonstrated significant variations in days to 50% emergence (DE) and days to 50% flowering (DF). Tswana emerged earlier (5–7 days) and flowered in 21–54 days across the two seasons, compared to some of the mutant lines. The yield and yield components varied among some mutant lines and the control. Most importantly, mutants outperformed the Tswana control for some of these traits, indicating potential for genetic improvement. An analysis of genetic parameters revealed minimal environmental influences on some of the observed traits (GH, PN, GY), while others showed little environmental impact. Variation in heritability (H2) and genetic advance (GA%) between the two seasons limited the contribution of genotypic effects in the expression of the studied traits. Correlation analysis revealed strong and significant positive associations between DE and GH, as well as between DF and PW. Most traits, except DF and PW, were positively correlated with grain yield (GY), although the correlations were not significantly different. Cluster analysis grouped the genotypes into four distinct clusters. Principal component analysis (PCA) revealed the superiority of mutant lines (Tswana-300Gy-214, Tswana-400Gy mutant lines, and Tswana-500Gy-31) in their association with improved GY, pod weight (PW), 100-seed weight (100-SW), and seed number per pod (SN/P). Interestingly, the Tswana control formed a separate cluster and diverged from the mutants in PCA, suggesting that induced mutagenesis effectively targeted genes controlling the traits considered in this study. Full article
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20 pages, 4847 KiB  
Article
FCA-STNet: Spatiotemporal Growth Prediction and Phenotype Extraction from Image Sequences for Cotton Seedlings
by Yiping Wan, Bo Han, Pengyu Chu, Qiang Guo and Jingjing Zhang
Plants 2025, 14(15), 2394; https://doi.org/10.3390/plants14152394 - 2 Aug 2025
Viewed by 198
Abstract
To address the limitations of the existing cotton seedling growth prediction methods in field environments, specifically, poor representation of spatiotemporal features and low visual fidelity in texture rendering, this paper proposes an algorithm for the prediction of cotton seedling growth from images based [...] Read more.
To address the limitations of the existing cotton seedling growth prediction methods in field environments, specifically, poor representation of spatiotemporal features and low visual fidelity in texture rendering, this paper proposes an algorithm for the prediction of cotton seedling growth from images based on FCA-STNet. The model leverages historical sequences of cotton seedling RGB images to generate an image of the predicted growth at time t + 1 and extracts 37 phenotypic traits from the predicted image. A novel STNet structure is designed to enhance the representation of spatiotemporal dependencies, while an Adaptive Fine-Grained Channel Attention (FCA) module is integrated to capture both global and local feature information. This attention mechanism focuses on individual cotton plants and their textural characteristics, effectively reducing the interference from common field-related challenges such as insufficient lighting, leaf fluttering, and wind disturbances. The experimental results demonstrate that the predicted images achieved an MSE of 0.0086, MAE of 0.0321, SSIM of 0.8339, and PSNR of 20.7011 on the test set, representing improvements of 2.27%, 0.31%, 4.73%, and 11.20%, respectively, over the baseline STNet. The method outperforms several mainstream spatiotemporal prediction models. Furthermore, the majority of the predicted phenotypic traits exhibited correlations with actual measurements with coefficients above 0.8, indicating high prediction accuracy. The proposed FCA-STNet model enables visually realistic prediction of cotton seedling growth in open-field conditions, offering a new perspective for research in growth prediction. Full article
(This article belongs to the Special Issue Advances in Artificial Intelligence for Plant Research)
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18 pages, 4185 KiB  
Article
Morphology-Based Evaluation of Pollen Fertility and Storage Characteristics in Male Actinidia arguta Germplasm
by Hongyan Qin, Shutian Fan, Ying Zhao, Peilei Xu, Xiuling Chen, Jiaqi Li, Yiming Yang, Yanli Wang, Yue Wang, Changyu Li, Yingxue Liu, Baoxiang Zhang and Wenpeng Lu
Plants 2025, 14(15), 2366; https://doi.org/10.3390/plants14152366 - 1 Aug 2025
Viewed by 177
Abstract
Actinidia arguta is a dioecious plant, and the selection of superior male germplasm is crucial for ensuring effective pollination of female cultivars, maximizing their economic traits, and achieving high-quality yields. This study evaluated 30 male germplasms for pollen quantity, germination capacity, storage characteristics, [...] Read more.
