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37 pages, 1571 KB  
Review
Biological Detoxification of Mycotoxins by Lactic Acid Bacteria: Safeguarding Food from Fungal Contaminants
by Nazia Tabassum, Minji Kim, Tae-Hee Kim, Du-Min Jo, Won-Kyo Jung, Young-Mog Kim and Fazlurrahman Khan
Toxins 2026, 18(5), 236; https://doi.org/10.3390/toxins18050236 - 20 May 2026
Abstract
Mycotoxins are one of the biggest threats to global food safety, public health, and economic stability. More than 400 mycotoxins have been found to be secondary metabolites of toxigenic fungi, mostly from the genera Aspergillus, Fusarium, Penicillium, and Alternaria. [...] Read more.
Mycotoxins are one of the biggest threats to global food safety, public health, and economic stability. More than 400 mycotoxins have been found to be secondary metabolites of toxigenic fungi, mostly from the genera Aspergillus, Fusarium, Penicillium, and Alternaria. Aflatoxins (AFs), ochratoxin A (OTA), deoxynivalenol (DON), zearalenone (ZEA), fumonisins (FBs), patulin (PAT), and T-2/HT-2 toxins are the most dangerous to the health of people and animals. Conventional physical and chemical decontamination methods are only partially effective and can reduce food quality, leave toxic residues, or be too expensive for smallholder food systems. Recent studies have shown that the application of lactic acid bacteria (LAB) as a biological detoxification method is a safe, cost-effective, and environmentally friendly option, and has a long history of safe use in fermented foods. Selected strains or taxonomic units have been granted GRAS status by the FDA or QPS (Qualified Presumption of Safety) status by EFSA. However, their use for mycotoxin detoxification still requires strain-level safety assessment and efficacy validation in the intended food matrix. There are several mechanisms by which LAB employ to reduce the bioavailability of mycotoxins in food systems: (i) physical adsorption via cell wall components such as peptidoglycan, teichoic acids, and exopolysaccharides; (ii) enzymatic biotransformation that may produce non-toxic or less-toxic metabolites, though the safety of degradation products requires case-by-case toxicological assessment; (iii) antifungal metabolite production that inhibits fungal growth and mycotoxin biosynthesis; and (iv) competitive exclusion of toxigenic fungi during fermentation. This comprehensive review examines the existing evidence on the detoxification of major food mycotoxins by LAB, with an emphasis on mechanisms, strain-specific efficacy, food-matrix applications, and factors that affect detoxification efficacy. Discussion has also been made of translating in vitro findings to in vivo settings and food-scale applications, alongside regulatory frameworks, current challenges, and future research directions. The review also suggests ways to combine LAB with new technologies, such as encapsulation, genetic engineering, and fermentation optimization, to make food systems safer by synergistically controlling mycotoxins. Full article
29 pages, 845 KB  
Review
Near-Infrared Spectroscopy in Food Analysis: Applications, Chemometric Strategies, and Technological Advances
by Limin Dai, Dong Luo, Jun Zhang, Yuan Chen and Changwei Li
Foods 2026, 15(10), 1814; https://doi.org/10.3390/foods15101814 - 20 May 2026
Abstract
This paper presents a comprehensive review on near-infrared (NIR) spectroscopy applied in food analysis, systematically elaborating its core principles, widespread industrial applications, advanced chemometric strategies, and cutting-edge technological progress. NIR spectroscopy (760–2500 nm), characterized by rapid, non-destructive detection and minimal sample preparation, has [...] Read more.