Actinidia arguta is a dioecious plant, and the selection of superior male germplasm is crucial for ensuring effective pollination of female cultivars, maximizing their economic traits, and achieving high-quality yields. This study evaluated 30 male germplasms for pollen quantity, germination capacity, storage characteristics, and ultrastructural features. Results revealed significant variation in pollen germination rates (1.56–96.57%) among germplasms, with ‘Lvwang’, ‘TL20083’, and ‘TG06023’ performing best (all >90% germination). The storage characteristics study demonstrated that −80 °C is the optimal temperature for long-term pollen storage in A. arguta. Significant variations were observed in storage tolerance among different germplasms. Among them, Lvwang exhibited the best performance, maintaining a germination rate of 97.40% after 12 months of storage at −80 °C with no significant difference from the initial value, followed by TT07063. Pollen morphology was closely correlated with fertility. High-fertility pollen grains typically exhibited standard prolate or ultra-prolate shapes, featuring a tri-lobed polar view and an elliptical equatorial view, with neat germination furrows and clean surfaces. In contrast, low-fertility pollen grains frequently appeared shrunken and deformed, with widened germination furrows and visible exudates. Based on these findings, the following recommendations are proposed: ① Prioritize the use of germplasms with pollen germination rates >80% as pollinizers; ② Establish a rapid screening system based on pollen morphological characteristics. This study provides important scientific basis for both male germplasm selection and efficient cultivation practices in A. arguta (kiwiberry). Full article
(This article belongs to the Section Plant Development and Morphogenesis)
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17 pages, 3308 KiB  
Article
Exogenous Melatonin Application Improves Shade Tolerance and Growth Performance of Soybean Under Maize–Soybean Intercropping Systems
by Dan Jia, Ziqing Meng, Shiqiang Hu, Jamal Nasar, Zeqiang Shao, Xiuzhi Zhang, Bakht Amin, Muhammad Arif and Harun Gitari
Plants 2025, 14(15), 2359; https://doi.org/10.3390/plants14152359 - 1 Aug 2025
Viewed by 210
Abstract
Maize–soybean intercropping is widely practised to improve land use efficiency, but shading from maize often limits soybean growth and productivity. Melatonin, a plant signaling molecule with antioxidant and growth-regulating properties, has shown potential in mitigating various abiotic stresses, including low light. This study [...] Read more.
Maize–soybean intercropping is widely practised to improve land use efficiency, but shading from maize often limits soybean growth and productivity. Melatonin, a plant signaling molecule with antioxidant and growth-regulating properties, has shown potential in mitigating various abiotic stresses, including low light. This study investigated the efficacy of applying foliar melatonin (MT) to enhance shade tolerance and yield performance of soybean under intercropping. Four melatonin concentrations (0, 50, 100, and 150 µM) were applied to soybean grown under mono- and intercropping systems. The results showed that intercropping significantly reduced growth, photosynthetic activity, and yield-related traits. However, the MT application, particularly at 100 µM (MT100), effectively mitigated these declines. MT100 improved plant height (by up to 32%), leaf area (8%), internode length (up to 41%), grain yield (32%), and biomass dry matter (30%) compared to untreated intercropped plants. It also enhanced SPAD chlorophyll values, photosynthetic rate, stomatal conductance, chlorophyll fluorescence parameters such as Photosystem II efficiency (ɸPSII), maximum PSII quantum yield (Fv/Fm), photochemical quenching (qp), electron transport rate (ETR), Rubisco activity, and soluble protein content. These findings suggest that foliar application of melatonin, especially at 100 µM, can improve shade resilience in soybean by enhancing physiological and biochemical performance, offering a practical strategy for optimizing productivity in intercropping systems. Full article
(This article belongs to the Special Issue The Physiology of Abiotic Stress in Plants)
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18 pages, 2037 KiB  
Article
A Study on the Correlation Between Stress Tolerance Traits and Yield in Various Barley (Hordeum vulgare L.) Genotypes Under Low Nitrogen and Phosphorus Stress
by Xiaoning Liu, Bingqin Teng, Feng Zhao and Qijun Bao
Agronomy 2025, 15(8), 1846; https://doi.org/10.3390/agronomy15081846 - 30 Jul 2025
Viewed by 131
Abstract
This study investigates the effects of low nitrogen (N) and phosphorus (P) stress on the growth and yield of nine barley (Hordeum vulgare L.) genotypes (1267-2, 1749-1, 1149-3, 2017Y-2, 2017Y-16, 2017Y-17, 2017Y-18, 2017Y-19, and XBZ17-1-61), all of which are spring two-rowed hulled [...] Read more.