This paper presents a comprehensive review on near-infrared (NIR) spectroscopy applied in food analysis, systematically elaborating its core principles, widespread industrial applications, advanced chemometric strategies, and cutting-edge technological progress. NIR spectroscopy (760–2500 nm), characterized by rapid, non-destructive detection and minimal sample preparation, has been widely implemented in quality evaluation and safety monitoring of grains, meat, fruits and vegetables, dairy, fermented products, tea, coffee, and other processed foods, realizing quantitative analysis of nutrients, freshness assessment, texture prediction, adulteration identification, origin tracing, and rapid preliminary screening of toxin/pesticide residues. A series of chemometric methods, including spectral preprocessing (SNV, MSC, S-G smoothing), feature extraction, and variable selection (CARS, PSO-CMW, ICPA), as well as linear/nonlinear modeling algorithms (PLS, SVM, BP-ANN, fuzzy clustering) significantly boost the accuracy and robustness of spectral analysis. Meanwhile, portable NIR devices and online monitoring systems promote on-site and real-time detection in food supply chains. Despite existing challenges such as calibration transfer, matrix interference, and model generalization, innovations like multimodal data fusion, deep learning integration, and intelligent algorithm optimization offer effective solutions. This review not only summarizes the latest research advances of NIR technology in the food field but also emphasizes its significant advantages as a rapid, non-destructive complementary tool to traditional destructive detection methods, providing theoretical support and technical reference for accelerating the industrial translation and standardized application of NIR spectroscopy, and ultimately safeguarding global food quality and safety. Full article
(This article belongs to the Section Food Analytical Methods)
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21 pages, 1862 KB  
Article
Nutritional Value and Food Safety Assessment of Single-Cell Protein Derived from Ralstonia eutropha for Food Applications
by Xiaoyan You, Le Zhang, Ling Chen, Hui Wang, Hong Zou, Zhiguang Zhu and Guoping Zhao
Foods 2026, 15(10), 1813; https://doi.org/10.3390/foods15101813 - 20 May 2026
Abstract
The growing global protein demand and environmental concerns from conventional animal agriculture have driven the exploration of sustainable alternative protein sources. Single-cell proteins (SCPs) from microbial fermentation offer a promising solution. This study comprehensively evaluated the nutritional value and safety profile of SCP [...] Read more.
The growing global protein demand and environmental concerns from conventional animal agriculture have driven the exploration of sustainable alternative protein sources. Single-cell proteins (SCPs) from microbial fermentation offer a promising solution. This study comprehensively evaluated the nutritional value and safety profile of SCP produced from Ralstonia eutropha H16 through integrated in vitro and in vivo assessments. Nutritional analyses revealed a high crude protein content of 71.87 ± 5.05 g/100 g dry weight, with total amino acids of 53.67 ± 1.05 g/100 g. The essential amino acid content was 24.38 ± 0.51 g/100 g, accounting for 45% of the total amino acids. An essential amino acid index (EAAI) of 1.46 ± 0.04 and an amino acid score (AAS) of 0.83 ± 0.06 confirmed its classification as a high-quality protein source according to FAO/WHO standards. In vivo rat feeding trials demonstrated an adjusted protein efficiency ratio (PER) of 1.81, exceeding common plant proteins such as wheat (0.8–1.1). True digestibility (TD) reached 85.73%, with a biological value (BV) of 49.37%, net protein utilization (NPU) of 42.33%, and protein digestibility-corrected amino acid score (PDCAAS) of 0.71. Comprehensive safety assessments included chemical contaminant screening, acute oral toxicity studies in rats and mice, in vitro chromosome aberration tests, and erythrocyte micronucleus tests. Heavy metals and aflatoxin B1 levels were below regulatory limits. Acute oral toxicity studies established LD50 values exceeding 10,000 mg/kg body weight in both rodent species, classifying this protein source as practically non-toxic. The 28-day sub-acute toxicity study showed no significant adverse effects at low doses (6.25% protein replacement). Both genotoxicity assays (mammalian cell chromosome aberration assay and mammalian erythrocyte micronucleus test) returned negative results. These findings establish R. eutropha H16-derived SCP as a safe, nutritious, and sustainable protein source with considerable potential for feed and food applications, contributing to global food security and environmental sustainability. Full article
(This article belongs to the Section Food Quality and Safety)
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27 pages, 1023 KB  
Review
Nutrients and Functional Components of Medicine and Food Homology Substances on Antidepressant Effects: A Mechanism-Oriented Review
by Yamin Zhang, Lei Wang, Chenxi Liu and Jingzhang Geng
Molecules 2026, 31(10), 1727; https://doi.org/10.3390/molecules31101727 - 19 May 2026
Abstract
Depression is one of the most common mental disorders in modern society, and it has become a serious threat to human health. The limitations of existing antidepressant drugs have prompted people to turn to the multi-target, low-toxic side effects of natural products. This [...] Read more.