This study investigates the effects of low nitrogen (N) and phosphorus (P) stress on the growth and yield of nine barley (Hordeum vulgare L.) genotypes (1267-2, 1749-1, 1149-3, 2017Y-2, 2017Y-16, 2017Y-17, 2017Y-18, 2017Y-19, and XBZ17-1-61), all of which are spring two-rowed hulled barley types from the Economic Crops and Beer Material Institute, Gansu Academy of Agricultural Sciences. Data were collected over two consecutive growing seasons (2021–2022) at Huangyang Town (altitude 1766 m, irrigated desert soil with 1.71% organic matter, 1.00 g·kg−1 total N, 0.87 g·kg−1 total P in 0–20 cm plough layer) to elucidate the correlation between stress tolerance traits and yield performance. Field experiments were conducted under two treatment conditions: no fertilization (NP0) and normal fertilization (180 kg·hm−2 N and P, NP180). Growth indicators (plant height, spike length, spikelets per unit area, etc.) and quality indicators (proportion of plump/shrunken grains, 1000-grain weight, protein, starch content) were measured, and data were analyzed using correlation analysis, principal component analysis, and structural equation modeling. The results revealed that low N and P stress significantly impacted quality indicators, such as the proportion of plump and shrunken grains, while having a minimal effect on growth indicators like plant height and spike length. Notably, the number of spikelets per unit area emerged as a critical factor positively influencing yield. Among the tested genotypes, 1749-1, 1267-2, 1149-3, 2017Y-16, 2017Y-18, 2017Y-19, and XBZ17-1-61 exhibited superior yield performance under low N and P stress conditions, indicating their potential for breeding programs focused on stress resilience. Included among these, the 1749-1 line showed the best overall performance and consistent results across both years. Full article
(This article belongs to the Section Crop Breeding and Genetics)
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18 pages, 932 KiB  
Article
Agronomic Performance of Newly Developed Elite Cowpea Mutant Lines in Eswatini
by Kwazi A. K. Mkhonta, Hussein Shimelis, Seltene Abady and Asande Ngidi
Agriculture 2025, 15(15), 1631; https://doi.org/10.3390/agriculture15151631 - 27 Jul 2025
Viewed by 354
Abstract
Cowpea (Vigna unguiculata [L.] Walp) is a vital food security crop in sub-Saharan Africa, including Eswatini. The productivity of the crop is low (<600 kg/ha) in the country due to a lack of improved, locally adapted, and farmer-preferred varieties with biotic and [...] Read more.
Cowpea (Vigna unguiculata [L.] Walp) is a vital food security crop in sub-Saharan Africa, including Eswatini. The productivity of the crop is low (<600 kg/ha) in the country due to a lack of improved, locally adapted, and farmer-preferred varieties with biotic and abiotic stress tolerance. The objective of the study was to assess the agronomic performance of newly developed elite cowpea mutants to select best-yielding and adapted pure lines for production and genetic improvement in Eswatini. A total of 30 cowpea genotypes, including 24 newly developed advanced mutant lines, their 3 founder parents and 3 local checks, were profiled for major agronomic traits in two selected sites (Lowveld Experiment and Malkerns Research Stations) using a 6 × 5 alpha lattice design with three replications. A combined analysis of variance revealed that the genotype x location interaction effects were significant (p < 0.05) for germination percentage (DG %), days to flowering (DTF), days to maturity (DMT), number of pods per plant (NPP), pod length (PDL), number of seeds per pod (NSP), hundred seed weight (HSW), and grain yield (GYD). Elite mutant genotypes, including NKL9P7, BRR4P11, SHR9P5, and NKL9P7-2 exhibited higher grain yields at 3158.8 kg/ha, 2651.6 kg/ha, 2627.5 kg/ha, and 2255.8 kg/ha in that order. The highest-yielding mutant, NKL9P7, produced 70%, 61%, and 54% more grain yield than the check varieties Mtilane, Black Eye, and Accession 792, respectively. Furthermore, the selected genotypes displayed promising yield components such as better PDL (varying from 13.1 to 26.3 cm), NPP (15.9 to 26.8), and NSP (9.8 to 16.2). Grain yield had significant positive correlations (p < 0.05) with DG %, NSP, and NPP. The principal component analysis (PCA) revealed that 81.5% of the total genotypic variation was attributable to the assessed quantitative