Depression is one of the most common mental disorders in modern society, and it has become a serious threat to human health. The limitations of existing antidepressant drugs have prompted people to turn to the multi-target, low-toxic side effects of natural products. This article reviews the conventional nutrients (omega-3 fatty acids, folic acid, and mineral elements) and functional active ingredients (flavonoids, polysaccharides, saponins, and terpenoids) in medicinal and food homologous substances (MFHs). They show antidepressant potential by regulating neurotransmitters, improving hypothalamic–pituitary–adrenal (HPA) axis function, promoting neuroplasticity, inhibiting neuroinflammation, regulating ferroptosis, and interfering with the gut–brain axis. In addition, this paper discusses the application prospects of modern technologies such as microbial fermentation and nano-delivery in improving the bioavailability of MFHs and product development. In summary, MFHs have potential application value in dietary intervention and adjuvant therapies for depression; in the future, randomized controlled clinical trials should be strengthened, and multi-omics technology should be combined to promote the development of precision products so as to provide a new perspective for the development of new antidepressant drugs. Full article
(This article belongs to the Special Issue Bioactive Food Compounds and Their Health Benefits)
22 pages, 17577 KB  
Article
Valorization of Grape Seed By-Products by Lactiplantibacillus plantarum FBL002 Fermentation: Multi-Omics Insights into β-Glucosidase-Mediated Polyphenol Biotransformation and Antioxidant Enhancement
by Yuan Shi, Jianhua Cheng, Litao Hu, Jialiang Lin, Yan Wang, Hao Huang, Zihao Yu, Chunlu He, Wenjie Xu, Wuxia Chen, Yichen Fan, Weikang Cui, Yuan Ban, Shaonian Chang, Haiyang Ye and Haifeng Huang
Fermentation 2026, 12(5), 246; https://doi.org/10.3390/fermentation12050246 - 19 May 2026
Abstract
Grape seeds are a major by-product of grape processing and a rich source of polyphenolic compounds, yet their value remains underutilized. In this study, 12 lactic acid bacteria (LAB) strains were evaluated in a grape seed-based fermentation system to compare their tolerance, metabolic [...] Read more.
Grape seeds are a major by-product of grape processing and a rich source of polyphenolic compounds, yet their value remains underutilized. In this study, 12 lactic acid bacteria (LAB) strains were evaluated in a grape seed-based fermentation system to compare their tolerance, metabolic performance, and ability to promote polyphenol release. Among them, Lactiplantibacillus plantarum FBL002 showed the best overall performance. The strain maintained strong viability and metabolic activity at 5% grape seed concentration and released polyphenols more effectively than the other tested strains. The resulting fermentation broth also showed pronounced intracellular antioxidant activity. To clarify the basis of this phenotype, we further combined metabolomic, genomic, and transcriptomic analyses. Fermentation caused substantial shifts in phenolic metabolites, characterized by a decrease in glycosylated forms and an increase in more bioactive aglycones. Genome annotation revealed an enrichment of β-glucosidase-related genes in FBL002, and transcriptomic analysis showed that these genes were markedly upregulated during fermentation. This pattern was closely associated with the enhanced release of polyphenols. Together, these findings identify β-glucosidase as a key driver of grape seed polyphenol biotransformation by FBL002 and support the sustainable, high-value use of grape seeds in functional foods and cosmetic applications. Full article
(This article belongs to the Section Microbial Metabolism, Physiology & Genetics)
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19 pages, 8120 KB  
Review
Lactic Acid Bacteria Exopolysaccharides as Next-Generation Clean-Label Texturizers and Prebiotics in Dairy Systems
by Yang Qiu, Tongyi Wang, Qiao Yang, Xiaoxue Liu, Chen Song and Renpeng Du
Fermentation 2026, 12(5), 245; https://doi.org/10.3390/fermentation12050245 - 19 May 2026
Abstract
Exopolysaccharides (EPSs) produced by lactic acid bacteria (LAB) are natural high-molecular-weight polymers secreted extracellularly during growth. They possess unique rheological properties and emulsifying stability and may exhibit prebiotic-related functionalities. In food systems, EPSs exhibit multiple functional values. In recent years, driven by the [...] Read more.
Exopolysaccharides (EPSs) produced by lactic acid bacteria (LAB) are natural high-molecular-weight polymers secreted extracellularly during growth. They possess unique rheological properties and emulsifying stability and may exhibit prebiotic-related functionalities. In food systems, EPSs exhibit multiple functional values. In recent years, driven by the global “Clean Label” movement and increasing consumer demand for natural and healthy foods, EPSs, as safe and traceable natural food-grade prebiotics, have attracted extensive attention in the dairy industry. This review summarizes EPSs’ structure, properties, and mechanisms in dairy systems. It focuses on their functional effects and mechanisms in typical dairy products such as yogurt, cheese, and ice cream, and analyzes the technical bottlenecks limiting large-scale production, including low yield, high cost, and challenges in separation and purification. This review further outlines several promising research directions for EPS research. These include strain modification via synthetic biology strategies, fermentation optimization using high-throughput screening technologies, and targeted application based on structure–function relationships. It aims to provide systematic theoretical references and practical guidance for the efficient development and innovative application of EPSs in the food industry. Full article
(This article belongs to the Special Issue The Roles of Lactic Acid Bacteria in Food Fermentation)
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23 pages, 1054 KB  
Article
Red Grape Pomace as a Quality-Modulating Ingredient in Dairy Cattle Salamis
by Gabriele Busetta, Giuseppe Maniaci, Marcella Barbera, Cristina Giosuè, Simone Italia, Daniela Piazzese, Luca Settanni, Marco Alabiso and Raimondo Gaglio
Foods 2026, 15(10), 1792; https://doi.org/10.3390/foods15101792 - 19 May 2026
Viewed by 8
Abstract
This study investigated the effects of red grape pomace powder (GPP) on spontaneously fermented salamis produced from the meat of retired cows and young bulls of the Cinisara dairy breed. The use of GPP and meat from these animal categories was motivated by [...] Read more.
This study investigated the effects of red grape pomace powder (GPP) on spontaneously fermented salamis produced from the meat of retired cows and young bulls of the Cinisara dairy breed. The use of GPP and meat from these animal categories was motivated by the valorization of low-commercial-value agri-food resources and the enhancement of sustainable local production chains. Plate count analyses showed typical fermentation dynamics, with lactic acid bacteria (LAB), coagulase-negative staphylococci, and yeasts reaching approximately 7 log CFU/g, and confirmed the absence of major foodborne pathogens. Illumina sequencing further characterized the bacterial community, identifying Latilactobacillus as the dominant genus at the end of ripening, with relative abundance (RA) of up to 65% in GPP-enriched trials. Physicochemical analyses showed progressive changes during ripening, including weight loss, pH decrease, color development, and increased proteolysis. GPP supplementation contributed to the stabilization of a*, chroma, and hue values, while reducing lightness during ripening. Oxidative stability measurements showed that GPP derived polyphenols effectively limited oxidative reactions, especially secondary lipid oxidation. GPP also modulated the volatile profile by increasing ester formation and introducing plant-derived compounds. Sensory evaluation revealed higher color intensity and aroma in enriched salamis, along with higher bitterness and lower structural homogeneity, especially in those produced from retired cows. Consumer surveys conducted in two retail settings indicated strong interest in this innovation, with over 80% of respondents willing to pay a 10–20% price premium. Overall, GPP emerges as a promising functional ingredient for enhancing, diversifying, and valorizing fermented salamis produced from dairy cattle meat, supporting both product innovation and sustainability-oriented strategies. Full article
(This article belongs to the Section Meat)
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21 pages, 4873 KB  
Article
Cold-Adapted Uric Acid-Degrading Lacticaseibacillus paracasei NEFU-6 Application in Kimchi “Paocai
by Xiaoyu Wang, Binyu Cui, Xiaoqian Zhou, Wei Zhang, Aman Khan and Weidong Wang
Molecules 2026, 31(10), 1717; https://doi.org/10.3390/molecules31101717 - 18 May 2026
Viewed by 199
Abstract
The use of lactic acid bacteria for the management of hyperuricemia has attracted growing interest, whereas the specific emphasis on cold-adapted uric acid-degrading probiotics in the fermentation of traditional foods remains underexplored. In this study, Lacticaseibacillus paracasei NEFU-6 was isolated from Northeastern Chinese [...] Read more.