traits. Principal component (PC) 1 accounted for 48.6%, while PC 2 and PC 3 contributed 18.9% and 14% of the overall variation, respectively. Key traits correlated with PC1 were NPP with a loading score of 0.91, NSP (0.83), PDL (0.73), GYD (0.68), HSW (0.58), DMT (−0.60), and DTF (−0.43) in a desirable direction. In conclusion, genotypes NKL9P7, BRR4P11, SHR9P5, NKL9P7-2, Bira, SHR3P4, and SHR2P7 were identified as complementary parents with relatively best yields and local adaptation, making them ideal selections for direct production or breeding. The following traits, NPP, NSP, PDL, GYD, and HSW, offered unique opportunities for genotype selection in the cowpea breeding program in Eswatini. Full article
(This article belongs to the Section Crop Genetics, Genomics and Breeding)
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19 pages, 1940 KiB  
Article
Linkages Between Sorghum bicolor Root System Architectural Traits and Grain Yield Performance Under Combined Drought and Heat Stress Conditions
by Alec Magaisa, Elizabeth Ngadze, Tshifhiwa P. Mamphogoro, Martin P. Moyo and Casper N. Kamutando
Agronomy 2025, 15(8), 1815; https://doi.org/10.3390/agronomy15081815 - 26 Jul 2025
Viewed by 281
Abstract
Breeding programs often overlook the use of root traits. Therefore, we investigated the relevance of sorghum root traits in explaining its adaptation to combined drought and heat stress (CDHS). Six (i.e., three pre-release lines + three checks) sorghum genotypes were established at two [...] Read more.
Breeding programs often overlook the use of root traits. Therefore, we investigated the relevance of sorghum root traits in explaining its adaptation to combined drought and heat stress (CDHS). Six (i.e., three pre-release lines + three checks) sorghum genotypes were established at two low-altitude (i.e., <600 masl) locations with a long-term history of averagely very high temperatures in the beginning of the summer season, under two management (i.e., CDHS and well-watered (WW)) regimes. At each location, the genotypes were laid out in the field using a randomized complete block design (RCBD) replicated two times. Root trait data, namely root diameter (RD), number of roots (NR), number of root tips (NRT), total root length (TRL), root depth (RDP), root width (RW), width–depth ratio (WDR), root network area (RNA), root solidity (RS), lower root area (LRA), root perimeter (RP), root volume (RV), surface area (SA), root holes (RH) and root angle (RA) were gathered using the RhizoVision Explorer software during the pre- and post-flowering stage of growth. RSA traits differentially showed significant (p < 0.05) correlations with grain yield (GY) at pre- and post-flowering growth stages and under CDHS and WW conditions also revealing genotypic variation estimates exceeding 50% for all the traits. Regression models varied between pre-flowering (p = 0.013, R2 = 47.15%, R2 Predicted = 29.32%) and post-flowering (p = 0.000, R2 = 85.64%, R2 Predicted = 73.30%) growth stages, indicating post-flowering as the optimal stage to relate root traits to yield performance. RD contributed most to the regression model at post-flowering, explaining 51.79% of the 85.64% total variation. The Smith–Hazel index identified ICSV111IN and ASAREACA12-3-1 as superior pre-release lines, suitable for commercialization as new varieties. The study demonstrated that root traits (in particular, RD, RW, and RP) are linked to crop performance under CDHS conditions and should be incorporated in breeding programs. This approach may accelerate genetic gains not only in sorghum breeding programs, but for other crops, while offering a nature-based breeding strategy for stress adaptation in crops. Full article
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16 pages, 1105 KiB  
Article
Ozone Stress During Rice Growth Impedes Grain-Filling Capacity of Inferior Spikelets but Not That of Superior Spikelets
by Shaowu Hu, Hairong Mu, Yunxia Wang, Liquan Jing, Yulong Wang, Jianye Huang and Lianxin Yang
Agronomy 2025, 15(8), 1809; https://doi.org/10.3390/agronomy15081809 - 26 Jul 2025
Viewed by 202
Abstract
Ozone pollution decreases rice yield and quality in general, but how ozone stress changes grain-filling capacity is unclear. A chamber experiment was conducted to compare the effects of ozone exposure during the rice growth season on the grain-filling capacity and quality of spikelets [...] Read more.