The use of lactic acid bacteria for the management of hyperuricemia has attracted growing interest, whereas the specific emphasis on cold-adapted uric acid-degrading probiotics in the fermentation of traditional foods remains underexplored. In this study, Lacticaseibacillus paracasei NEFU-6 was isolated from Northeastern Chinese Kimchi and efficiently degraded uric acid (UA) at a temperature relevant to food fermentation (15 °C) and under simulated physiological conditions (37 °C). The results showed that strain NEFU-6 degraded 25.48% of UA in 6 days at 15 °C, and 40.55% after 72 h at 37 °C in 0.84 g/L of uric acid. All probiotic and safety-related properties were evaluated at 37 °C to simulate human physiological conditions. In vitro probiotic characterization revealed that strain NEFU-6 exhibits non-hemolytic activity, strong free radical-scavenging capacity, significant surface hydrophobicity, and an auto-aggregation rate of 52.65% after 24 h. The strain NEFU-6 also demonstrated robust survival under simulated gastrointestinal conditions, with tolerance rates of 70.7% in 0.3% bile salts, 51.02% in gastric juice at pH 1.5, and 62.61% after 4 h of exposure to artificial intestinal fluid, indicating strong adaptability. Furthermore, the application of strain NEFU-6 in kimchi fermentation improved product quality, confirming its potential for the development of low-temperature functional foods. Full article
(This article belongs to the Special Issue 30th Anniversary of Molecules—Recent Advances in Food Chemistry)
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18 pages, 1290 KB  
Article
Valorization of Bread Waste Hydrolysates and Plant-Based Nitrogen Sources for Mycoprotein Production by Pleurotus salmoneostramineus
by Patchana Sawetchayanont, Natta Laohakunjita, Apiradee Uthairatanakij, Orrapun Selamassakulc, Kanok Ratanakanokchaia, Phenjun Mekvichitsaengc and Punchira Vongsawasdid
Foods 2026, 15(10), 1773; https://doi.org/10.3390/foods15101773 - 17 May 2026
Viewed by 166
Abstract
Mycoprotein production by Pleurotus salmoneostramineus was evaluated using the bread industry by-products wheat bran hydrolysate (WBH) and stale bread hydrolysate (SBH) as carbon sources, with mung bean protein isolate hydrolysate (MBH) as a nitrogen source, within a circular bioeconomy framework. Enzymatic hydrolysis effectively [...] Read more.
Mycoprotein production by Pleurotus salmoneostramineus was evaluated using the bread industry by-products wheat bran hydrolysate (WBH) and stale bread hydrolysate (SBH) as carbon sources, with mung bean protein isolate hydrolysate (MBH) as a nitrogen source, within a circular bioeconomy framework. Enzymatic hydrolysis effectively converted these food industry waste streams into fermentable substrates with complementary nutritional profiles: SBH provided the highest total sugar content (57.53 g/L), while MBH contributed the highest total nitrogen (3.58 g/L) and essential amino acid content (215.05 mg/100 mL). Of 11 WBH:SBH ratio formulations evaluated under static cultivation, WB4 (WBH:SBH 70:30; C/N 27.32:1) was identified as the optimal carbon source formulation, producing the highest biomass (3.46 g/L) and protein content (23.19 g/100 g) after 14 days. Subsequent nitrogen source optimization under dynamic cultivation (200 rpm, 5 days) showed that MBH supplementation at 5 g/L produced the highest biomass (16.59 g/L), protein content (66.71 g/100 g), and absolute protein production (11.07 g/L). The amino acid profile of mycoprotein produced under optimized conditions met or exceeded the FAO/WHO-recommended essential amino acid requirements for older children, adolescents, and adults; the essential amino acid content (354.72 mg/g protein) was comparable to soy protein isolate and exceeded that of wheat gluten. Mycelial morphology shifted from filamentous networks under static conditions to fragmented clump structures under dynamic cultivation with MBH supplementation. These findings indicate the feasibility of producing nutritionally complete mycoprotein from food industry waste streams, with potential applications in plant-based food formulations. Full article
(This article belongs to the Section Nutraceuticals, Functional Foods, and Novel Foods)
21 pages, 6415 KB  
Article
Screening and Characterization of Lactiplantibacillus plantarum WYP with Histamine-Degrading Activity: A Probiotic Candidate Assessed Based on Phenotyping Experiments and Whole-Genome Sequencing
by Yaping Wang, Haiqian Xu, Yanyan Huang, Langhong Wang, Mansheng Wang and Qinglin Sheng
Foods 2026, 15(10), 1763; https://doi.org/10.3390/foods15101763 - 16 May 2026
Viewed by 187
Abstract
This study isolated and characterized Lactiplantibacillus plantarum WYP from naturally fermented pineapple peel residues. The strain exhibited a potent in vitro histamine degradation rate of 78.63% and demonstrated multiple probiotic properties, including acid and bile salt tolerance, simulated gastrointestinal fluid resistance, antimicrobial activity [...] Read more.
This study isolated and characterized Lactiplantibacillus plantarum WYP from naturally fermented pineapple peel residues. The strain exhibited a potent in vitro histamine degradation rate of 78.63% and demonstrated multiple probiotic properties, including acid and bile salt tolerance, simulated gastrointestinal fluid resistance, antimicrobial activity against foodborne pathogens, and in vitro cholesterol-lowering ability. Whole-genome sequencing revealed a 3.34 Mb circular genome encoding 3200 genes. Genomic analysis elucidated a multidimensional “Prevention–Promotion–Utilization” (PPU) strategy for histamine regulation: prevention via the absence of histidine decarboxylase (hdc) genes; promotion of degradation via multicopper oxidase (e.g., cueO) and amine oxidase systems; and utilization through downstream aldehyde metabolism and redox homeostasis genes. Safety assessments confirmed the strain’s non-hemolytic nature, absence of harmful metabolite production, and no detectable risk of acquired antibiotic resistance gene transfer. The integration of phenotypic and genomic evidence positions LPWYP as a promising probiotic candidate for mitigating biogenic amines in fermented foods. Full article
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28 pages, 2113 KB  
Review
Bat-Inspired Longevity: Immune Damage Management and Nutritional Modulation for Healthy Aging
by Sunmin Park and James W. Daily
Int. J. Mol. Sci. 2026, 27(10), 4467; https://doi.org/10.3390/ijms27104467 - 16 May 2026
Viewed by 111
Abstract
The exceptional longevity of bats challenges classical theories of inflammaging and suggests an alternative that improved resilience in responding to pathogens and cellular damage can increase longevity. Accordingly, we have developed the Core Longevity State Vector (CLSV-6) to characterize an expanded explanation for [...] Read more.
The exceptional longevity of bats challenges classical theories of inflammaging and suggests an alternative that improved resilience in responding to pathogens and cellular damage can increase longevity. Accordingly, we have developed the Core Longevity State Vector (CLSV-6) to characterize an expanded explanation for inflammaging that can be predictive of successful aging and used to develop potential strategies for successful aging. Despite high metabolic rates and persistent viral exposure, many bat species have much longer lifespans than would be predicted for mammals of their size. The increased longevity of many bat species is achieved through damage tolerance, regulated inflammasome activity, constitutive basal antiviral defenses, enhanced autophagy–mitophagy, and efficient resolution of inflammation, rather than through heightened inflammatory immunity. The CLSV-6 is introduced as a multidimensional immunotype framework integrating six conserved mechanisms that link bat immunity to bat longevity and to human healthy aging: (1) damage tolerance, (2) autophagy–mitophagy, (3) proteostasis (management of degraded proteins), (4) basal immune readiness without activation, (5) inflammasome regulation, and (6) inflammatory resolution capacity. Together, these mechanisms enable a robust antiviral defense when needed without chronic inflammation. Notably, centenarians converge toward this bat-like configuration. Studies suggest that centenarians often preserve more functional NK cells, better macrophage regulation, and improved anti-inflammatory control, with both bats and humans exhibiting reduced activation of the NLRP3 inflammasome, resulting in greater immune resilience. Building on this framework, functional foods—including polyphenols, fermented foods, and herbal extracts—are proposed as practical strategies to shift human immunity toward bat-like, CLSV-6 immunotype by enhancing cellular quality control, regulating inflammasome activity, strengthening basal antiviral readiness, and supporting inflammatory resolution, thereby redirecting longevity strategies from immune stimulation toward damage containment and repair. This review reframes longevity as an emergent property of integrated immune damage management and provides a mechanistic roadmap for nutritional interventions to engineer healthier human aging inspired by bat immunity. Full article
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25 pages, 881 KB  
Review
Bioconversion of Lignocellulosic Agricultural Residues: Omics-Based Development of Microbial Biopreparations for Sustainable Waste Management
by Justyna Bartczyk, Anna Szosland-Fałtyn and Justyna Szulc
Sustainability 2026, 18(10), 4987; https://doi.org/10.3390/su18104987 - 15 May 2026
Viewed by 125
Abstract
The increasing volume of plant-based waste generated by the agri-food sector represents both an environmental challenge and an underexploited biotechnological resource. These wastes, rich in lignocellulosic compounds, constitute a natural habitat for specialized microorganisms. The aim of this article is to provide a [...] Read more.