Ozone pollution decreases rice yield and quality in general, but how ozone stress changes grain-filling capacity is unclear. A chamber experiment was conducted to compare the effects of ozone exposure during the rice growth season on the grain-filling capacity and quality of spikelets located on the upper primary rachis (superior spikelets, SS) and the lower secondary rachis (inferior spikelets, IS). Ozone stress significantly decreased filled grain percentage by 41.4% and grain mass by 10.2% in IS, but had little effect on grain-filling capacity in SS. Consistent with the reduction in grain mass, ozone stress decreased grain volume, mainly due to reduced grain thickness, and IS was reduced more than SS. After removing the hull, brown rice obtained from ozone treatment exhibited higher proportions of immature and abnormal kernels, resulting in a substantially lower proportion of perfect kernels. Under ozone stress, the proportion of perfect kernels was only one-third in IS, compared with two-thirds in SS. Ozone stress affected the pasting properties of brown rice for both SS and IS, as shown by the decreased amylose content, and the increased maximum viscosity, minimum viscosity, final viscosity, setback, and peak time of the rapid visco analyzer profile. Out of fourteen traits related to nutritional quality of brown rice, only five showed significant increases under ozone stress, and they were the concentrations of albumin, prolamin, sulfur, copper, and manganese. The differential ozone responses between SS and IS were rather small for rice pasting properties and chemical compositions as shown by very few significant interactions between ozone and grain position. It is concluded that ozone stress during plant growth imposed more adverse effects on IS than SS in terms of grain-filling capacity and appearance quality, suggesting an enlarged asynchronous grain-filling pattern in rice panicles under ozone pollution. Strategies to improve the grain-filling capacity of IS are needed to mitigate ozone-induced damage to rice production. Full article
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28 pages, 2549 KiB  
Article
A 25K Wheat SNP Array Revealed the Genetic Diversity and Population Structure of Durum Wheat (Triticum turgidum subsp. durum) Landraces and Cultivars
by Lalise Ararsa, Behailu Mulugeta, Endashaw Bekele, Negash Geleta, Kibrom B. Abreha and Mulatu Geleta
Int. J. Mol. Sci. 2025, 26(15), 7220; https://doi.org/10.3390/ijms26157220 - 25 Jul 2025
Viewed by 1154
Abstract
Durum wheat, the world’s second most cultivated wheat species, is a staple crop, critical for global food security, including in Ethiopia where it serves as a center of diversity. However, climate change and genetic erosion threaten its genetic resources, necessitating genomic studies to [...] Read more.
Durum wheat, the world’s second most cultivated wheat species, is a staple crop, critical for global food security, including in Ethiopia where it serves as a center of diversity. However, climate change and genetic erosion threaten its genetic resources, necessitating genomic studies to support conservation and breeding efforts. This study characterized genome-wide diversity, population structure (STRUCTURE, principal coordinate analysis (PCoA), neighbor-joining trees, analysis of molecular variance (AMOVA)), and selection signatures (FST, Hardy–Weinberg deviations) in Ethiopian durum wheat by analyzing 376 genotypes (148 accessions) using an Illumina Infinium 25K single nucleotide polymorphism (SNP) array. A set of 7842 high-quality SNPs enabled the assessments, comparing landraces with cultivars and breeding populations. Results revealed moderate genetic diversity (mean polymorphism information content (PIC) = 0.17; gene diversity = 0.20) and identified 26 loci under selection, associated with key traits like grain yield, stress tolerance, and disease resistance. AMOVA revealed 80.1% variation among accessions, with no significant differentiation by altitude, region, or spike density. Landraces formed distinct clusters, harboring unique alleles, while admixture suggested gene flow via informal seed exchange. The findings highlight Ethiopia’s rich durum wheat diversity, emphasizing landraces as reservoirs of adaptive alleles for breeding. This study provides genomic insights to guide conservation and the development of climate-resilient cultivars, supporting sustainable wheat production globally. Full article
(This article belongs to the Special Issue Latest Research on Plant Genomics and Genome Editing, 2nd Edition)
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17 pages, 3667 KiB  
Article
Improving the Recognition of Bamboo Color and Spots Using a Novel YOLO Model
by Yunlong Zhang, Tangjie Nie, Qingping Zeng, Lijie Chen, Wei Liu, Wei Zhang and Long Tong
Plants 2025, 14(15), 2287; https://doi.org/10.3390/plants14152287 - 24 Jul 2025
Viewed by 262
Abstract
The sheaths of bamboo shoots, characterized by distinct colors and spotting patterns, are key phenotypic markers influencing species classification, market value, and genetic studies. This study introduces YOLOv8-BS, a deep learning model optimized for detecting these traits in Chimonobambusa utilis using a dataset [...] Read more.