The increasing volume of plant-based waste generated by the agri-food sector represents both an environmental challenge and an underexploited biotechnological resource. These wastes, rich in lignocellulosic compounds, constitute a natural habitat for specialized microorganisms. The aim of this article is to provide a critical review of the potential use of such wastes—specifically straw, pomace, and manure—in two complementary ways: (1) as a specific source for isolating new microbial strains with high biodegradation capacity and plant-growth-promoting potential, and (2) as a low-cost substrate for their propagation, e.g., in solid-state fermentation processes. This dual perspective represents a novel, integrative approach, as previous reviews typically address these aspects in isolation rather than considering their synergistic potential. The article discusses the relationship between the chemical composition of selected wastes (straw, pomace, manure) and the targeted selection of desirable microbiological traits. Particular emphasis is placed on advanced, integrated approaches for assessing microbial potential, combining phenotyping (zymography, activity assays), genomics (whole-genome sequencing—WGS, identification of CAZyme genes and biosynthetic gene clusters), and metabolomics (metabolite profiling, 3D MSI imaging). The limitations of individual methods are critically evaluated, and key research gaps are identified, including the need for in situ validation of omics-based findings and the development of stable microbial consortia with predictable performance under variable environmental conditions. These gaps are discussed in the broader context of circular bioeconomy and sustainable agriculture, highlighting the strategic relevance of integrating waste valorization with microbiome-based biotechnological innovations. Full article
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20 pages, 5334 KB  
Article
Coprophagy Couples Hindgut Fermentation with Multi-Site Microbial Organization in Brandt’s Vole
by Xin-Yi Lu, Xin-Qing Zhao, Sheng-Mei Yang, Wan-Hong Wei and Xin Dai
Animals 2026, 16(10), 1514; https://doi.org/10.3390/ani16101514 - 15 May 2026
Viewed by 265
Abstract
Coprophagy, the ingestion of feces, is widespread among vertebrates and plays an important role in hindgut-fermenting herbivores by facilitating nutrient recycling and maintaining gut microbial stability. However, most studies have focused on cecal or fecal microbiota, with limited attention to microbial communities at [...] Read more.
Coprophagy, the ingestion of feces, is widespread among vertebrates and plays an important role in hindgut-fermenting herbivores by facilitating nutrient recycling and maintaining gut microbial stability. However, most studies have focused on cecal or fecal microbiota, with limited attention to microbial communities at other body sites. Here, we used Brandt’s vole, a species exhibiting frequent coprophagic behavior, to examine how coprophagy prevention affects hindgut fermentation and microbial communities across multiple sites, including the tongue, lung, stomach, and cecum. Coprophagy prevention increased food intake but reduced body weight gain and significantly decreased cecal acetate, propionate, and butyrate concentrations. At the microbial level, coprophagy prevention increased the Simpson index of the tongue microbiota and induced modest compositional shifts in the tongue, lung, and stomach microbiota. In contrast, the cecal microbiota exhibited greater compositional and predicted functional changes. Notably, coprophagy prevention reduced the Bray–Curtis distance between tongue and cecal microbiota without altering the number of shared amplicon sequence variants. Together, these findings indicate that coprophagy not only promotes efficient nutrient recycling through hindgut fermentation but may also influence microbiota composition across behaviorally interconnected digestive niches. Full article
(This article belongs to the Section Animal Nutrition)
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14 pages, 1757 KB  
Article
Development of a High-Throughput Indirect Competitive Chemiluminescence Enzyme-Linked Immunoassay for the Rapid Detection of Bongkrekic Acid in Tremella Fungus and Rice Noodles
by Xingdong Yang, Chenchen Wang, Lihua Wu, Yutong Cao, Yinuo Zhu, Keshi Ma, Zhonghua Liu and Xiaofei Hu
Foods 2026, 15(10), 1749; https://doi.org/10.3390/foods15101749 - 15 May 2026
Viewed by 98
Abstract
Bongkrekic acid (BKA) is a potent respiratory toxin produced by Pseudomonas cocovenenans. This toxin is commonly found in spoiled fermented rice- and wheat-based products, snow fungus, and black fungus and can cause severe foodborne illness. The development of a rapid onsite detection [...] Read more.
Bongkrekic acid (BKA) is a potent respiratory toxin produced by Pseudomonas cocovenenans. This toxin is commonly found in spoiled fermented rice- and wheat-based products, snow fungus, and black fungus and can cause severe foodborne illness. The development of a rapid onsite detection method can effectively prevent food poisoning incidents and ensure food safety. In this study, a highly specific anti-BKA monoclonal antibody was prepared, the reaction conditions were optimized, and an indirect competitive chemiluminescent enzyme-linked immunoassay (ic-CLEIA) system was developed for high-throughput screening of BKA in food. The results showed that the ic-CLEIA had good linearity in the range of 7.3–106.6 pg/mL, a limit of detection of 4.7 pg/mL, a limit of quantification of 7.3 pg/mL, a half-maximal inhibition concentration of 28.2 pg/mL, a spike recovery of 86.6–94.1%, a coefficient of variation of less than 10%, and no cross-reactivity with structural analogs. There was no significant difference between the detection results obtained with ic-CLEIA and ultraperformance liquid chromatography–tandem mass spectrometry for the samples. This method provides reliable technical support for food safety monitoring, especially for grassroots laboratories and large-scale sample screening. Full article
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15 pages, 3523 KB  
Article
Impact of Tetragenococcus halophilus CICC 10286 Inoculation on the Fermentation Dynamics of Soybean Paste
by Jing Cai, Ling Zhang, Hao Zhou, Xingjiang Li and Shaotong Jiang
Foods 2026, 15(10), 1744; https://doi.org/10.3390/foods15101744 - 15 May 2026
Viewed by 207
Abstract
Fermented soybean paste, a traditional high-salt condiment, faces challenges in standardization and quality control due to its reliance on natural fermentation. This study systematically evaluated the effects of a defined starter culture, Tetragenococcus halophilus CICC 10286, on soybean paste fermentation by comparing natural [...] Read more.
Fermented soybean paste, a traditional high-salt condiment, faces challenges in standardization and quality control due to its reliance on natural fermentation. This study systematically evaluated the effects of a defined starter culture, Tetragenococcus halophilus CICC 10286, on soybean paste fermentation by comparing natural fermentation (NF) and fortified fermentation (FF). Compared with NF, FF maintained a higher moisture in the later stage (NF-LS: 50.30%; FF-LS: 60.08%) and lower total acid levels in the middle and later stages (NF-MS: 1.58 g/100 g; FF-MS: 0.96 g/100 g; NF-LS: 2.23 g/100 g; FF-LS: 1.11 g/100 g). Although protein degradation was more pronounced in the FF group at the midpoint (p < 0.0001), the lower accumulation of amino acid nitrogen suggests a potential shift in nitrogen metabolism, possibly toward enhanced transamination or deamination processes. Free amino acid profiling indicated that FF facilitated earlier accumulation of umami and sweet amino acids, but the total free amino acid content in the later stage was lower. Specifically, Glu and Asp reached 724.47 nmol/L and 305.52 nmol/L, respectively, in NF-LS, whereas the corresponding values in FF-LS were 397.16 nmol/L and 275.46 nmol/L. Meanwhile, Pro reached 337.81 nmol/L in FF-MS, indicating earlier accumulation of some amino acids under FF. Notably, the proportion of bitter amino acids in the FF group was reduced in the later stage. Microbial community analysis showed that FF promoted the enrichment of Tetragenococcus and halotolerant bacteria, such as Halomonas, at the midpoint, and increased the relative abundance of the aroma-producing yeast Zygosaccharomyces (NF-MS: 37.73%; FF-MS: 65.11%). Functional prediction based on PICRUSt2 suggested a higher predicted abundance of genes involved in pyruvate metabolism and branched-chain amino acid degradation in the FF group. These findings demonstrate that T. halophilus CICC 10286, as a starter culture, can effectively modulate the fermentation of soybean paste, providing a scientific basis for developing standardized and quality-controlled fermentation processes. Full article
(This article belongs to the Special Issue Emerging Trends in Food Enzyme Catalysis and Food Synthetic Biology)
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