The sheaths of bamboo shoots, characterized by distinct colors and spotting patterns, are key phenotypic markers influencing species classification, market value, and genetic studies. This study introduces YOLOv8-BS, a deep learning model optimized for detecting these traits in Chimonobambusa utilis using a dataset from Jinfo Mountain, China. Enhanced by data augmentation techniques, including translation, flipping, and contrast adjustment, YOLOv8-BS outperformed benchmark models (YOLOv7, YOLOv5, YOLOX, and Faster R-CNN) in color and spot detection. For color detection, it achieved a precision of 85.9%, a recall of 83.4%, an F1-score of 84.6%, and an average precision (AP) of 86.8%. For spot detection, it recorded a precision of 90.1%, a recall of 92.5%, an F1-score of 91.1%, and an AP of 96.1%. These results demonstrate superior accuracy and robustness, enabling precise phenotypic analysis for bamboo germplasm evaluation and genetic diversity studies. YOLOv8-BS supports precision agriculture by providing a scalable tool for sustainable bamboo-based industries. Future improvements could enhance model adaptability for fine-grained varietal differences and real-time applications. Full article
(This article belongs to the Special Issue Advances in Artificial Intelligence for Plant Research)
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20 pages, 2613 KiB  
Review
The Genetic Basis of Wheat Spike Architecture
by Zhen Ji, Xin Liu, Fei Yan, Shouqing Wu and Yanfang Du
Agriculture 2025, 15(15), 1575; https://doi.org/10.3390/agriculture15151575 - 22 Jul 2025
Viewed by 387
Abstract
Wheat is one of the three major staple crops globally. The wheat spike serves as the primary structure bearing wheat grains. Spike architectures of wheat have a direct impact on the number of grains per spike, and thus the grain yield per spike. [...] Read more.
Wheat is one of the three major staple crops globally. The wheat spike serves as the primary structure bearing wheat grains. Spike architectures of wheat have a direct impact on the number of grains per spike, and thus the grain yield per spike. The development of wheat spike morphology is conserved to some extent in cereal crops, yet also exhibits differences, being strictly regulated by photoperiod and temperature. This paper compiles QTLs and genes related to wheat spike traits that have been published over the past two decades, summarizes the photoperiod and vernalization pathways influencing the transition from vegetative to reproductive growth, and organizes the key regulatory networks controlling spikelet and floret development. Additionally, it anticipates advancements in wheat gene cloning methods, challenges in optimizing wheat spike architecture for high yield and future directions in wheat spike trait research. Full article
(This article belongs to the Section Crop Genetics, Genomics and Breeding)
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26 pages, 17214 KiB  
Article
Polyploid Induction Enhances Secondary Metabolite Biosynthesis in Clausena lansium: Morphological and Metabolomic Insights
by Yu Ding, Liangfang Wu, Hongyao Wei, Zhichun Zhang, Jietang Zhao, Guibing Hu, Yonghua Qin and Zhike Zhang
Agriculture 2025, 15(14), 1566; https://doi.org/10.3390/agriculture15141566 - 21 Jul 2025
Viewed by 394
Abstract
Polyploidy in plants can enhance stress resistance and secondary metabolite production, offering potential benefits for Clausena lansium (L.) Skeel, a medicinally valuable species. However, systematic studies of polyploidy-induced morphological, anatomical, and metabolic changes in this species are lacking. This study aimed to induce [...] Read more.
Polyploidy in plants can enhance stress resistance and secondary metabolite production, offering potential benefits for Clausena lansium (L.) Skeel, a medicinally valuable species. However, systematic studies of polyploidy-induced morphological, anatomical, and metabolic changes in this species are lacking. This study aimed to induce and characterize polyploid C. lansium lines, assess ploidy-dependent variations, and evaluate their impact on bioactive metabolite accumulation. Three cultivars were hybridized, treated with colchicine, and bred, yielding 13 stable polyploid lines confirmed by flow cytometry and chromosome counting. The polyploids exhibited distinct traits, including larger pollen grains, altered leaf margins, increased leaflet numbers, enlarged guard cells with reduced stomatal density, and thicker leaf tissues. Metabolomic analysis revealed that tetraploids accumulated significantly higher levels of flavonoids, alkaloids, and phenolic acids compared to diploids, while triploids showed moderate increases. These findings demonstrate that polyploidization, particularly tetraploidy, enhances C. lansium’s medicinal potential by boosting pharmacologically active compounds. The study expands germplasm resources and supports the development of high-quality cultivars for pharmaceutical applications. Full article
(This article belongs to the Special Issue Fruit Germplasm Resource Conservation and Breeding)
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15 pages, 1273 KiB  
Article
Screening of Substrates and Optimization of Formulations for Exogenous Nutrient Bags of Morchella sextelata (Black Morel)
by Qi Yan, Weidong Zhang, Qi Wang, Tonghui Yang, Peng Wang, Ya Yu, Xiao Tan, Xueping Kang and Jiawei Wen
Horticulturae 2025, 11(7), 863; https://doi.org/10.3390/horticulturae11070863 - 21 Jul 2025
Viewed by 222
Abstract
In the artificial cultivation of Morchella sextelata (Black Morel), exogenous nutrient bags (ENBs) commonly employ wheat grains as the primary substrate raw material. However, this approach is costly and runs counter to the “non-grain” development direction advocated by the edible mushroom industry. Under [...] Read more.
In the artificial cultivation of Morchella sextelata (Black Morel), exogenous nutrient bags (ENBs) commonly employ wheat grains as the primary substrate raw material. However, this approach is costly and runs counter to the “non-grain” development direction advocated by the edible mushroom industry. Under controlled field conditions, twelve self-made formulations were set up and compared with a conventional market formulation to comprehensively analyze their impacts on the agronomic traits, yield, soil physicochemical properties, and economic benefits of M. sextelata fruiting bodies. The research findings indicate that the nutrient bag formulations have a significant effect on soil available nutrients. Specifically, the contents of alkali-hydrolysable nitrogen (AN) and available potassium (AK) exhibit a significantly negative correlation with M. sextelata yield (r = −0.60, p < 0.05; r = −0.72, p < 0.01, respectively). Among all the treatment groups, the KY1 formulation (comprising 30% wheat grains, 5% rice bran, 60% corncobs, 2% rice husks, 1% lime, and 1% gypsum) achieved the highest yield of 915.13 kg per 667 m2, which was 16.1% higher than that of the control group. The net economic benefit per unit area (667 m2) reached CNY 75,282.15, representing a 20.7% increase compared to the traditional wheat grains-based formulation. In conclusion, partially substituting wheat grains with rice bran in ENBs can not only reduce reliance on staple food resources but also enhance yield and economic efficiency. Due to the differences in cultivated strains and environmental conditions, the impact on morel yield is substantial; therefore, the results of this study need further validation through pilot trials. Full article
(This article belongs to the Section Medicinals, Herbs, and Specialty Crops)
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29 pages, 1814 KiB  
Article
Comparative Evaluation of Nutritional Quality and In Vitro Protein Digestibility in Selected Vegetable Soybean Genotypes at R6 and R8 Maturity
by Kanneboina Soujanya, T. Supraja, Aparna Kuna, Ramakrishnan M. Nair, S. Triveni and Kalenahalli Yogendra
Foods 2025, 14(14), 2549; https://doi.org/10.3390/foods14142549 - 21 Jul 2025
Viewed by 352
Abstract
The nutritional and quality characteristics of improved vegetable soybean genotypes were evaluated and compared with those of a grain-type soybean at the R6 (green maturity) and R8 (physiological maturity) stages. Significant variation (p < 0.05) was observed among genotypes for all measured [...] Read more.
The nutritional and quality characteristics of improved vegetable soybean genotypes were evaluated and compared with those of a grain-type soybean at the R6 (green maturity) and R8 (physiological maturity) stages. Significant variation (p < 0.05) was observed among genotypes for all measured traits. The overall quality parameters increased from the R6 (green maturity) stage to the R8 (physiological maturity) stage. Among the R6-stage genotypes, AVSB2001 recorded the highest contents of protein (15.30 ± 0.57 g/100 g), ash (2.31 ± 0.06 g/100 g), fat (8.05 ± 0.17 g/100 g), and calcium (140.78 ± 0.97 mg/100 g). The genotype Karune exhibited significantly higher levels of total sugars, non-reducing sugars, iron, and magnesium than the other entries. At the R8 stage, Swarna Vasundhara showed the highest protein content (39.23%), while AGS 447 recorded the highest values for fat, total sugars, in vitro protein digestibility, iron, copper, magnesium, and manganese. Notably, in vitro protein digestibility was lower across all genotypes at the R8 stage compared to the R6 stage. These findings suggest that selected vegetable soybean genotypes possess substantial nutritional value and can contribute meaningfully to meeting the recommended dietary allowance (RDA) across different age and occupational groups, underscoring this research’s potential public health impact. Based on stage-specific quality profiles, R6-stage genotypes may be better suited for fresh vegetables, whereas R8-stage genotypes can be utilized similarly to grain-type soybean for processing into products such as dhal, oil, flour, and other value-added foods. Full article
(This article belongs to the Section Food Nutrition)
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Article
Effects of Replacing Nitrogen Fertilizer with Organic Fertilizer on Soil Physicochemical Properties and Maize Yield in Yunnan’s Red Soil
by Zhao Liu, Wen Ao, Shenghang Wu, Qiheng Deng, Hao Ren, Qiang Li, Hao Li and Peng Zhang
Sustainability 2025, 17(14), 6634; https://doi.org/10.3390/su17146634 - 21 Jul 2025
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Abstract
Red soil regions commonly experience land degradation and low nutrient availability. Excessive fertilizer use in recent years has intensified these challenges, necessitating scientifically informed fertilization strategies to ensure agricultural sustainability. To identify optimal fertilization strategies for maize cultivation in Yunnan’s red soil regions, [...] Read more.
Red soil regions commonly experience land degradation and low nutrient availability. Excessive fertilizer use in recent years has intensified these challenges, necessitating scientifically informed fertilization strategies to ensure agricultural sustainability. To identify optimal fertilization strategies for maize cultivation in Yunnan’s red soil regions, this study conducted field experiments involving partial substitution of nitrogen fertilizer with organic manure to determine whether this approach improves soil health and boosts maize yield. Four treatments were compared in a randomized complete block design over one growing season: no fertilization (NF), soil testing and formula fertilization (STF), 15% organic fertilizer (swine manure) replacing nitrogen fertilizer (OF15), and 30% organic fertilizer replacing nitrogen fertilizer (OF30). The results indicated that substituting organic fertilizer for nitrogen fertilizer reduced soil acidification while increasing total phosphorus (TP) and available phosphorus (AP), thereby enhancing soil physicochemical properties. Maize grown under OF30 exhibited improved agronomic traits including plant height, stem diameter, ear height, and ear length. Additionally, the partial replacement of synthetic fertilizer with organic fertilizer notably increased maize yield and the weight of 100 grains, but there was no significant difference (p < 0.05) between OF15 and OF30. Moreover, the OF30 treatment generated the highest economic return of 25,981.73 CNY·ha−1. Correlation and principal component analyses revealed that substituting organic fertilizer for nitrogen fertilizer notably influenced total nitrogen (TN), total phosphorus (TP), available phosphorus (AP), and yield, with maize yield positively correlated with TP and AP content. This study presents evidence that replacing 30% of nitrogen fertilizer with organic fertilizer is a viable strategy to enhance soil health, maize productivity, and profitability in Yunnan’s red soil regions, providing a crucial scientific foundation to support sustainable agricultural development in the region. Full article
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